Research Output

Article

13C NMR characterization of an exchange reaction between CO and CO2 catalyzed by carbon monoxide dehydrogenase

Seravalli, J. & Ragsdale, S. W., Jul 1 2008, In : Biochemistry. 47, 26, p. 6770-6781 12 p.

Research output: Contribution to journalArticle

30 Scopus citations

15N CEST data and traditional model-free analysis capture fast internal dynamics of DJ-1

Catazaro, J., Andrews, T., Milkovic, N. M., Lin, J., Lowe, A. J., Wilson, M. A. & Powers, R., Feb 1 2018, In : Analytical Biochemistry. 542, p. 24-28 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

2.4 Å resolution crystal structure of the prototypical hormone-processing protease Kex2 in complex with an Ala-Lys-Arg boronic acid inhibitor

Holyoak, T., Wilson, M. A., Fenn, T. D., Kettner, C. A., Petsko, G. A., Fuller, R. S. & Ringe, D., Jun 10 2003, In : Biochemistry. 42, 22, p. 6709-6718 10 p.

Research output: Contribution to journalArticle

83 Scopus citations

3-O sulfation of heparin leads to hepatotropism and longer circulatory half-life

Miller, C. M., Xu, Y., Kudrna, K. M., Hass, B. E., Kellar, B. M., Egger, A. W., Liu, J. & Harris, E. N., Jul 2018, In : Thrombosis Research. 167, p. 80-87 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

5-Hydroxydecanoate is metabolised in mitochondria and creates a rate-limiting bottleneck for β-oxidation of fatty acids

Hanley, P. J., Dröse, S., Brandt, U., Lareau, R. A., Banerjee, A. L., Srivastava, D. K., Banaszak, L. J., Barycki, J. J., Van Veldhoven, P. P. & Daut, J., Jan 15 2005, In : Journal of Physiology. 562, 2, p. 307-318 12 p.

Research output: Contribution to journalArticle

79 Scopus citations

A 4-selenocysteine, 2-selenocysteine insertion sequence (SECIS) element methionine sulfoxide reductase from Metridium senile reveals a non-catalytic function of selenocysteines

Lee, B. C., Lobanov, A. V., Marino, S. M., Kaya, A., Seravalli, J., Hatfield, D. L. & Gladyshev, V. N., May 27 2011, In : Journal of Biological Chemistry. 286, 21, p. 18747-18755 9 p.

Research output: Contribution to journalArticle

16 Scopus citations

ABCB19/PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis

Titapiwatanakun, B., Blakeslee, J. J., Bandyopadhyay, A., Yang, H., Mravec, J., Sauer, M., Cheng, Y., Adamec, J., Nagashima, A., Geisler, M., Sakai, T., Friml, J., Peer, W. A. & Murphy, A. S., Jan 2009, In : Plant Journal. 57, 1, p. 27-44 18 p.

Research output: Contribution to journalArticle

165 Scopus citations

Aberrant energy metabolism and redox balance in seizure onset zones of epileptic patients

Grove, R. A., Madhavan, D., Boone, C. H. T., Braga, C. P., Papackova, Z., Kyllo, H., Samson, K., Simeone, K., Simeone, T., Helikar, T., Hanson, C. K. & Adamec, J., Jul 15 2020, In : Journal of Proteomics. 223, 103812.

Research output: Contribution to journalArticle

A cadmium-transporting P1B-type ATPase in yeast Saccharomyces cerevisiae

Adle, D. J., Sinani, D., Kim, H. & Lee, J., Jan 12 2007, In : Journal of Biological Chemistry. 282, 2, p. 947-955 9 p.

Research output: Contribution to journalArticle

43 Scopus citations

A cell simulator platform: The cell collective

Helikar, T., Kowal, B. & Rogers, J. A., May 2013, In : Clinical Pharmacology and Therapeutics. 93, 5, p. 393-395 3 p.

Research output: Contribution to journalArticle

15 Scopus citations

A characterization of subterranean termites in Nebraska using micro-morphological and molecular techniques

Husen, T. J., Kamble, S. T. & Stone, J. M., 2006, In : Sociobiology. 48, 1, p. 247-265 19 p.

Research output: Contribution to journalArticle

9 Scopus citations

A Chemical Approach for the Detection of Protein Sulfinylation

Lo Conte, M., Lin, J., Wilson, M. A. & Carroll, K. S., Aug 21 2015, In : ACS chemical biology. 10, 8, p. 1825-1830 6 p.

Research output: Contribution to journalArticle

33 Scopus citations

A comparative study of HIV-1 clade C env evolution in a Zambian infant with an infected rhesus macaque during disease progression

Tso, F. Y., Hoffmann, F. G., Tully, D. C., Lemey, P., Rasmussen, R. A., Zhang, H., Ruprecht, R. M. & Wood, C., Sep 2009, In : AIDS. 23, 14, p. 1817-1828 12 p.

Research output: Contribution to journalArticle

6 Scopus citations

A Comprehensive, Multi-Scale Dynamical Model of ErbB Receptor Signal Transduction in Human Mammary Epithelial Cells

Helikar, T., Kochi, N., Kowal, B., Dimri, M., Naramura, M., Raja, S. M., Band, V., Band, H. & Rogers, J. A., Apr 18 2013, In : PloS one. 8, 4, e61757.

Research output: Contribution to journalArticle

27 Scopus citations

A conserved cis-proline precludes metal binding by the active site thiolates in members of the thioredoxin family of proteins

Su, D., Berndt, C., Fomenko, D. E., Holmgren, A. & Gladyshev, V. N., Jun 12 2007, In : Biochemistry. 46, 23, p. 6903-6910 8 p.

Research output: Contribution to journalArticle

47 Scopus citations

A conserved sequence in caveolin-1 is both necessary and sufficient for caveolin polarity and cell directional migration

Sun, X. H., Liu, Z. Y., Chen, H., Beardsley, A. R., Qi, Q. & Liu, J., Nov 19 2009, In : FEBS Letters. 583, 22, p. 3681-3689 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

Activation and degradation of open reading frame 45 by the replication and transcription activator of Kaposi’s sarcoma-associated herpesvirus

Wang, Y., Yu, K., Pei, X., Zhang, T., Guo, Y., Wood, C. & Wang, J., Jul 1 2015, In : Journal of General Virology. 96, 7, p. 1883-1889 7 p.

Research output: Contribution to journalArticle

4 Scopus citations
6 Scopus citations

Activation of bovine immunodeficiency-like virus expression by bovine herpesvirus type 1

Geng, Y., Kashanchi, F. & Wood, C., Apr 1992, In : Virology. 187, 2, p. 832-836 5 p.

Research output: Contribution to journalArticle

9 Scopus citations

Activation of ERK and NF-κB during HARE-mediated heparin uptake require only one of the four endocytic motifs

Pandey, M. S., Miller, C. M., Harris, E. N. & Weigel, P. H., Apr 2016, In : PloS one. 11, 4, e0154124.

Research output: Contribution to journalArticle

5 Scopus citations

Activation of HHV-8 by HIV-1 tat

Harrington, W., Sieczkowski, L., Sosa, C., Chan-a-Sue, S., Cai, J. P., Cabral, L. & Wood, C., Mar 15 1997, In : Lancet. 349, 9054, p. 774-775 2 p.

Research output: Contribution to journalArticle

98 Scopus citations

Activation of methyl-SCoM reductase to high specific activity after treatment of whole cells with sodium sulfide

Becker, D. F. & Ragsdale, S. W., Feb 24 1998, In : Biochemistry. 37, 8, p. 2639-2647 9 p.

Research output: Contribution to journalArticle

36 Scopus citations

Activation of the Oryza sativa non-symbiotic haemoglobin-2 promoter by the cytokinin-regulated transcription factor, ARR1

Ross, E. J. H., Stone, J. M., Elowsky, C. G., Arredondo-Peter, P., Klucas, R. V. & Sarath, G., Aug 2004, In : Journal of experimental botany. 55, 403, p. 1721-1731 11 p.

Research output: Contribution to journalArticle

92 Scopus citations

Activity of the Arabidopsis RD29A and RD29B promoter elements in soybean under water stress

Bihmidine, S., Lin, J., Stone, J. M., Awada, T., Specht, J. E. & Clemente, T. E., Jan 2013, In : Planta. 237, 1, p. 55-64 10 p.

Research output: Contribution to journalArticle

31 Scopus citations

A cysteine endopeptidase isolated from castor bean endosperm microbodies processes the glyoxysomal malate dehydrogenase precursor protein

Gietl, C., Wimmer, B., Adamec, J. & Kalousek, F., Mar 1997, In : Plant physiology. 113, 3, p. 863-871 9 p.

Research output: Contribution to journalArticle

Open Access
29 Scopus citations

Adenosine has two faces: Regionally dichotomous adenosine tone in a model of epilepsy with comorbid sleep disorders

Warren, T. J., Simeone, T. A., Smith, D. D., Grove, R., Adamec, J., Samson, K. K., Roundtree, H. M., Madhavan, D. & Simeone, K. A., Jun 2018, In : Neurobiology of Disease. 114, p. 45-52 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

A determinant of substrate specificity predicted from the Acyl-Acyl carrier protein desaturase of developing cat's claw seed

Cahoon, E. B., Shah, S., Shanklin, J. & Browse, J., 1998, In : Plant physiology. 117, 2, p. 593-598 6 p.

Research output: Contribution to journalArticle

Open Access
73 Scopus citations
13 Scopus citations

Affinity isolation of a cold-adapted enzyme: Lactate dehydrogenase from Bacillus psychrosaccharolyticus

Nandakumar, R. & Mattiasson, B., Nov 1998, In : Bioseparation. 7, 6, p. 327-331 5 p.

Research output: Contribution to journalArticle

3 Scopus citations

Affinity labeling fatty acyl-CoA synthetase with 9-p-azidophenoxy nonanoic acid and the identification of the fatty acid-binding site

Black, P. N., DiRusso, C. C., Sherin, D., MacColl, R., Knudsen, J. & Weimar, J. D., Dec 8 2000, In : Journal of Biological Chemistry. 275, 49, p. 38547-38553 7 p.

Research output: Contribution to journalArticle

33 Scopus citations
35 Scopus citations

Affinity labeling of rat GST A1-1 by 3β-(iodoacetoxy)dehydroisoandrosterone

Colman, R. F. & Barycki, J. J., 1999, In : Clinical Chemistry and Enzymology Communications. 8, 4-6, p. 255-259 5 p.

Research output: Contribution to journalArticle

A functional link between housekeeping selenoproteins and phase II enzymes

Sengupta, A., Carlson, B. A., Weaver, J. A., Novoselov, S. V., Fomenko, D. E., Gladyshev, V. N. & Hatfield, D. L., Jul 1 2008, In : Biochemical Journal. 413, 1, p. 151-161 11 p.

Research output: Contribution to journalArticle

29 Scopus citations
44 Scopus citations

A high-throughput fatty acid profiling screen reveals novel variations in fatty acid biosynthesis in Chlamydomonas reinhardtii and related algae

Pflaster, E. L., Schwabe, M. J., Becker, J., Wilkinson, M. S., Parmer, A., Clemente, T. E., Cahoon, E. B. & Riekhof, W. R., Nov 1 2014, In : Eukaryotic Cell. 13, 11, p. 1431-1438 8 p.

Research output: Contribution to journalArticle

9 Scopus citations

A hybrid protein of the amino-terminal fragment of urokinase and mutant plasminogen activator inhibitor-2 efficiently inhibits tumor cell invasion and metastasis

Wang, X., Hou, M., Tan, L., Sun, X., Zhang, Y., Li, P. & Zhu, Y., Feb 2005, In : Journal of Cancer Research and Clinical Oncology. 131, 2, p. 129-136 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

A large, consistent plasma proteomics data set from prospectively collected breast cancer patient and healthy volunteer samples

Riley, C. P., Zhang, X., Nakshatri, H., Schneider, B., Regnier, F. E., Adamec, J. & Buck, C., May 27 2011, In : Journal of Translational Medicine. 9, 80.

Research output: Contribution to journalArticle

12 Scopus citations
8 Scopus citations

A live-cell high-throughput screening assay for identification of fatty acid uptake inhibitors

Li, H., Black, P. N. & Dirusso, C. C., Jan 1 2005, In : Analytical Biochemistry. 336, 1, p. 11-19 9 p.

Research output: Contribution to journalArticle

33 Scopus citations

A low temperature microbial biosensor using immobilised psychrophilic bacteria

Nandakumar, R. & Mattiasson, B., 1999, In : Biotechnology Techniques. 13, 10, p. 689-693 5 p.

Research output: Contribution to journalArticle

4 Scopus citations

Alterations in energy/redox metabolism induced by mitochondrial and environmental toxins: A specific role for glucose-6-phosphate-dehydrogenase and the pentose phosphate pathway in paraquat toxicity

Lei, S., Zavala-Flores, L., Garcia-Garcia, A., Nandakumar, R., Huang, Y., Madayiputhiya, N., Stanton, R. C., Dodds, E. D., Powers, R. & Franco, R., Sep 19 2014, In : ACS chemical biology. 9, 9, p. 2032-2048 17 p.

Research output: Contribution to journalArticle

42 Scopus citations

Altered microglial copper homeostasis in a mouse model of Alzheimer's disease

Zheng, Z., White, C., Lee, J., Peterson, T. S., Bush, A. I., Sun, G. Y., Weisman, G. A. & Petris, M. J., Sep 2010, In : Journal of Neurochemistry. 114, 6, p. 1630-1638 9 p.

Research output: Contribution to journalArticle

52 Scopus citations

A mass spectrometry-based method for the assay of ceramide synthase substrate specificity

Luttgeharm, K. D., Cahoon, E. B. & Markham, J. E., Jun 1 2015, In : Analytical Biochemistry. 478, p. 96-101 6 p.

Research output: Contribution to journalArticle

7 Scopus citations

A mechanistic computational model reveals that plasticity of CD4+ T cell differentiation is a function of cytokine composition and dosage

Puniya, B. L., Todd, R. G., Mohammed, A., Brown, D. M., Barberis, M. & Helikar, T., Aug 2 2018, In : Frontiers in Physiology. 9, AUG, 878.

Research output: Contribution to journalArticle

6 Scopus citations

A method for extracting high-molecular-weight deoxyribonucleic acid from fungi

Specht, C. A., DiRusso, C. C., Novotny, C. P. & Ullrich, R. C., Jan 1 1982, In : Analytical Biochemistry. 119, 1, p. 158-163 6 p.

Research output: Contribution to journalArticle

162 Scopus citations

A microbial biosensor based on Yarrowia lipolytica for the off-line determination of middle-chain alkanes

Alkasrawi, M., Nandakumar, R., Margesin, R., Schinner, F. & Mattiasson, B., Dec 1999, In : Biosensors and Bioelectronics. 14, 8-9, p. 723-727 5 p.

Research output: Contribution to journalArticle

26 Scopus citations

A microbial biosensor using Pseudomonas putida cells immobilised in an expanded bed reactor for the on-line monitoring of phenolic compounds

Nandakumar, R. & Mattiasson, B., 1999, In : Analytical Letters. 32, 12, p. 2379-2393 15 p.

Research output: Contribution to journalArticle

11 Scopus citations

A model policy addressing mistreatment of medical students

Strong, C., Wall, H. P., Jameson, V., Horn, H. R., Black, P. N., Scott, S. & Brown, S. C., 1996, In : Journal of Clinical Ethics. 7, 4, p. 341-346 6 p.

Research output: Contribution to journalArticle

6 Scopus citations

A molecular communication system model for particulate drug delivery systems

Chahibi, Y., Pierobon, M., Song, S. O. & Akyildiz, I. F., Dec 2013, In : IEEE Transactions on Biomedical Engineering. 60, 12, p. 3468-3483 16 p., 6548006.

Research output: Contribution to journalArticle

98 Scopus citations

A multienzyme complex channels substrates and electrons through acetyl-coA and methane biosynthesis pathways in Methanosarcina

Lieber, D. J., Catlett, J., Madayiputhiya, N., Nandakumar, R., Lopez, M. M., Metcalf, W. W. & Buan, N. R., Sep 18 2014, In : PloS one. 9, 9, e107563.

Research output: Contribution to journalArticle

6 Scopus citations