Research Output

2007

Engineering oilseeds for sustainable production of industrial and nutritional feedstocks: solving bottlenecks in fatty acid flux

Cahoon, E. B., Shockey, J. M., Dietrich, C. R., Gidda, S. K., Mullen, R. T. & Dyer, J. M., Jun 2007, In : Current Opinion in Plant Biology. 10, 3, p. 236-244 9 p.

Research output: Contribution to journalReview article

156 Scopus citations

Enhancement of the LC/MS analysis of fatty acids through derivatization and stable isotope coding

Yang, W. C., Adamec, J. & Regnier, F. E., Jul 15 2007, In : Analytical chemistry. 79, 14, p. 5150-5157 8 p.

Research output: Contribution to journalArticle

122 Scopus citations

Enhancing vitamin E in oilseeds: Unraveling tocopherol and tocotrienol biosynthesis

Hunter, S. C. & Cahoon, E. B., Mar 2007, In : Lipids. 42, 2, p. 97-108 12 p.

Research output: Contribution to journalReview article

93 Scopus citations

Evidence for a pro-oxidant intermediate in the assembly of cytochrome oxidase

Khalimonchuk, O., Bird, A. & Winge, D. R., Jun 15 2007, In : Journal of Biological Chemistry. 282, 24, p. 17442-17449 8 p.

Research output: Contribution to journalArticle

82 Scopus citations

Evolutionary dynamics of eukaryotic selenoproteomes: Large selenoproteomes may associate with aquatic life and small with terrestrial life

Lobanov, A. V., Fomenko, D. E., Zhang, Y., Sengupta, A., Hatfield, D. L. & Gladyshev, V. N., Sep 19 2007, In : Genome biology. 8, 9, R198.

Research output: Contribution to journalArticle

133 Scopus citations

Expression, processing, and glycosaminoglycan binding activity of the recombinant human 315-kDa Hyaluronic Acid Receptor for Endocytosis (HARE)

Harris, E. N., Kyosseva, S. V., Weigel, J. A. & Weigel, P. H., Jan 2 2007, In : Journal of Biological Chemistry. 282, 5, p. 2785-2797 13 p.

Research output: Contribution to journalArticle

92 Scopus citations

Final discussion: Nutrition, ageing and lipotoxicity

Tabas, I., Black, P. N., Spiegelman, B. M., O'Rahilly, S., Bernlohr, D. A., Glass, C. K., Muoio, D. M. & Attie, A. D., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 200-203 4 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glucosylceramide synthase is essential for alfalfa defensin-mediated growth inhibition but not for pathogenicity of Fusarium graminearum

Ramamoorthy, V., Cahoon, E. B., Li, J., Thokala, M., Minto, R. E. & Shah, D. M., Nov 2007, In : Molecular Microbiology. 66, 3, p. 771-786 16 p.

Research output: Contribution to journalArticle

71 Scopus citations

High-throughput identification of catalytic redox-active cystein residues

Fomenko, D. E., Xing, W., Adair, B. M., Thomas, D. J. & Gladyshev, V. N., Jan 19 2007, In : Science. 315, 5810, p. 387-389 3 p.

Research output: Contribution to journalArticle

140 Scopus citations

Human immunodeficiency virus type 1 pathobiology studied in humanized BALB/c-Rag2-/-γc-/- mice

Gorantla, S., Sneller, H., Walters, L., Sharp, J. G., Pirruccello, S. J., West, J. T., Wood, C., Dewhurst, S., Gendelman, H. E. & Poluektova, L., Mar 2007, In : Journal of virology. 81, 6, p. 2700-2712 13 p.

Research output: Contribution to journalArticle

97 Scopus citations

Identification of a novel domain at the N terminus of caveolin-1 that controls rear polarization of the protein and caveolae formation

Sun, X. H., Flynn, D. C., Castranova, V., Millecchia, L. L., Beardsley, A. R. & Liu, J., Mar 2 2007, In : Journal of Biological Chemistry. 282, 10, p. 7232-7241 10 p.

Research output: Contribution to journalArticle

31 Scopus citations

Identification of functional subclasses in the DJ-1 superfamily proteins

Wei, Y., Ringe, D., Wilson, M. A. & Ondrechen, M. J., Jan 2007, In : PLoS computational biology. 3, 1, p. 120-126 7 p.

Research output: Contribution to journalArticle

53 Scopus citations

Inducible hyaluronan production reveals differential effects on prostate tumor cell growth and tumor angiogenesis

Bharadwaj, A. G., Rector, K. & Simpson, M. A., Jul 13 2007, In : Journal of Biological Chemistry. 282, 28, p. 20561-20572 12 p.

Research output: Contribution to journalArticle

47 Scopus citations

Interactions among PIN-FORMED and P-glycoprotein auxin transporters in Arabidopsis

Blakeslee, J. J., Bandyopadhyay, A., Ok, R. L., Mravec, J., Titapiwatanakun, B., Sauer, M., Makam, S. N., Cheng, Y., Bouchard, R., Adamec, J., Geisler, M., Nagashima, A., Sakai, T., Martinoia, E., Friml, J., Peer, W. A. & Murphy, A. S., Jan 2007, In : Plant Cell. 19, 1, p. 131-147 17 p.

Research output: Contribution to journalArticle

283 Scopus citations

Intrinsic motions along an enzymatic reaction trajectory

Henzler-Wildman, K. A., Thai, V., Lei, M., Ott, M., Wolf-Watz, M., Fenn, T., Pozharski, E., Wilson, M. A., Petsko, G. A., Karplus, M., Hübner, C. G. & Kern, D., Dec 6 2007, In : Nature. 450, 7171, p. 838-844 7 p.

Research output: Contribution to journalArticle

631 Scopus citations

Mechanistic studies of the long chain acyl-CoA synthetase Faa1p from Saccharomyces cerevisiae

Li, H., Melton, E. M., Quackenbush, S., DiRusso, C. C. & Black, P. N., Sep 2007, In : Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1771, 9, p. 1246-1253 8 p.

Research output: Contribution to journalArticle

15 Scopus citations

Molecular- and Culture-based Comparison of the Effects of Antimicrobial Agents on Bacterial Survival in Infected Dentinal Tubules

Cook, J., Nandakumar, R. & Fouad, A. F., Jun 2007, In : Journal of endodontics. 33, 6, p. 690-692 3 p.

Research output: Contribution to journalArticle

27 Scopus citations

Nickel enzymes involved in catalyzing the reduction of CO2 to methane and acetic acid

Ragsdale, S. W., Kunz, R. C., Dey, M., Seravalli, J., Brabec, B., Doukov, T. I. & Drennan, C. L., 2007, 233rd ACS National Meeting, Abstracts of Scientific Papers. (ACS National Meeting Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Overexpression of caveolin-1 inhibits endothelial cell proliferation by arresting the cell cycle at G0/G1 phase

Fang, K., Fu, W., Beardsley, A. R., Sun, X., Lisanti, M. P. & Liu, J., Jan 15 2007, In : Cell Cycle. 6, 2, p. 199-204 6 p.

Research output: Contribution to journalArticle

39 Scopus citations

Primer sensitivity: can it influence the results in Enterococcus faecalis prevalence studies?

Nandakumar, R., Mirchandani, R. & Fouad, A., Mar 2007, In : Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology and Endodontology. 103, 3, p. 429-432 4 p.

Research output: Contribution to journalArticle

6 Scopus citations

Purification method directly influences effectiveness of an epidermal growth factor-coupled targeting agent for noninvasive tumor detection in mice

Kovar, J. L., Volcheck, W. M., Chen, J. & Simpson, M. A., Feb 1 2007, In : Analytical Biochemistry. 361, 1, p. 47-54 8 p.

Research output: Contribution to journalArticle

23 Scopus citations

Rapid and efficient electrocatalytic CO2/CO interconversions by Carboxydothermus hydrogenoformans CO dehydrogenase I on an electrode

Parkin, A., Seravalli, J., Vincent, K. A., Ragsdale, S. W. & Armstrong, F. A., Aug 29 2007, In : Journal of the American Chemical Society. 129, 34, p. 10328-10329 2 p.

Research output: Contribution to journalArticle

117 Scopus citations
164 Scopus citations

Redox Biochemistry

Banerjee, R., Becker, D. F., Dickman, M. B., Gladyshev, V. N. & Ragsdale, S. W., Mar 14 2007, John Wiley and Sons. 317 p.

Research output: Book/ReportBook

49 Scopus citations

Redox-induced changes in flavin structure and roles of flavin N(5) and the ribityl 2′-OH group in regulating PutA-membrane binding

Zhang, W., Zhang, M., Zhu, W., Zhou, Y., Wanduragala, S., Rewinkel, D., Tanner, J. J. & Becker, D. F., Jan 16 2007, In : Biochemistry. 46, 2, p. 483-491 9 p.

Research output: Contribution to journalArticle

44 Scopus citations

Redox Regulation of Physiological Processes

Rovira, I. I., Finkel, T., Masters, B. S., Dickman, M. B., Lee, J., Ragsdale, S. W. & Lee, C. C., Mar 14 2007, Redox Biochemistry. John Wiley & Sons, Inc., p. 135-182 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

SelT, SelW, SelH, and Rdx 12: Genomics and molecular insights into the functions of selenoproteins of a novel thioredoxin-like family

Dikiy, A., Novoselov, S. V., Fomenko, D. E., Sengupta, A., Carlson, B. A., Cerny, R. L., Ginalski, K., Grishin, N. V., Hatfield, D. L. & Gladyshev, V. N., Jun 12 2007, In : Biochemistry. 46, 23, p. 6871-6882 12 p.

Research output: Contribution to journalArticle

149 Scopus citations

Solution structure of selenoprotein W and NMR analysis of its interaction with 14-3-3 proteins

Aachmann, F. L., Fomenko, D. E., Soragni, A., Gladyshev, V. N. & Dikiy, A., Dec 21 2007, In : Journal of Biological Chemistry. 282, 51, p. 37036-37044 9 p.

Research output: Contribution to journalArticle

72 Scopus citations

Specialized Methods

Raza, A., Engen, J. R., Ragsdale, S. W., Seravalli, J., Becker, D. F., Fomenko, D. E., Gladyshev, V. N., Thomas, M. P., Schultz, H. D. & Grisham, M. B., Mar 14 2007, Redox Biochemistry. John Wiley & Sons, Inc., p. 227-284 58 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Structure and kinetics of monofunctional proline dehydrogenase from Thermus thermophilus

White, T. A., Krishnan, N., Becker, D. F. & Tanner, J. J., May 11 2007, In : Journal of Biological Chemistry. 282, 19, p. 14316-14327 12 p.

Research output: Contribution to journalArticle

75 Scopus citations

The characterization and role of zinc binding in yeast Cox4

Coyne, H. J., Ciofi-Baffoni, S., Banci, L., Bertini, I., Zhang, L., George, G. N. & Winge, D. R., Mar 23 2007, In : Journal of Biological Chemistry. 282, 12, p. 8926-8934 9 p.

Research output: Contribution to journalArticle

27 Scopus citations

The distribution of sexually-transmitted Human Papillomaviruses in HIV positive and negative patients in Zambia, Africa

Ng'andwe, C., Lowe, J. J., Richards, P. J., Hause, L., Wood, C. & Angeletti, P. C., Jul 16 2007, In : BMC Infectious Diseases. 7, 77.

Research output: Contribution to journalArticle

47 Scopus citations
28 Scopus citations
20 Scopus citations

Traditional practices and exposure to bodily fluids in Lusaka, Zambia

Wojcicki, J. M., Kankasa, C., Mitchell, C. & Wood, C., Jan 2007, In : Tropical Medicine and International Health. 12, 1, p. 150-155 6 p.

Research output: Contribution to journalArticle

12 Scopus citations

Vectorial acylation: Linking fatty acid transport and activation to metabolic trafficking

Black, P. N. & DiRusso, C. C., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 127-138 12 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

27 Scopus citations

XAFS at the Canadian light source

Jiang, D. T., Chen, N., Zhang, L., Malgorzata, K., Wright, G., Igarashi, R., Beauregard, D., Kirkham, M. & McKibben, M., 2007, X-RAY ABSORPTION FINE STRUCTURE - XAFS13: 13th International Conference. p. 893-895 3 p. (AIP Conference Proceedings; vol. 882).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations
132 Scopus citations
2008

13C NMR characterization of an exchange reaction between CO and CO2 catalyzed by carbon monoxide dehydrogenase

Seravalli, J. & Ragsdale, S. W., Jul 1 2008, In : Biochemistry. 47, 26, p. 6770-6781 12 p.

Research output: Contribution to journalArticle

30 Scopus citations

A functional link between housekeeping selenoproteins and phase II enzymes

Sengupta, A., Carlson, B. A., Weaver, J. A., Novoselov, S. V., Fomenko, D. E., Gladyshev, V. N. & Hatfield, D. L., Jul 1 2008, In : Biochemical Journal. 413, 1, p. 151-161 11 p.

Research output: Contribution to journalArticle

29 Scopus citations

Analysis of methionine/selenomethionine oxidation and methionine sulfoxide reductase function using methionine-rich proteins and antibodies against their oxidized forms

Dung, T. L., Liang, X., Fomenko, D. E., Raza, A. S., Chong, C. K., Carlson, B. A., Hatfield, D. L. & Gladyshev, V. N., Jun 24 2008, In : Biochemistry. 47, 25, p. 6685-6694 10 p.

Research output: Contribution to journalArticle

29 Scopus citations

An inositolphosphorylceramide synthase is involved in regulation of plant programmed cell death associated with defense in arabidopsis

Wang, W., Yang, X., Tangchaiburana, S., Ndeh, R., Markham, J. E., Tsegaye, Y., Dunn, T. M., Wang, G. L., Bellizzi, M., Parsons, J. F., Morrissey, D., Bravo, J. E., Lynch, D. V. & Xiao, S., Nov 2008, In : Plant Cell. 20, 11, p. 3163-3179 17 p.

Research output: Contribution to journalArticle

137 Scopus citations

Chapter 3: Programmed Cell Death in Plants. New Insights into Redox Regulation and the Role of Hydrogen Peroxide

Gadjev, I., Stone, J. M. & Gechev, T. S., 2008, International Review of Cell and Molecular Biology. C ed. p. 87-144 58 p. (International Review of Cell and Molecular Biology; vol. 270, no. C).

Research output: Chapter in Book/Report/Conference proceedingChapter

209 Scopus citations

Characterization of a Helicobacter hepaticus putA mutant strain in host colonization and oxidative stress

Krishnan, N., Doster, A. R., Duhamel, G. E. & Becker, D. F., Jul 2008, In : Infection and immunity. 76, 7, p. 3037-3044 8 p.

Research output: Contribution to journalArticle

32 Scopus citations

Coa2 is an assembly factor for yeast cytochrome c oxidase biogenesis that facilitates the maturation of Cox1

Pierrel, F., Khalimonchuk, O., Cobine, P. A., Bestwick, M. & Winge, D. R., Aug 2008, In : Molecular and cellular biology. 28, 16, p. 4927-4939 13 p.

Research output: Contribution to journalArticle

37 Scopus citations

Comparative metabolite profiling of carboxylic acids in rat urine by CE-ESI MS/MS through positively pre-charged and 2H-coded derivatization

Yang, W. C., Regnier, F. E. & Adamec, J., 2008, In : ELECTROPHORESIS. 29, 22, p. 4549-4560 12 p.

Research output: Contribution to journalArticle

36 Scopus citations

Comparison of iodine K-edge subtraction and fluorescence subtraction imaging in an animal system

Zhang, H., Zhu, Y., Bewer, B., Zhang, L., Korbas, M., Pickering, I. J., George, G. N., Gupta, M. & Chapman, D., Sep 1 2008, In : Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. 594, 2, p. 283-291 9 p.

Research output: Contribution to journalArticle

5 Scopus citations

Copper sensing function of Drosophila metal-responsive transcription factor-1 is mediated by a tetranuclear Cu(I) cluster

Chen, X., Hua, H., Balamurugan, K., Kong, X., Zhang, L., George, G. N., Georgiev, O., Schaffner, W. & Giedroc, D. P., May 2008, In : Nucleic acids research. 36, 9, p. 3128-3138 11 p.

Research output: Contribution to journalArticle

27 Scopus citations

Cysteine pKa depression by a protonated glutamic acid in human DJ-1

Witt, A. C., Lakshminarasimhan, M., Remington, B. C., Hasim, S., Pozharski, E. & Wilson, M. A., Jul 15 2008, In : Biochemistry. 47, 28, p. 7430-7440 11 p.

Research output: Contribution to journalArticle

78 Scopus citations

Cysteine pKa depression by a protonated glutamic acid in human DJ-1 (Biochemistry (2008) 47, 28, (7430-7440))

Witt, A. C., Lakshminarasimhan, M., Remington, B. C., Hasim, S., Pozharski, E. & Wilson, M. A., Aug 5 2008, In : Biochemistry. 47, 31, p. 8246 1 p.

Research output: Contribution to journalComment/debate