Research Output

2013

The sixteenth iron in the nitrogenase MoFe protein

Zhang, L., Kaiser, J. T., Meloni, G., Yang, K. Y., Spatzal, T., Andrade, S. L. A., Einsle, O., Howard, J. B. & Rees, D. C., Sep 27 2013, In : Angewandte Chemie - International Edition. 52, 40, p. 10529-10532 4 p.

Research output: Contribution to journalArticle

20 Scopus citations

Two novel Physcomitrella patens fatty acid elongases (ELOs): Identification and functional characterization

Eiamsa-Ard, P., Kanjana-Opas, A., Cahoon, E. B., Chodok, P. & Kaewsuwan, S., Apr 2013, In : Applied Microbiology and Biotechnology. 97, 8, p. 3485-3497 13 p.

Research output: Contribution to journalArticle

14 Scopus citations

UDP-glucose dehydrogenase activity and optimal downstream cellular function require dynamic reorganization at the dimer-dimer subunit interfaces

Hyde, A. S., Thelen, A. M., Barycki, J. J. & Simpson, M. A., Dec 6 2013, In : Journal of Biological Chemistry. 288, 49, p. 35049-35057 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Variations in the Biological Functions of HIV-1 Clade C Envelope in a SHIV-Infected Rhesus Macaque during Disease Progression

Tso, F. Y., Abrahamyan, L., Hu, S. L., Ruprecht, R. M. & Wood, C., Jun 26 2013, In : PloS one. 8, 6, e66973.

Research output: Contribution to journalArticle

1 Scopus citations

Visualizing networks of mobility in proteins

Wilson, M. A., Sep 2013, In : Nature Methods. 10, 9, p. 835-837 3 p.

Research output: Contribution to journalComment/debate

8 Scopus citations
2012

Antibody responses to lytic and latent human herpesvirus 8 antigens among HIV-infected patients in central China

Zhang, T., He, N., Ding, Y., Jiang, Q. & Wood, C., 2012, In : BioScience Trends. 6, 3, p. 122-129 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Bio-Logic Builder: A Non-Technical Tool for Building Dynamical, Qualitative Models

Helikar, T., Kowal, B., Madrahimov, A., Shrestha, M., Pedersen, J., Limbu, K., Thapa, I., Rowley, T., Satalkar, R., Kochi, N., Konvalina, J. & Rogers, J. A., Oct 17 2012, In : PloS one. 7, 10, e46417.

Research output: Contribution to journalArticle

9 Scopus citations

Coherent anti-stokes Raman scattering and spontaneous Raman spectroscopy and microscopy of microalgae with nitrogen depletion

He, X. N., Allen, J., Black, P. N., Baldacchini, T., Huang, X., Huang, H., Jiang, L. & Lu, Y. F., Nov 1 2012, In : Biomedical Optics Express. 3, 11, p. 2896-2906 11 p.

Research output: Contribution to journalArticle

40 Scopus citations

Comparative analysis of the fusion efficiency elicited by the envelope glycoprotein V1-V5 regions derived from human immunodeficiency virus type 1 transmitted perinatally

Guo, H., Abrahamyan, L. G., Liu, C., Waltke, M., Geng, Y., Chen, Q., Wood, C. & Kong, X., Dec 1 2012, In : Journal of General Virology. 93, PART 12, p. 2635-2645 11 p.

Research output: Contribution to journalArticle

2 Scopus citations
19 Scopus citations

Connections between sphingosine kinase and phospholipase D in the abscisic acid signaling pathway in Arabidopsis

Guo, L., Mishra, G., Markham, J. E., Li, M., Tawfall, A., Welti, R. & Wang, X., Mar 9 2012, In : Journal of Biological Chemistry. 287, 11, p. 8286-8296 11 p.

Research output: Contribution to journalArticle

59 Scopus citations

Conservation of oxidative protein stabilization in an insect homologue of parkinsonism-associated protein DJ-1

Lin, J., Prahlad, J. & Wilson, M. A., May 8 2012, In : Biochemistry. 51, 18, p. 3799-3807 9 p.

Research output: Contribution to journalArticle

16 Scopus citations

Crystal structures and kinetics of monofunctional proline dehydrogenase provide insight into substrate recognition and conformational changes associated with flavin reduction and product release

Luo, M., Arentson, B. W., Srivastava, D., Becker, D. F. & Tanner, J. J., Dec 18 2012, In : Biochemistry. 51, 50, p. 10099-10108 10 p.

Research output: Contribution to journalArticle

25 Scopus citations

Dengue virus infection perturbs lipid homeostasis in infected mosquito cells

Perera, R., Riley, C., Isaac, G., Hopf-Jannasch, A. S., Moore, R. J., Weitz, K. W., Pasa-Tolic, L., Metz, T. O., Adamec, J. & Kuhn, R. J., Mar 2012, In : PLoS pathogens. 8, 3, e1002584.

Research output: Contribution to journalArticle

166 Scopus citations

Dynamics of envelope evolution in clade C SHIV-infected pig-tailed macaques during disease progression analyzed by ultra-deep pyrosequencing

Tso, F. Y., Tully, D. C., Gonzalez, S., Quince, C., Ho, O., Polacino, P., Ruprecht, R. M., Hu, S. L. & Wood, C., Mar 12 2012, In : PloS one. 7, 3, e32827.

Research output: Contribution to journalArticle

3 Scopus citations

Ergodic Sets as Cell Phenotype of Budding Yeast Cell Cycle

Todd, R. G. & Helikar, T., Oct 1 2012, In : PloS one. 7, 10, e45780.

Research output: Contribution to journalArticle

14 Scopus citations

Erratum: Identification and characterization of small compound inhibitors of human FATP2 (Biochemical Pharmacology (2010) 79 (990-999))

Sandoval, A., Chokshi, A., Jesch, E. D., Black, P. N. & Dirusso, C. C., Aug 15 2012, In : Biochemical Pharmacology. 84, 4, p. 580 1 p.

Research output: Contribution to journalComment/debate

High-resolution imaging of selenium in kidneys: A localized selenium pool associated with glutathione peroxidase 3

Malinouski, M., Kehr, S., Finney, L., Vogt, S., Carlson, B. A., Seravalli, J., Jin, R., Handy, D. E., Park, T. J., Loscalzo, J., Hatfield, D. L. & Gladyshev, V. N., Feb 1 2012, In : Antioxidants and Redox Signaling. 16, 3, p. 185-192 8 p.

Research output: Contribution to journalArticle

34 Scopus citations

Human epididymis protein 4 (HE4) plays a key role in ovarian cancer cell adhesion and motility

Lu, R., Sun, X., Xiao, R., Zhou, L., Gao, X. & Guo, L., Mar 9 2012, In : Biochemical and Biophysical Research Communications. 419, 2, p. 274-280 7 p.

Research output: Contribution to journalArticle

59 Scopus citations

Human herpesvirus 8 seroprevalence, China

Zhang, T., Shao, X., Chen, Y., Zhang, T., Minhas, V., Wood, C. & He, N., Jan 2012, In : Emerging infectious diseases. 18, 1, p. 150-152 3 p.

Research output: Contribution to journalReview article

25 Scopus citations

Hyaluronan turnover and hypoxic brown adipocytic differentiation are co-localized with ossification in calcified human aortic valves

Stephens, E. H., Saltarrelli, J. G., Balaoing, L. R., Baggett, L. S., Nandi, I., Anderson, K. M., Morrisett, J. D., Reardon, M. J., Simpson, M. A., Weigel, P. H., Olmsted-Davis, E. A., Davis, A. R. & Grande-Allen, K. J., Nov 15 2012, In : Pathology Research and Practice. 208, 11, p. 642-650 9 p.

Research output: Contribution to journalArticle

9 Scopus citations

Immune and inflammatory pathways are involved in inherent bone marrow ossification basic research

Gurkan, U. A., Golden, R., Kishore, V., Riley, C. P., Adamec, J. & Akkus, O., Sep 2012, In : Clinical Orthopaedics and Related Research. 470, 9, p. 2528-2540 13 p.

Research output: Contribution to journalArticle

6 Scopus citations

Increased expression of GAPDH protein is not indicative of nitrosative stress or apoptosis in liver of starved rainbow trout (Oncorhynchus mykiss)

Baumgarner, B. L., Riley, C. P., Sepulveda, M. S., Brown, P. B., Meyer, J. L. & Adamec, J., Apr 2012, In : Fish Physiology and Biochemistry. 38, 2, p. 319-327 9 p.

Research output: Contribution to journalArticle

5 Scopus citations

Inductively coupled plasma-mass spectrometry as a tool for high-throughput analysis of plants

Seravalli, J., 2012, High-Throughput Phenotyping in Plants: Methods and Protocols. Humana Press Inc., p. 269-288 20 p. (Methods in Molecular Biology; vol. 918).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

Inductively coupled plasma-mass spectrometry as a tool for high-throughput analysis of plants

Seravalli, J., 2012, Methods in Molecular Biology. Vol. 918. p. 269-288 20 p. (Methods in Molecular Biology; vol. 918).

Research output: Chapter in Book/Report/Conference proceedingChapter

Influence of peptide dipoles and hydrogen bonds on reactive cysteine pKa values in fission yeast DJ-1

Madzelan, P., Labunska, T. & Wilson, M. A., Nov 2012, In : FEBS Journal. 279, 22, p. 4111-4120 10 p.

Research output: Contribution to journalArticle

17 Scopus citations

Intersymbol and co-channel interference in diffusion-based molecular communication

Pierobon, M. & Akyildiz, I. F., 2012, 2012 IEEE International Conference on Communications, ICC 2012. p. 6126-6131 6 p. 6364970. (IEEE International Conference on Communications).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

29 Scopus citations

Knocking out viral myoCarditis: Reality or a mirage?

Sun, X. & Feinberg, M. W., Aug 3 2012, In : Circulation Research. 111, 4, p. 388-391 4 p.

Research output: Contribution to journalEditorial

4 Scopus citations

Knockout of the 15 kDa Selenoprotein Protects against Chemically-Induced Aberrant Crypt Formation in Mice

Tsuji, P. A., Carlson, B. A., Naranjo-Suarez, S., Yoo, M. H., Xu, X. M., Fomenko, D. E., Gladyshev, V. N., Hatfield, D. L. & Davis, C. D., Dec 4 2012, In : PloS one. 7, 12, e50574.

Research output: Contribution to journalArticle

29 Scopus citations

Late-stage maturation of the Rieske Fe/S protein: Mzm1 stabilizes Rip1 but does not facilitate its translocation by the AAA ATPase Bcs1

Cui, T. Z., Smith, P. M., Fox, J. L., Khalimonchuk, O. & Winge, D. R., Nov 2012, In : Molecular and cellular biology. 32, 21, p. 4400-4409 10 p.

Research output: Contribution to journalArticle

36 Scopus citations

Loss of Dnmt3b function upregulates the tumor modifier Ment and accelerates mouse lymphomagenesis

Hlady, R. A., Novakova, S., Opavska, J., Klinkebiel, D., Peters, S. L., Bies, J., Hannah, J., Iqbal, J., Anderson, K. M., Siebler, H. M., Smith, L. M., Greiner, T. C., Bastola, D., Joshi, S., Lockridge, O., Simpson, M. A., Felsher, D. W., Wagner, K. U., Chan, W. C., Christman, J. K. & 1 others, Opavsky, R., Jan 3 2012, In : Journal of Clinical Investigation. 122, 1, p. 163-177 15 p.

Research output: Contribution to journalArticle

45 Scopus citations

Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169

Msanne, J., Xu, D., Konda, A. R., Casas-Mollano, J. A., Awada, T., Cahoon, E. B. & Cerutti, H., Mar 2012, In : Phytochemistry. 75, p. 50-59 10 p.

Research output: Contribution to journalArticle

251 Scopus citations

Metabolite profiles in starved diporeia spp. using liquid chromatography-mass spectrometry (Lc-Ms) based metabolomics

Maity, S., Jannasch, A., Adamec, J., Gribskov, M., Nalepa, T., Höök, T. O. & Sepúlveda, M. S., Mar 2012, In : Journal of Crustacean Biology. 32, 2, p. 239-248 10 p.

Research output: Contribution to journalArticle

15 Scopus citations

MicroRNA-181b regulates NF-κB-mediated vascular inflammation

Sun, X., Icli, B., Wara, A. K., Belkin, N., He, S., Kobzik, L., Hunninghake, G. M., Vera, M. P., Blackwell, T. S., Baron, R. M., Feinberg, M. W., Dolinay, T., Gazourian, L., Fredenburgh, L., Massaro, A. & Choi, A., Jun 1 2012, In : Journal of Clinical Investigation. 122, 6, p. 1973-1990 18 p.

Research output: Contribution to journalArticle

324 Scopus citations

Mushroom Ganoderma lucidum Prevents Colitis-Associated Carcinogenesis in Mice

Sliva, D., Loganathan, J., Jiang, J., Jedinak, A., Lamb, J. G., Terry, C., Baldridge, L. A., Adamec, J., Sandusky, G. E. & Dudhgaonkar, S., Oct 30 2012, In : PloS one. 7, 10, e47873.

Research output: Contribution to journalArticle

44 Scopus citations

NF-κB and hypoxia: A double-edged sword in atherosclerosis

Sun, X. & Feinberg, M. W., Nov 2012, In : American Journal of Pathology. 181, 5, p. 1513-1517 5 p.

Research output: Contribution to journalComment/debate

2 Scopus citations

Oligomerization of heme o synthase in cytochrome oxidase biogenesis is mediated by cytochrome oxidase assembly factor Coa2

Khalimonchuk, O., Kim, H., Watts, T., Perez-Martinez, X. & Winge, D. R., Aug 3 2012, In : Journal of Biological Chemistry. 287, 32, p. 26715-26726 12 p.

Research output: Contribution to journalArticle

17 Scopus citations

Probing structural selectivity of synthetic heparin binding to stabilin protein receptors

Pempe, E. H., Xu, Y., Gopalakrishnan, S., Liu, J. & Harris, E. N., Jun 15 2012, In : Journal of Biological Chemistry. 287, 25, p. 20774-20783 10 p.

Research output: Contribution to journalArticle

25 Scopus citations

Proline dehydrogenase is essential for proline protection against hydrogen peroxide-induced cell death

Natarajan, S. K., Zhu, W., Liang, X., Zhang, L., Demers, A. J., Zimmerman, M. C., Simpson, M. A. & Becker, D. F., Sep 1 2012, In : Free Radical Biology and Medicine. 53, 5, p. 1181-1191 11 p.

Research output: Contribution to journalArticle

61 Scopus citations

Proteomic analysis of 17β-estradiol degradation by Stenotrophomonas maltophilia

Li, Z., Nandakumar, R., Madayiputhiya, N. & Li, X., Jun 5 2012, In : Environmental Science and Technology. 46, 11, p. 5947-5955 9 p.

Research output: Contribution to journalArticle

43 Scopus citations

Proteomic analysis of bronchoalveolar lavage Fluid in an equine model of asthma during a natural antigen exposure trial marybeth

Feutz, M., Riley, C. P., Zhang, X., Adamec, J., Eompson, C. & Couetil, L. L., Dec 2012, In : Journal of Integrated OMICS. 2, 2, p. 123-131 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Pseudomonas syringae catalases are collectively required for plant pathogenesis

Guo, M., Block, A., Bryan, C. D., Becker, D. F. & Alfano, J. R., Sep 2012, In : Journal of bacteriology. 194, 18, p. 5054-5064 11 p.

Research output: Contribution to journalArticle

25 Scopus citations

Rapid reaction kinetics of proline dehydrogenase in the multifunctional proline utilization a protein

Moxley, M. A. & Becker, D. F., Jan 10 2012, In : Biochemistry. 51, 1, p. 511-520 10 p.

Research output: Contribution to journalArticle

21 Scopus citations
41 Scopus citations

Selective Oma1 protease-mediated proteolysis of Cox1 subunit of cytochrome oxidase in assembly mutants

Khalimonchuk, O., Jeong, M. Y., Watts, T., Ferris, E. & Winge, D. R., Mar 2 2012, In : Journal of Biological Chemistry. 287, 10, p. 7289-7300 12 p.

Research output: Contribution to journalArticle

38 Scopus citations

Selenoproteins in the endoplasmic reticulum

Fomenko, D. E., Jun 1 2012, Selenium: Its Molecular Biology and Role in Human Health. Springer New York, Vol. 9781461410256. p. 221-234 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
85 Scopus citations

Starvation causes disturbance in amino acid and fatty acid metabolism in Diporeia

Maity, S., Jannasch, A., Adamec, J., Nalepa, T., Höök, T. O. & Sepúlveda, M. S., Apr 2012, In : Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology. 161, 4, p. 348-355 8 p.

Research output: Contribution to journalArticle

16 Scopus citations

Structure, function, and assembly of heme centers in mitochondrial respiratory complexes

Kim, H. J., Khalimonchuk, O., Smith, P. M. & Winge, D. R., Sep 2012, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1823, 9, p. 1604-1616 13 p.

Research output: Contribution to journalReview article

92 Scopus citations

Substrate channeling in proline metabolism

Arentson, B. W., Sanyal, N. & Becker, D. F., Jan 1 2012, In : Frontiers in Bioscience. 17, 1, p. 375-388 14 p.

Research output: Contribution to journalReview article

33 Scopus citations