Research Output

2003

Microbial glutaminase: Biochemistry, molecular approaches and applications in the food industry

Nandakumar, R., Yoshimune, K., Wakayama, M. & Moriguchi, M., Sep 1 2003, In : Journal of Molecular Catalysis B: Enzymatic. 23, 2-6, p. 87-100 14 p.

Research output: Contribution to journalReview article

96 Scopus citations

Microcin C51 plasmid genes: Possible source of horizontal gene transfer

Fomenko, D. E., Metlitskaya, A. Z., Péduzzi, J., Goulard, C., Katrukha, G. S., Gening, L. V., Rebuffat, S. & Khmel, I. A., Sep 1 2003, In : Antimicrobial Agents and Chemotherapy. 47, 9, p. 2868-2874 7 p.

Research output: Contribution to journalArticle

35 Scopus citations

Postnatal human herpesvirus 8 and human immunodeficiency virus type 1 infection in mothers and infants from Zambia

Brayfield, B. P., Phiri, S., Kankasa, C., Muyanga, J., Mantina, H., Kwenda, G., West, J. T., Bhat, G., Marx, D. B., Klaskala, W., Mitchell, C. D. & Wood, C., Feb 15 2003, In : Journal of Infectious Diseases. 187, 4, p. 559-568 10 p.

Research output: Contribution to journalArticle

47 Scopus citations

Potentiation of TRAIL-induced apoptosis in primary effusion lymphoma through azidothymidine-mediated inhibition of NF-κB

Ghosh, S. K., Wood, C., Boise, L. H., Mian, A. M., Deyev, V. V., Feuer, G., Toomey, N. L., Shank, N. C., Cabral, L., Barber, G. N. & Harrington, W. J., Mar 15 2003, In : Blood. 101, 6, p. 2321-2327 7 p.

Research output: Contribution to journalArticle

78 Scopus citations

Protection of two PAI-2 mutants against TNF-α-mediated apoptosis

Zhang, Y. Q., Hou, M., Wang, X., Sun, X. H., Li, P. & Zhu, Y. S., Jul 2003, In : Fudan University Journal of Medical Sciences. 30, 4, p. 313-316 4 p.

Research output: Contribution to journalArticle

RacB regulates cytoskeletal function in Dictyostelium spp.

Lee, E., Seastone, D. J., Harris, E., Cardelli, J. A. & Knecht, D. A., Jun 2003, In : Eukaryotic Cell. 2, 3, p. 474-485 12 p.

Research output: Contribution to journalArticle

15 Scopus citations

Spectroscopic and computational studies of Co3+-corrinoids: Spectral and electronic properties of the B12 cofactors and biologically relevant precursors

Stich, T. A., Brooks, A. J., Buan, N. R. & Brunold, T. C., May 14 2003, In : Journal of the American Chemical Society. 125, 19, p. 5897-5914 18 p.

Research output: Contribution to journalArticle

103 Scopus citations

Structure of the proline dehydrogenase domain of the multifunctional PutA flavoprotein

Lee, Y. H., Nadaraia, S., Gu, D., Becker, D. F. & Tanner, J. J., Feb 1 2003, In : Nature Structural Biology. 10, 2, p. 109-114 6 p.

Research output: Contribution to journalArticle

92 Scopus citations

The 1.1-Å resolution crystal structure of DJ-1, the protein mutated in autosomal recessive early onset Parkinson's disease

Wilson, M. A., Collins, J. L., Hod, Y., Ringe, D. & Petsko, G. A., Aug 5 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, 16, p. 9256-9261 6 p.

Research output: Contribution to journalArticle

232 Scopus citations

The role of Kaposi's sarcoma-associated herpesvirus/human herpesvirus-8 regulator of transcription activation (RTA) in control of gene expression

West, J. T. & Wood, C., Aug 11 2003, In : Oncogene. 22, 33 REV. ISS. 2, p. 5150-5163 14 p.

Research output: Contribution to journalReview article

93 Scopus citations
152 Scopus citations

Vectorial acylation in Saccharomyces cerevisiae: Fat1p and fatty acyl-CoA synthetase are interacting components of a fatty acid import complex

Zou, Z., Tong, F., Færgeman, N. J., Børsting, C., Black, P. N. & DiRusso, C. C., May 2 2003, In : Journal of Biological Chemistry. 278, 18, p. 16414-16422 9 p.

Research output: Contribution to journalArticle

81 Scopus citations
2004

Activation of the Oryza sativa non-symbiotic haemoglobin-2 promoter by the cytokinin-regulated transcription factor, ARR1

Ross, E. J. H., Stone, J. M., Elowsky, C. G., Arredondo-Peter, P., Klucas, R. V. & Sarath, G., Aug 2004, In : Journal of experimental botany. 55, 403, p. 1721-1731 11 p.

Research output: Contribution to journalArticle

92 Scopus citations

Anchoring a Cationic Ligand: The Structure of the Fab Fragment of the Anti-morphine Antibody 9B1 and its Complex with Morphine

Pozharski, E., Wilson, M. A., Hewagama, A., Shanafelt, A. B., Petsko, G. & Ringe, D., Mar 26 2004, In : Journal of Molecular Biology. 337, 3, p. 691-697 7 p.

Research output: Contribution to journalArticle

23 Scopus citations

A novel gene delivery system targeting urokinase receptor

Sun, X. H., Tan, L., Li, C. Y., Tong, C., Fan, J., Li, P. & Zhu, Y. S., Jul 2004, In : Acta Biochimica et Biophysica Sinica. 36, 7, p. 485-491 7 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Bacterial long chain fatty acid transport: Gateway to a fatty acid-responsive signaling system

Dirusso, C. C. & Black, P. N., Nov 26 2004, In : Journal of Biological Chemistry. 279, 48, p. 49563-49566 4 p.

Research output: Contribution to journalShort survey

69 Scopus citations

Characterization of human UDP-glucose dehydrogenase: CYS-276 is required for the second of two successive oxidations

Sommer, B. J., Barycki, J. J. & Simpson, M. A., May 28 2004, In : Journal of Biological Chemistry. 279, 22, p. 23590-23596 7 p.

Research output: Contribution to journalArticle

46 Scopus citations

CO-induced structural rearrangement of the C cluster in Carboxydothermus hydrogenoformans CO dehydrogenase - Evidence from Ni K-edge X-ray absorption spectroscopy?

Gu, W., Seravalli, J., Ragsdale, S. W. & Cramer, S. P., Jul 20 2004, In : Biochemistry. 43, 28, p. 9029-9035 7 p.

Research output: Contribution to journalArticle

23 Scopus citations

Crystal structure of the long-chain fatty acid transporter FadL

Van Den Berg, B., Black, P. N., Clemons, W. M. & Rapoport, T. A., Jun 4 2004, In : Science. 304, 5676, p. 1506-1509 4 p.

Research output: Contribution to journalArticle

141 Scopus citations

Dimorphecolic Acid Is Synthesized by the Coordinate Activities of Two Divergent Δ12-Oleic Acid Desaturases

Cahoon, E. B. & Kinney, A. J., Mar 26 2004, In : Journal of Biological Chemistry. 279, 13, p. 12495-12502 8 p.

Research output: Contribution to journalArticle

34 Scopus citations

Distribution of kaposi sarcoma-associated herpesvirus/human herpesvirus 8 in maternal saliva and breast milk in Zambia: Implications for transmission

Brayfield, B. P., Kankasa, C., West, J. T., Muyanga, J., Bhat, G., Klaskala, W., Mitchell, C. D. & Wood, C., Jun 15 2004, In : Journal of Infectious Diseases. 189, 12, p. 2260-2270 11 p.

Research output: Contribution to journalArticle

58 Scopus citations

Endocytic function, glycosaminoglycan specificity, and antibody sensitivity of the recombinant human 190-kDa hyaluronan receptor for endocytosis (HARE)

Harris, E. N., Weigel, J. A. & Weigel, P. H., Aug 27 2004, In : Journal of Biological Chemistry. 279, 35, p. 36201-36209 9 p.

Research output: Contribution to journalArticle

58 Scopus citations
1 Scopus citations

Evidence that NiNi Acetyl-CoA Synthase Is Active and that the CuNi Enzyme Is Not

Seravalli, J., Xiao, Y., Gu, W., Cramer, S. P., Antholine, W. E., Krymov, V., Gerfen, G. J. & Ragsdale, S. W., Apr 6 2004, In : Biochemistry. 43, 13, p. 3944-3955 12 p.

Research output: Contribution to journalArticle

70 Scopus citations

Fusion expression and purification of HA20-lys10 in E. coli and its gel retardation experiments

Sun, X. H., Zhang, Y. Q., Wang, X., Hou, M., Tan, L., Li, P. & Zhu, Y. S., Jan 2004, In : Fudan University Journal of Medical Sciences. 31, 1, p. 32-35 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Hyaluronan facilitates invasion of colon carcinoma cells in vitro via interaction with CD44

Kim, H. R., Wheeler, M. A., Wilson, C. M., Iida, J., Eng, D., Simpson, M. A., McCarthy, J. B. & Bullard, K. M., Jul 1 2004, In : Cancer Research. 64, 13, p. 4569-4576 8 p.

Research output: Contribution to journalArticle

103 Scopus citations

Identification and characterization of the DNA-binding domain of the multifunctional PutA flavoenzyme

Gu, D., Zhou, Y., Kallhoff, V., Baban, B., Tanner, J. J. & Becker, D. F., Jul 23 2004, In : Journal of Biological Chemistry. 279, 30, p. 31171-31176 6 p.

Research output: Contribution to journalArticle

42 Scopus citations

Identification of Methionine-rich Clusters That Regulate Copper-stimulated Endocytosis of the Human Ctr1 Copper Transporter

Guo, Y., Smith, K., Lee, J., Thiele, D. J. & Petris, M. J., Apr 23 2004, In : Journal of Biological Chemistry. 279, 17, p. 17428-17433 6 p.

Research output: Contribution to journalArticle

136 Scopus citations

Identification of trace element-containing proteins in genomic databases

Gladyshev, V. N., Kryukov, G. V., Fomenko, D. E. & Hatfield, D. L., 2004, In : Annual Review of Nutrition. 24, p. 579-596 18 p.

Research output: Contribution to journalReview article

48 Scopus citations

Infectious molecular clone of a recently transmitted pediatric human immunodeficiency virus clade C isolate from Africa: Evidence of intraclade recombination

Grisson, R. D., Chenine, A. L., Yeh, L. Y., He, J., Wood, C., Bhat, G. J., Xu, W., Kankasa, C. & Ruprecht, R. M., Dec 2004, In : Journal of virology. 78, 24, p. 14066-14069 4 p.

Research output: Contribution to journalArticle

30 Scopus citations

Interactions between Small Heat Shock Protein Subunits and Substrate in Small Heat Shock Protein-Substrate Complexes

Friedrich, K. L., Giese, K. C., Buan, N. R. & Vierling, E., Jan 9 2004, In : Journal of Biological Chemistry. 279, 2, p. 1080-1089 10 p.

Research output: Contribution to journalArticle

91 Scopus citations

Melanoma chondroitin sulfate proteoglycan enhances FAK and ERK activation by distinct mechanisms

Yang, J., Price, M. A., Neudauer, C. L., Wilson, C., Ferrone, S., Xia, H., Iida, J., Simpson, M. A. & McCarthy, J. B., Jun 21 2004, In : Journal of Cell Biology. 165, 6, p. 881-891 11 p.

Research output: Contribution to journalArticle

112 Scopus citations

Mobilization of intracellular copper stores by the Ctr2 vacuolar copper transporter

Rees, E. M., Lee, J. & Thiele, D. J., Dec 24 2004, In : Journal of Biological Chemistry. 279, 52, p. 54221-54229 9 p.

Research output: Contribution to journalArticle

143 Scopus citations

New techniques for generation and analysis of evolutionary trees

Wang, C., Scott, S. D., Tao, Q., Fomenko, D. E. & Gladyshev, V. N., 2004, Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04. Valafar, F. & Valafar, H. (eds.). p. 283-289 7 p. (Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Preserved antigenicity of HIV-1 p24 produced and purified in high yields from plants inoculated with a tobacco mosaic virus (TMV)-derived vector

Pérez-Filgueira, D. M., Brayfield, B. P., Phiri, S., Borca, M. V., Wood, C. & Morris, T. J., Nov 2004, In : Journal of Virological Methods. 121, 2, p. 201-208 8 p.

Research output: Contribution to journalArticle

30 Scopus citations

Probing a hydrogen bond pair and the FAD redox properties in the proline dehydrogenase domain of Escherichia coli PutA

Baban, B. A., Vinod, M. P., Tanner, J. J. & Becker, D. F., Sep 1 2004, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1701, 1-2, p. 49-59 11 p.

Research output: Contribution to journalArticle

18 Scopus citations

Rat Long Chain Acyl-CoA Synthetase 5, but Not 1, 2, 3, or 4, Complements Escherichia coli fadD

Caviglia, J. M., Li, L. O., Wang, S., DiRusso, C. C., Coleman, R. A. & Lewin, T. M., Mar 19 2004, In : Journal of Biological Chemistry. 279, 12, p. 11163-11169 7 p.

Research output: Contribution to journalArticle

18 Scopus citations

Regulation of PutA - Membrane associations by flavin adenine dinucleotide reduction

Zhang, W., Zhou, Y. & Becker, D. F., Oct 19 2004, In : Biochemistry. 43, 41, p. 13165-13174 10 p.

Research output: Contribution to journalArticle

41 Scopus citations

Revised nomenclature for the mammalian long-chain acyl-CoA synthetase gene family

Mashek, D. G., Bornfeldt, K. E., Coleman, R. A., Berger, J., Bernlohr, D. A., Black, P., DiRusso, C. C., Farber, S. A., Guo, W., Hashimoto, N., Khodiyar, V., Kuypers, F. A., Maltais, L. J., Nebert, D. W., Renieri, A., Schaffer, J. E., Stahl, A., Watkins, P. A., Vasiliou, V. & Yamamoto, T. T., Oct 2004, In : Journal of Lipid Research. 45, 10, p. 1958-1961 4 p.

Research output: Contribution to journalArticle

114 Scopus citations

Role of C-terminal heptapeptide in pore-forming activity of antimicrobial agent, gaegurin 4

Kim, H. J., Kim, S. S., Lee, M. H., Lee, B. J. & Ryu, P. D., Oct 2004, In : Journal of Peptide Research. 64, 4, p. 151-158 8 p.

Research output: Contribution to journalArticle

15 Scopus citations
94 Scopus citations

Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors

Zhang, M., White, T. A., Schuermann, J. P., Baban, B. A., Becker, D. F. & Tanner, J. J., Oct 5 2004, In : Biochemistry. 43, 39, p. 12539-12548 10 p.

Research output: Contribution to journalArticle

59 Scopus citations

The 1.8-Å resolution crystal structure of YDR533Cp from Saccharomyces cerevisiae: A member of the DJ-1/ThiJ/PfpI superfamily

Wilson, M. A., St. Amour, C. V., Collins, J. L., Ringe, D. & Petsko, G. A., Feb 10 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 6, p. 1531-1536 6 p.

Research output: Contribution to journalArticle

87 Scopus citations

The eutT gene of Salmonella enterica encodes an oxygen-labile, metal-containing ATP: Corrinoid adenosyltransferase enzyme

Buan, N. R., Suh, S. J. & Escalante-Semerena, J. C., Sep 2004, In : Journal of bacteriology. 186, 17, p. 5708-5714 7 p.

Research output: Contribution to journalArticle

52 Scopus citations

The Identity of Proteins Associated with a Small Heat Shock Potein during Heat Stress in Vivo Indicates That These Chaperones Protect a Wide Range of Cellular Functions

Basha, E., Lee, G. J., Breci, L. A., Hausrath, A. C., Buan, N. R., Giese, K. C. & Vierling, E., Feb 27 2004, In : Journal of Biological Chemistry. 279, 9, p. 7566-7575 10 p.

Research output: Contribution to journalArticle

133 Scopus citations

The Parkinson's disease DJ-1 is neuroprotective due to cysteine-sulfinic acid-driven mitochondrial localization

Canet-Avilés, R. M., Wilson, M. A., Miller, D. W., Ahmad, R., McLendon, C., Bandyopadhyay, S., Baptista, M. J., Ringe, D., Petsko, G. A. & Cookson, M. R., Jun 15 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 24, p. 9103-9108 6 p.

Research output: Contribution to journalArticle

800 Scopus citations

Tissue-specific expression and developmental regulation of cytochrome b561 genes in Arabidopsis thaliana and Raphanus sativus

Verelst, W., Kapila, J., De Almeida Engler, J., Stone, J. M., Caubergs, R. & Asard, H., Feb 2004, In : Physiologia Plantarum. 120, 2, p. 312-318 7 p.

Research output: Contribution to journalArticle

7 Scopus citations
2005

5-Hydroxydecanoate is metabolised in mitochondria and creates a rate-limiting bottleneck for β-oxidation of fatty acids

Hanley, P. J., Dröse, S., Brandt, U., Lareau, R. A., Banerjee, A. L., Srivastava, D. K., Banaszak, L. J., Barycki, J. J., Van Veldhoven, P. P. & Daut, J., Jan 15 2005, In : Journal of Physiology. 562, 2, p. 307-318 12 p.

Research output: Contribution to journalArticle

79 Scopus citations

A hybrid protein of the amino-terminal fragment of urokinase and mutant plasminogen activator inhibitor-2 efficiently inhibits tumor cell invasion and metastasis

Wang, X., Hou, M., Tan, L., Sun, X., Zhang, Y., Li, P. & Zhu, Y., Feb 2005, In : Journal of Cancer Research and Clinical Oncology. 131, 2, p. 129-136 8 p.

Research output: Contribution to journalArticle

7 Scopus citations