Research Output

2020

Viral and immunological analytes are poor predictors of the clinical treatment response in kaposi’s sarcoma patients

Lidenge, S. J., Tso, F. Y., Mortazavi, Y., Ngowi, J. R., Shea, D. M., Mwaiselage, J., Wood, C. & West, J. T., Jun 2020, In : Cancers. 12, 6, p. 1-15 15 p., 1594.

Research output: Contribution to journalArticle

Open Access
2019

Algal-based biofuel generation through flue gas and wastewater utilization: a sustainable prospective approach

Kothari, R., Ahmad, S., Pathak, V. V., Pandey, A., Kumar, A., Shankarayan, R., Black, P. N. & Tyagi, V. V., 2019, (Accepted/In press) In : Biomass Conversion and Biorefinery.

Research output: Contribution to journalReview article

An Information Theoretic Framework to Analyze Molecular Communication Systems Based on Statistical Mechanics

Akyildiz, I. F., Pierobon, M. & Balasubramaniam, S., Jul 2019, In : Proceedings of the IEEE. 107, 7, p. 1230-1255 26 p., 8768452.

Research output: Contribution to journalArticle

7 Scopus citations

A novel functional role of nickel in sperm motility and eukaryotic cell growth

Bian, J., Shi, X., Li, Q., Zhao, M., Wang, L., Lee, J., Tao, M. & Wu, X., Jul 2019, In : Journal of Trace Elements in Medicine and Biology. 54, p. 142-149 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

A Panel of Protein Kinase Chemosensors Distinguishes Different Types of Fatty Liver Disease

Beck, J. R., Cabral, F., Rasineni, K., Casey, C. A., Harris, E. N. & Stains, C. I., Sep 17 2019, In : Biochemistry. 58, 37, p. 3911-3917 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

A Plant Immune Receptor Degraded by Selective Autophagy

Yang, F., Kimberlin, A. N., Elowsky, C. G., Liu, Y., Gonzalez-Solis, A., Cahoon, E. B. & Alfano, J. R., Jan 7 2019, In : Molecular Plant. 12, 1, p. 113-123 11 p.

Research output: Contribution to journalArticle

15 Scopus citations

Applying molecular communication theory to multi-scale integrated models of biological pathways

Sakkaff, Z., Unluturk, B. D. & Pierobon, M., Sep 25 2019, Proceedings of the 6th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2019. Association for Computing Machinery, Inc, 3345495. (Proceedings of the 6th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bioprocesses for wastewater reuse: Closed- loop system for energy options

Azam, R., Pandey, A., Black, P. N., Tyagi, V. V. & Kothari, R., Mar 9 2019, Water Conservation, Recycling and Reuse: Issues and Challenges. Springer Singapore, p. 121-145 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalytically inactive Dnmt3b rescues mouse embryonic development by accessory and repressive functions

Nowialis, P., Lopusna, K., Opavska, J., Haney, S. L., Abraham, A., Sheng, P., Riva, A., Natarajan, A., Guryanova, O., Simpson, M., Hlady, R., Xie, M. & Opavsky, R., Dec 1 2019, In : Nature communications. 10, 1, 4374.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Changes in lipid classes of Drosophila melanogaster in response to selection for three stress traits

Ko, L., Harshman, L., Hangartner, S., Hoffmann, A., Kachman, S. & Black, P., Aug 1 2019, In : Journal of Insect Physiology. 117, 103890.

Research output: Contribution to journalArticle

Changes in students’ mental models from computational modeling of gene regulatory networks

Dauer, J. T., Bergan-Roller, H. E., King, G. P., Kjose, M. K., Galt, N. J. & Helikar, T., Dec 1 2019, In : International Journal of STEM Education. 6, 1, 38.

Research output: Contribution to journalArticle

Open Access

Chinese scientists and US leadership in the life sciences

Signatories to the Statement, Nov 1 2019, In : Nature Biotechnology. 37, 11, p. 1261-1263 3 p.

Research output: Contribution to journalLetter

4 Scopus citations

Coordination promiscuity guarantees metal substrate selection in transmembrane primary-active Zn2+ pumps

Gallenito, M. J., Irvine, G. W., Zhang, L. & Meloni, G., 2019, In : Chemical Communications. 55, 73, p. 10844-10847 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Depletion of mitochondrial protease OMA1 alters proliferative properties and promotes metastatic growth of breast cancer cells

Daverey, A., Levytskyy, R. M., Stanke, K. M., Viana, M. P., Swenson, S., Hayward, S. L., Narasimhan, M., Khalimonchuk, O. & Kidambi, S., Dec 1 2019, In : Scientific reports. 9, 1, 14746.

Research output: Contribution to journalArticle

Open Access

Dynamic and structural differences between heme oxygenase-1 and -2 are due to differences in their C-terminal regions

Kochert, B. A., Fleischhacker, A. S., Wales, T. E., Becker, D. F., Engen, J. R. & Ragsdale, S. W., May 17 2019, In : Journal of Biological Chemistry. 294, 20, p. 8259-8272 14 p.

Research output: Contribution to journalArticle

2 Scopus citations

Effect of nanoformulated copper/zinc superoxide dismutase on chronic ethanol-induced alterations in liver and adipose tissue

Natarajan, G., Perriotte-Olson, C., Casey, C. A., Donohue, T. M., Talmon, G. A., Harris, E. N., Kabanov, A. V. & Saraswathi, V., Sep 2019, In : Alcohol. 79, p. 71-79 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Engineering and characterization of hybrid carboxylic acid reductases

Kramer, L., Le, X., Hankore, E. D., Wilson, M. A., Guo, J. & Niu, W., Oct 10 2019, In : Journal of Biotechnology. 304, p. 52-56 5 p.

Research output: Contribution to journalArticle

2 Scopus citations

Experimental studies on zeta potential of flocculants for harvesting of algae

Pandey, A., Pathak, V. V., Kothari, R., Black, P. N. & Tyagi, V. V., Feb 1 2019, In : Journal of Environmental Management. 231, p. 562-569 8 p.

Research output: Contribution to journalArticle

17 Scopus citations

Expression of the Arabidopsis WRINKLED 1 transcription factor leads to higher accumulation of palmitate in soybean seed

Vogel, P. A., Bayon de Noyer, S., Park, H., Nguyen, H., Hou, L., Changa, T., Khang, H. L., Ciftci, O. N., Wang, T., Cahoon, E. B. & Clemente, T. E., Jul 2019, In : Plant Biotechnology Journal. 17, 7, p. 1369-1379 11 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Extraction of astaxanthin from engineered Camelina sativa seed using ethanol-modified supercritical carbon dioxide

Xie, L., Cahoon, E., Zhang, Y. & Ciftci, O. N., Jan 2019, In : Journal of Supercritical Fluids. 143, p. 171-178 8 p.

Research output: Contribution to journalArticle

8 Scopus citations

FAD2 gene radiation and positive selection contributed to polyacetylene metabolism evolution in campanulids

Feng, T., Yang, Y., Busta, L., Cahoon, E. B., Wang, H. & Lü, S., 2019, In : Plant physiology. 181, 2, p. 714-728 15 p.

Research output: Contribution to journalArticle

Open Access

Fatty acid transport protein 2 reprograms neutrophils in cancer

Veglia, F., Tyurin, V. A., Blasi, M., De Leo, A., Kossenkov, A. V., Donthireddy, L., To, T. K. J., Schug, Z., Basu, S., Wang, F., Ricciotti, E., DiRusso, C., Murphy, M. E., Vonderheide, R. H., Lieberman, P. M., Mulligan, C., Nam, B., Hockstein, N., Masters, G., Guarino, M. & 5 others, Lin, C., Nefedova, Y., Black, P., Kagan, V. E. & Gabrilovich, D. I., May 2 2019, In : Nature. 569, 7754, p. 73-78 6 p.

Research output: Contribution to journalArticle

59 Scopus citations

Field performance of terpene-producing Camelina sativa

Augustin, J. M., Brock, J. R., Augustin, M. M., Wellinghoff, R. L., Shipp, M., Higashi, Y., Kumssa, T. T., Cahoon, E. B. & Kutchan, T. M., Sep 15 2019, In : Industrial Crops and Products. 136, p. 50-58 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Focus issue editorial: Biotic stress

Jin, H., Mitchum, M., Panstruga, R. & Stone, J., Apr 2019, In : Plant physiology. 179, 4, p. 1193-1195 3 p.

Research output: Contribution to journalArticle

Open Access

Identification of Climate and Genetic Factors That Control Fat Content and Fatty Acid Composition of Theobroma cacao L. Beans

Mustiga, G. M., Morrissey, J., Stack, J. C., DuVal, A., Royaert, S., Jansen, J., Bizzotto, C., Villela-Dias, C., Mei, L., Cahoon, E. B., Seguine, E., Marelli, J. P. & Motamayor, J. C., Oct 14 2019, In : Frontiers in Plant Science. 10, 1159.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Influence of oxidative damage to proteins on meat tenderness using a proteomics approach

Malheiros, J. M., Braga, C. P., Grove, R. A., Ribeiro, F. A., Calkins, C. R., Adamec, J. & Chardulo, L. A. L., Feb 2019, In : Meat Science. 148, p. 64-71 8 p.

Research output: Contribution to journalArticle

18 Scopus citations

Isolation of specific neuron populations from roundworm caenorhabditis elegans

Germany, E. M., Zahayko, N. & Khalimonchuk, O., Aug 2019, In : Journal of Visualized Experiments. 2019, 150, e60145.

Research output: Contribution to journalArticle

Kaposi's sarcoma-associated herpesvirus seropositivity is associated with type 2 diabetes mellitus: A case–control study in Xinjiang, China

Cui, M., Fang, Q., Zheng, J., Shu, Z., Chen, Y., Fan, Y., Zhao, J., Wood, C., Zhang, T. & Zeng, Y., Mar 2019, In : International Journal of Infectious Diseases. 80, p. 73-79 7 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Ligand binding and signaling of HARE/Stabilin-2

Harris, E. N. & Cabral, F., Jul 2019, In : Biomolecules. 9, 7, 273.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

LncRNA Meg3 protects endothelial function by regulating the DNA damage response

Ali, M. S. S. H., Cheng, X., Moran, M., Haemmig, S., Naldrett, M. J., Alvarez, S., Feinberg, M. W. & Sun, X., 2019, In : Nucleic acids research. 47, 3

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Longitudinal quantification of adenovirus neutralizing responses in Zambian mother-infant pairs: Impact of HIV-1 infection and its treatment

Privatt, S. R., Bullard, B. L., Weaver, E. A., Wood, C. & West, J. T., Aug 23 2019, In : Vaccine. 37, 36, p. 5177-5184 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Mapping of transgenic alleles in soybean using a nanopore-based sequencing strategy

Li, S., Jia, S., Hou, L., Nguyen, H., Sato, S., Holding, D., Cahoon, E., Zhang, C., Clemente, T. & Yu, B., Aug 1 2019, In : Journal of experimental botany. 70, 15, p. 3825-3833 9 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Methods for determining the reduction potentials of flavin enzymes

Christgen, S. L., Becker, S. M. & Becker, D. F., 2019, Methods in Enzymology. Palfey, B. A. (ed.). Academic Press Inc., p. 1-25 25 p. (Methods in Enzymology; vol. 620).

Research output: Chapter in Book/Report/Conference proceedingChapter

Methylation deficiency of chromatin proteins is a non-mutational and epigenetic-like trait in evolved lines of the archaeon Sulfolobus solfataricus

Johnson, T., Payne, S., Grove, R., McCarthy, S., Oeltjen, E., Mach, C., Adamec, J., Wilson, M. A., Cott, K. V. & Blum, P., May 10 2019, In : Journal of Biological Chemistry. 294, 19, p. 7821-7832 12 p.

Research output: Contribution to journalArticle

3 Scopus citations

Microbiome-gut-brain axis as a biomolecular communication network for the internet of bio-nanothings

Akyildiz, I. F., Chen, J., Ghovanloo, M., Guler, U., Ozkaya-Ahmadov, T., Pierobon, M., Sarioglu, A. F. & Unluturk, B. D., 2019, In : IEEE Access. 7, p. 136161-136175 15 p., 8844707.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis

Dasgupta, M., Budday, D., de Oliveira, S. H. P., Madzelan, P., Marchany-Rivera, D., Seravalli, J., Hayes, B., Sierra, R. G., Boutet, S., Hunter, M. S., Alonso-Mori, R., Batyuk, A., Wierman, J., Lyubimov, A., Brewster, A. S., Sauter, N. K., Applegate, G. A., Tiwari, V. K., Berkowitz, D. B., Thompson, M. C. & 5 others, Cohen, A. E., Fraser, J. S., Wall, M. E., van den Bedem, H. & Wilson, M. A., Dec 17 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 51, p. 25634-25640 7 p.

Research output: Contribution to journalArticle

2 Scopus citations

Modelling activities integrating construction and simulation supported explanatory and evaluative reasoning

King, G. P., Bergan-Roller, H., Galt, N., Helikar, T. & Dauer, J. T., 2019, In : International Journal of Science Education. 41, 13, p. 1764-1786 23 p.

Research output: Contribution to journalArticle

Molecular Communications and Networking [Scanning the Issue]

Akyildiz, I. F., Pierobon, M. & Balasubramaniam, S., Jul 2019, In : Proceedings of the IEEE. 107, 7, p. 1227-1229 3 p., 8768465.

Research output: Contribution to journalArticle

Molecular tools enabling pennycress (Thlaspi arvense) as a model plant and oilseed cash cover crop

McGinn, M., Phippen, W. B., Chopra, R., Bansal, S., Jarvis, B. A., Phippen, M. E., Dorn, K. M., Esfahanian, M., Nazarenus, T. J., Cahoon, E. B., Durrett, T. P., Marks, M. D. & Sedbrook, J. C., Apr 2019, In : Plant Biotechnology Journal. 17, 4, p. 776-788 13 p.

Research output: Contribution to journalArticle

16 Scopus citations

Moving Forward with Molecular Communication: From Theory to Human Health Applications

Akyildiz, I. F., Pierobon, M. & Balasubramaniam, S., May 2019, In : Proceedings of the IEEE. 107, 5, p. 858-865 8 p., 8710366.

Research output: Contribution to journalReview article

14 Scopus citations

Nanonetworks in biomedical applications

Marzo, J. L., Jornet, J. M. & Pierobon, M., 2019, In : Current drug targets. 20, 8, p. 800-807 8 p.

Research output: Contribution to journalArticle

5 Scopus citations

Nature-Guided Synthesis of Advanced Bio-Lubricants

Romsdahl, T., Shirani, A., Minto, R. E., Zhang, C., Cahoon, E. B., Chapman, K. D. & Berman, D., Dec 1 2019, In : Scientific reports. 9, 1, 11711.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Physiological and functional aspects of metal-binding protein associated with mercury in the liver tissue of pirarucu (Arapaima gigas) from the Brazilian Amazon

Cunha Bataglioli, I. D., Souza Vieira, J. C., Vitor de Queiroz, J., da Silva Fernandes, M., Bittarello, A. C., Braga, C. P., Rabelo Buzalaf, M. A., Adamec, J., Zara, L. F. & Magalhães Padilha, P. D., Dec 2019, In : Chemosphere. 236, 124320.

Research output: Contribution to journalArticle

3 Scopus citations

Proteolytic regulation of mitochondrial dynamics

Dietz, J. V., Bohovych, I., Viana, M. P. & Khalimonchuk, O., Nov 2019, In : Mitochondrion. 49, p. 289-304 16 p.

Research output: Contribution to journalReview article

4 Scopus citations

Publisher Correction: Sphingolipid biosynthesis modulates plasmodesmal ultrastructure and phloem unloading (Nature Plants, (2019), 5, 6, (604-615), 10.1038/s41477-019-0429-5)

Yan, D., Yadav, S. R., Paterlini, A., Nicolas, W. J., Petit, J. D., Brocard, L., Belevich, I., Grison, M. S., Vaten, A., Karami, L., el-Showk, S., Lee, J. Y., Murawska, G. M., Mortimer, J., Knoblauch, M., Jokitalo, E., Markham, J. E., Bayer, E. M. & Helariutta, Y., Sep 1 2019, In : Nature Plants. 5, 9, p. 1023 1 p.

Research output: Contribution to journalComment/debate

Open Access

Redox Regulation of the Mitochondrial Quality Control Protease Oma1

Bohovych, I., Dietz, J. V., Swenson, S., Zahayko, N. & Khalimonchuk, O., Aug 20 2019, In : Antioxidants and Redox Signaling. 31, 6, p. 429-443 15 p.

Research output: Contribution to journalReview article

4 Scopus citations
4 Scopus citations

Relationship between the cervical microbiome, HIV Status, and precancerous lesions

Klein, C., Gonzalez, D., Samwel, K., Kahesa, C., Mwaiselage, J., Aluthge, N., Fernando, S., West, J. T., Wood, C. & Angeletti, P. C., Jan 1 2019, In : mBio. 10, 1, e02785-18.

Research output: Contribution to journalArticle

Open Access
11 Scopus citations

Remodeling of chlamydomonas metabolism using synthetic inducers results in lipid storage during growth

Wase, N., Tu, B., Rasineni, G. K., Cerny, R., Grove, R., Adamec, J., Black, P. N. & DiRusso, C. C., Nov 2019, In : Plant physiology. 181, 3, p. 1029-1049 21 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations