Research Output

2006

Direct interaction of Saccharomyces cerevisiae Faa1p with the Omi/HtrA protease orthologue Ynm3p alters lipid homeostasis

Tong, F., Black, P. N., Bivins, L., Quackenbush, S., Ctrnacta, V. & DiRusso, C. C., Apr 2006, In : Molecular Genetics and Genomics. 275, 4, p. 330-343 14 p.

Research output: Contribution to journalArticle

13 Scopus citations

EPR spectroscopic and computational characterization of the hydroxyethylidene-thiamine pyrophosphate radical intermediate of pyruvate:ferredoxin oxidoreductase

Mansoorabadi, S. O., Seravalli, J., Furdui, C., Krymov, V., Gerfen, G. J., Begley, T. P., Melnick, J., Ragsdale, S. W. & Reed, G. H., Jun 13 2006, In : Biochemistry. 45, 23, p. 7122-7131 10 p.

Research output: Contribution to journalArticle

54 Scopus citations

Erratum: Reduction and oxidation of the active site iron in tyrosine hydroxylase: Kinetics and specificity (Biochemistry (February 21, 2006) 45, 7 (2372-2379))

Frantom, P. A., Seravalli, J., Ragsdale, S. W. & Fitzpatrick, P. F., Apr 4 2006, In : Biochemistry. 45, 13, p. 4338 1 p.

Research output: Contribution to journalComment/debate

Factors associated with HIV prevalence in a pre-partum cohort of Zambian women

St Lawrence, J. S., Klaskala, W., Kankasa, C., West, J. T., Mitchell, C. D. & Wood, C., 2006, In : International Journal of STD and AIDS. 17, 9, p. 607-613 7 p.

Research output: Contribution to journalArticle

30 Scopus citations
36 Scopus citations

Hyaluronidase expression induces prostate tumor metastasis in an orthotopic mouse model

Kovar, J. L., Johnson, M. A., Volcheck, W. M., Chen, J. & Simpson, M. A., Oct 2006, In : American Journal of Pathology. 169, 4, p. 1415-1426 12 p.

Research output: Contribution to journalArticle

93 Scopus citations

Identification and functional characterization of the moss Physcomitrella patens Δ5-desaturase gene involved in arachidonic and eicosapentaenoic acid biosynthesis

Kaewsuwan, S., Cahoon, E. B., Perroud, P. F., Wiwat, C., Panvisavas, N., Quatrano, R. S., Cove, D. J. & Bunyapraphatsara, N., Aug 4 2006, In : Journal of Biological Chemistry. 281, 31, p. 21988-21997 10 p.

Research output: Contribution to journalArticle

33 Scopus citations

Inhibition of oxidative stress-induced invasiveness of cancer cells by Ganoderma lucidum is mediated through the suppression of interleukin-8 secretion

Thyagarajan, A., Jiang, J., Hopf, A., Adamec, J. & Sliva, D., Oct 2006, In : International journal of molecular medicine. 18, 4, p. 657-664 8 p.

Research output: Contribution to journalArticle

Open Access
59 Scopus citations

Kinetic and thermodynamic analysis of Bradyrhizobium japonicum PutA-membrane associations

Zhang, W., Krishnan, N. & Becker, D. F., Jan 1 2006, In : Archives of Biochemistry and Biophysics. 445, 1, p. 174-183 10 p.

Research output: Contribution to journalArticle

13 Scopus citations

Members of the arabidopsis FAE1-like 3-ketoacyl-CoA synthase gene family substitute for the elop proteins of Saccharomyces cerevisiae

Paul, S., Gable, K., Beaudoin, F., Cahoon, E., Jaworski, J., Napier, J. A. & Dunn, T. M., Apr 7 2006, In : Journal of Biological Chemistry. 281, 14, p. 9018-9029 12 p.

Research output: Contribution to journalArticle

87 Scopus citations
1 Scopus citations

Molecularly cloned SHIV-1157ipd3N4: A highly replication-competent, mucosally transmissible R5 simian-human immunodeficiency virus encoding HIV clade C env

Song, R. J., Chenine, A. L., Rasmussen, R. A., Ruprecht, C. R., Mirshahidi, S., Grisson, R. D., Xu, W., Whitney, J. B., Goins, L. M., Ong, H., Li, P. L., Shai-Kobiler, E., Wang, T., McCann, C. M., Zhang, H., Wood, C., Kankasa, C., Secor, W. E., McClure, H. M., Strobert, E. & 2 others, Else, J. G. & Ruprecht, R. M., Sep 2006, In : Journal of virology. 80, 17, p. 8729-8738 10 p.

Research output: Contribution to journalArticle

109 Scopus citations

Molecular mechanisms of copper homeostasis in yeast

Lee, J., Adle, D. & Kim, H., 2006, In : Topics in Current Genetics. 14, p. 1-36 36 p.

Research output: Contribution to journalArticle

4 Scopus citations

NMR structures of the selenoproteins Sep15 and SelM reveal redox activity of a new thioredoxin-like family

Ferguson, A. D., Labunskyy, V. M., Fomenko, D. E., Araç, D., Chelliah, Y., Amezcua, C. A., Rizo, J., Gladyshev, V. N. & Deisenhofer, J., Feb 10 2006, In : Journal of Biological Chemistry. 281, 6, p. 3536-3543 8 p.

Research output: Contribution to journalArticle

148 Scopus citations

Oxygen reactivity of PutA from Helicobacter species and proline-linked oxidative stress

Krishnan, N. & Becker, D. F., Feb 2006, In : Journal of bacteriology. 188, 4, p. 1227-1235 9 p.

Research output: Contribution to journalArticle

34 Scopus citations

Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance

Bindschedler, L. V., Dewdney, J., Blee, K. A., Stone, J. M., Asai, T., Plotnikov, J., Denoux, C., Hayes, T., Gerrish, C., Davies, D. R., Ausubel, F. M. & Bolwell, G. P., Sep 2006, In : Plant Journal. 47, 6, p. 851-863 13 p.

Research output: Contribution to journalArticle

355 Scopus citations

Pulsed electron paramagnetic resonance experiments identify the paramagnetic intermediates in the pyruvate ferredoxin oxidoreductase catalytic cycle

Astashkin, A. V., Seravalli, J., Mansoorabadi, S. O., Reed, G. H. & Ragsdale, S. W., Mar 29 2006, In : Journal of the American Chemical Society. 128, 12, p. 3888-3889 2 p.

Research output: Contribution to journalArticle

30 Scopus citations

Purification and initial biochemical characterization of ATP:Cob(I)alamin adenosyltransferase (EutT) enzyme of Salmonella enterica

Buan, N. R. & Escalante-Semerena, J. C., Jun 23 2006, In : Journal of Biological Chemistry. 281, 25, p. 16971-16977 7 p.

Research output: Contribution to journalArticle

23 Scopus citations

Reactive oxygen species as signals that modulate plant stress responses and programmed cell death

Gechev, T. S., Van Breusegem, F., Stone, J. M., Denev, I. & Laloi, C., Nov 2006, In : BioEssays. 28, 11, p. 1091-1101 11 p.

Research output: Contribution to journalReview article

655 Scopus citations

Reduction and oxidation of the active site iron in tyrosine hydroxylase: Kinetics and specificity

Frantom, P. A., Seravalli, J., Ragsdale, S. W. & Fitzpatrick, P. F., Feb 21 2006, In : Biochemistry. 45, 7, p. 2372-2379 8 p.

Research output: Contribution to journalArticle

27 Scopus citations

Separation and identification of major plant sphingolipid classes from leaves

Markham, J. E., Li, J., Cahoon, E. B. & Jaworski, J. G., Aug 11 2006, In : Journal of Biological Chemistry. 281, 32, p. 22684-22694 11 p.

Research output: Contribution to journalArticle

193 Scopus citations

Sequential processing of a mitochondrial tandem protein: Insights into protein import in Schizosaccharomyces pombe

Khalimonchuk, O., Ott, M., Funes, S., Ostermann, K., Rödel, G. & Herrmann, J. M., Jul 2006, In : Eukaryotic Cell. 5, 7, p. 997-1006 10 p.

Research output: Contribution to journalArticle

14 Scopus citations

Spectroscopic studies of the corrinoid/iron-sulfur protein from Moorella thermoacetica

Stich, T. A., Seravalli, J., Venkateshrao, S., Spiro, T. G., Ragsdale, S. W. & Brunold, T. C., Apr 19 2006, In : Journal of the American Chemical Society. 128, 15, p. 5010-5020 11 p.

Research output: Contribution to journalArticle

34 Scopus citations

Studies of the CobA-type ATP:Co(I)rrinoid adenosyltransferase enzyme of Methanosarcina mazei strain Gö1

Buan, N. R., Rehfeld, K. & Escalante-Semerena, J. C., May 2006, In : Journal of bacteriology. 188, 10, p. 3543-3550 8 p.

Research output: Contribution to journalArticle

8 Scopus citations

The essential nature of sphingolipids in plants as revealed by the functional identification and characterization of the Arabidopsis LCB1 subunit of serine palmitoyltransferase

Chen, M., Han, G., Dietrich, C. R., Dunn, T. M. & Cahoon, E. B., Dec 2006, In : Plant Cell. 18, 12, p. 3576-3593 18 p.

Research output: Contribution to journalArticle

104 Scopus citations

The oxidation state of DJ-1 regulates its chaperone activity toward α-synuclein

Zhou, W., Zhu, M., Wilson, M. A., Petsko, G. A. & Fink, A. L., Mar 3 2006, In : Journal of Molecular Biology. 356, 4, p. 1036-1048 13 p.

Research output: Contribution to journalArticle

277 Scopus citations

Tomato QM-like protein protects Saccharomyces cerevisiae cells against oxidative stress by regulating intracellular proline levels

Chen, C., Wanduragala, S., Becker, D. F. & Dickman, M. B., Jun 2006, In : Applied and environmental microbiology. 72, 6, p. 4001-4006 6 p.

Research output: Contribution to journalArticle

63 Scopus citations

Uncoupling the enzymatic and autoprocessing activities of Helicobacter pylori γ-glutamyltranspeptidase

Boanca, G., Sand, A. & Barycki, J. J., Jul 14 2006, In : Journal of Biological Chemistry. 281, 28, p. 19029-19037 9 p.

Research output: Contribution to journalArticle

63 Scopus citations
2007

A cadmium-transporting P1B-type ATPase in yeast Saccharomyces cerevisiae

Adle, D. J., Sinani, D., Kim, H. & Lee, J., Jan 12 2007, In : Journal of Biological Chemistry. 282, 2, p. 947-955 9 p.

Research output: Contribution to journalArticle

43 Scopus citations

A conserved cis-proline precludes metal binding by the active site thiolates in members of the thioredoxin family of proteins

Su, D., Berndt, C., Fomenko, D. E., Holmgren, A. & Gladyshev, V. N., Jun 12 2007, In : Biochemistry. 46, 23, p. 6903-6910 8 p.

Research output: Contribution to journalArticle

47 Scopus citations

A human action classifier from 4-D data (3-D+TIME): Based on an invariant body shape descriptor and hidden markov models

Pierobon, M., Marcon, M., Sarti, A. & Tubaro, S., 2007, p. 406-413. 8 p.

Research output: Contribution to conferencePaper

1 Scopus citations

AIDS-assoicated viral oncogenesis. Overview.

Wood, C., 2007, In : Cancer treatment and research. 133, p. 1-19 19 p.

Research output: Contribution to journalReview article

1 Scopus citations

Antioxidant Molecules and Redox Cofactors

Barycki, J. J., Asard, H., Stone, J. M., Wilson, M. A., Banerjee, R. & Becker, D. F., Mar 14 2007, Redox Biochemistry. John Wiley & Sons, Inc., p. 11-47 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

Arabidopsis mutants lacking long chain base phosphate lyase are fumonisin-sensitive and accumulate trihydroxy-18:1 long chain base phosphate

Tsegaye, Y., Richardson, C. G., Bravo, J. E., Mulcahy, B. J., Lynch, D. V., Markham, J. E., Jaworski, J. G., Chen, M., Cahoon, E. B. & Dunn, T. M., Sep 21 2007, In : Journal of Biological Chemistry. 282, 38, p. 28195-28206 12 p.

Research output: Contribution to journalArticle

57 Scopus citations

Arabidopsis thaliana GH3.9 in auxin and jasmonate cross talk

Khan, S. & Stone, J. M., 2007, In : Plant Signaling and Behavior. 2, 6, p. 483-485 3 p.

Research output: Contribution to journalArticle

24 Scopus citations

Arabidopsis thaliana GH3.9 influences primary root growth

Khan, S. & Stone, J. M., Jun 2007, In : Planta. 226, 1, p. 21-34 14 p.

Research output: Contribution to journalArticle

51 Scopus citations

A systematic approach to the development of fluorescent contrast agents for optical imaging of mouse cancer models

Kovar, J. L., Simpson, M. A., Schutz-Geschwender, A. & Olive, D. M., Aug 1 2007, In : Analytical Biochemistry. 367, 1, p. 1-12 12 p.

Research output: Contribution to journalReview article

123 Scopus citations

Autoprocessing of Helicobacter pylori γ-glutamyltranspeptidase leads to the formation of a threonine-threonine catalytic dyad

Boanca, G., Sand, A., Okada, T., Suzuki, H., Kumagai, H., Fukuyama, K. & Barycki, J. J., Jan 5 2007, In : Journal of Biological Chemistry. 282, 1, p. 534-541 8 p.

Research output: Contribution to journalArticle

60 Scopus citations

Characterization of Helicobacter pylori γ-glutamyltranspeptidase reveals the molecular basis for substrate specificity and a critical role for the tyrosine 433-containing loop in catalysis

Morrow, A. L., Williams, K., Sand, A., Boanca, G. & Barycki, J. J., Nov 20 2007, In : Biochemistry. 46, 46, p. 13407-13414 8 p.

Research output: Contribution to journalArticle

29 Scopus citations

Characterization of human UDP-glucose dehydrogenase reveals critical catalytic roles for lysine 220 and aspartate 280

Easley, K. E., Sommer, B. J., Boanca, G., Barycki, J. J. & Simpson, M. A., Jan 16 2007, In : Biochemistry. 46, 2, p. 369-378 10 p.

Research output: Contribution to journalArticle

21 Scopus citations

Characterization of the cytochrome c oxidase assembly factor Cox19 of Saccharomyces cerevisiae

Rigby, K., Zhang, L., Cobine, P. A., George, G. N. & Winge, D. R., Apr 6 2007, In : Journal of Biological Chemistry. 282, 14, p. 10233-10242 10 p.

Research output: Contribution to journalArticle

45 Scopus citations

Coa1 links the Mss51 post-translational function to Cox1 cofactor insertion in cytochrome c oxidase assembly

Pierrel, F., Bestwick, M. L., Cobine, P. A., Khalimonchuk, O., Cricco, J. A. & Winge, D. R., Oct 17 2007, In : EMBO Journal. 26, 20, p. 4335-4346 12 p.

Research output: Contribution to journalArticle

104 Scopus citations

CsoR is a novel Mycobacterium tuberculosis copper-sensing transcriptional regulator

Liu, T., Ramesh, A., Ma, Z., Ward, S. K., Zhang, L., George, G. N., Talaat, A. M., Sacchettini, J. C. & Giedroc, D. P., Jan 2007, In : Nature Chemical Biology. 3, 1, p. 60-68 9 p.

Research output: Contribution to journalArticle

223 Scopus citations

Discussion

Bernlohr, D. A., Li, P., Black, P. N., Shi, Y., Glass, C. K. & Spiegelman, B. M., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 159-161 3 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Discussion

Tabas, I., Daum, G., Yang, R., Spiegelman, B. M., Black, P. N., Shi, Y. & Bernlohr, D. A., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 151-154 4 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Discussion

Black, P. N., Bernlohr, D. A., Shi, Y., Attie, A. D., Hotamisligil, G. S., Spiegelman, B. M., Tabas, I., O'Rahilly, S., Sabin, M., Saito, M., Glass, C. K. & Daum, G., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 121-126 6 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Discussion

Spiegelman, B. M., Muoio, D. M., Black, P. N., Hotamisligil, G. S., Zhang, C. Y., Kadowaki, T., Bernlohr, D. A., Shi, Y. & Attie, A. D., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 38-46 9 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Distinct mechanisms for Ctr1-mediated copper and cisplatin transport

Sinani, D., Adle, D. J., Kim, H. & Lee, J., Sep 14 2007, In : Journal of Biological Chemistry. 282, 37, p. 26775-26785 11 p.

Research output: Contribution to journalArticle

81 Scopus citations

Effects of hindlimb unloading and bisphosphonates on the serum proteome of rats

Zhao, Y., Fleet, J. C., Adamec, J., Terry, D. E., Zhang, X., Kemeh, S., Davisson, V. J. & Weaver, C. M., Oct 2007, In : Bone. 41, 4, p. 646-658 13 p.

Research output: Contribution to journalArticle

1 Scopus citations