Research Output

2018

Lipid composition and emulsifying properties of Camelina sativa seed lecithin

Belayneh, H. D., Wehling, R. L., Cahoon, E. & Ciftci, O. N., Mar 1 2018, In : Food Chemistry. 242, p. 139-146 8 p.

Research output: Contribution to journalArticle

8 Scopus citations
12 Scopus citations
4 Scopus citations

Mechanism-based inhibition of human persulfide dioxygenase by γ-glutamyl-homocysteinyl-glycine

Kabil, O., Motl, N., Strack, M., Seravalli, J., Metzler-Nolte, N. & Banerjee, R., Aug 10 2018, In : Journal of Biological Chemistry. 293, 32, p. 12429-12439 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Metabolome analysis

Braga, C. P. & Adamec, J., Jan 1 2018, Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics. Elsevier, Vol. 1-3. p. 463-475 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Metallomics in Fish

Braga, C. P., Adamec, J. & de Magalhães Padilha, P., 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 101-110 10 p. (Advances in Experimental Medicine and Biology; vol. 1055).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Mitochondrial Reactive Oxygen Species in Lipotoxic Hearts Induce Post-Translational Modifications of AKAP121, DRP1, and OPA1 That Promote Mitochondrial Fission

Tsushima, K., Bugger, H., Wende, A. R., Soto, J., Jenson, G. A., Tor, A. R., McGlauflin, R., Kenny, H. C., Zhang, Y., Souvenir, R., Hu, X. X., Sloan, C. L., Pereira, R. O., Lira, V. A., Spitzer, K. W., Sharp, T. L., Shoghi, K. I., Sparagna, G. C., Rog-Zielinska, E. A., Kohl, P. & 3 others, Khalimonchuk, O., Schaffer, J. E. & Abel, E. D., Jan 5 2018, In : Circulation Research. 122, 1, p. 58-73 16 p.

Research output: Contribution to journalArticle

57 Scopus citations

Mouse genome-wide association studies and systems genetics uncover the genetic architecture associated with hepatic pharmacokinetic and pharmacodynamic properties of a constrained ethyl antisense oligonucleotide targeting Malat1

Pirie, E., Ray, S., Pan, C., Fu, W., Powers, A. F., Polikoff, D., Miller, C. M., Kudrna, K. M., Harris, E. N., Lusis, A. J., Crooke, R. M. & Lee, R. G., Oct 2018, In : PLoS genetics. 14, 10, e1007732.

Research output: Contribution to journalArticle

3 Scopus citations

Overexpression of SbMyb60 in Sorghum bicolor impacts both primary and secondary metabolism

Scully, E. D., Gries, T., Palmer, N. A., Sarath, G., Funnell-Harris, D. L., Baird, L., Twigg, P., Seravalli, J., Clemente, T. E. & Sattler, S. E., Jan 2018, In : New Phytologist. 217, 1, p. 82-104 23 p.

Research output: Contribution to journalArticle

14 Scopus citations

Overexpression of the sorghum bicolor SbCCoAOMT alters cell wall associated hydroxycinnamoyl groups

Tetreault, H. M., Scully, E. D., Gries, T., Palmer, N. A., Funnell-Harris, D. L., Baird, L., Seravalli, J., Dien, B. S., Sarath, G., Clemente, T. E. & Sattler, S. E., Oct 2018, In : PloS one. 13, 10, e0204153.

Research output: Contribution to journalArticle

4 Scopus citations

Parity-check coding based on genetic circuits for engineered molecular communication between biological cells

Marcone, A., Pierobon, M. & Magarini, M., Dec 2018, In : IEEE Transactions on Communications. 66, 12, p. 6221-6236 16 p., 8418677.

Research output: Contribution to journalArticle

14 Scopus citations

Preface

Wood, C. & Nath, A., 2018, In : Current HIV research. 16, 1, p. 2 1 p.

Research output: Contribution to journalEditorial

Open Access

Provitamin A biofortification of cassava enhances shelf life but reduces dry matter content of storage roots due to altered carbon partitioning into starch

Beyene, G., Solomon, F. R., Chauhan, R. D., Gaitán-Solis, E., Narayanan, N., Gehan, J., Siritunga, D., Stevens, R. L., Jifon, J., Van Eck, J., Linsler, E., Gehan, M., Ilyas, M., Fregene, M., Sayre, R. T., Anderson, P., Taylor, N. J. & Cahoon, E. B., Jun 2018, In : Plant Biotechnology Journal. 16, 6, p. 1186-1200 15 p.

Research output: Contribution to journalArticle

9 Scopus citations

Purification of hepatocytes and sinusoidal endothelial cells from mouse liver perfusion

Cabral, F., Miller, C. M., Kudrna, K. M., Hass, B. E., Daubendiek, J. G., Kellar, B. M. & Harris, E. N., Feb 12 2018, In : Journal of Visualized Experiments. 2018, 132, e56993.

Research output: Contribution to journalArticle

13 Scopus citations

Reactive oxygen species in chronic obstructive pulmonary disease

Boukhenouna, S., Wilson, M. A., Bahmed, K. & Kosmider, B., 2018, In : Oxidative medicine and cellular longevity. 2018, 5730395.

Research output: Contribution to journalReview article

48 Scopus citations

Receptor-Mediated Uptake of Phosphorothioate Antisense Oligonucleotides in Different Cell Types of the Liver

Miller, C. M., Tanowitz, M., Donner, A. J., Prakash, T. P., Swayze, E. E., Harris, E. N. & Seth, P. P., Jun 2018, In : Nucleic Acid Therapeutics. 28, 3, p. 119-127 9 p.

Research output: Contribution to journalArticle

20 Scopus citations

Redox Modulation of Oligomeric State in Proline Utilization A

Korasick, D. A., Campbell, A. C., Christgen, S. L., Chakravarthy, S., White, T. A., Becker, D. F. & Tanner, J. J., Jun 19 2018, In : Biophysical journal. 114, 12, p. 2833-2843 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

RNA-Seq of Kaposi’s sarcoma reveals alterations in glucose and lipid metabolism

Tso, F. Y., Kossenkov, A. V., Lidenge, S. J., Ngalamika, O., Ngowi, J. R., Mwaiselage, J., Wickramasinghe, J., Kwon, E. H., West, J. T., Lieberman, P. M. & Wood, C., Jan 2018, In : PLoS pathogens. 14, 1, e1006844.

Research output: Contribution to journalArticle

16 Scopus citations

Role of Selenof as a Gatekeeper of Secreted Disulfide-Rich Glycoproteins

Yim, S. H., Everley, R. A., Schildberg, F. A., Lee, S. G., Orsi, A., Barbati, Z. R., Karatepe, K., Fomenko, D. E., Tsuji, P. A., Luo, H. R., Gygi, S. P., Sitia, R., Sharpe, A. H., Hatfield, D. L. & Gladyshev, V. N., May 1 2018, In : Cell Reports. 23, 5, p. 1387-1398 12 p.

Research output: Contribution to journalArticle

15 Scopus citations

Seroprevalence of human herpesvirus 8 and its impact on the hemoglobin level in patients of end stage of renal diseases

Fang, Q., Wang, X., Liu, Z., Zhu, M., Ding, M., Minhas, V., Wood, C. & Zhang, T., Feb 1 2018, In : Journal of Medical Virology. 90, 2, p. 338-343 6 p.

Research output: Contribution to journalArticle

Simulated computational model lesson improves foundational systems thinking skills and conceptual knowledge in biology students

Bergan-Roller, H. E., Galt, N. J., Chizinski, C. J., Helikar, T. & Dauer, J. T., 2018, In : BioScience. 68, 8, p. 612-621 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Simulation of stimulation: Cytokine dosage and cell cycle crosstalk driving timing-dependent T cell differentiation

Barberis, M., Helikar, T. & Verbruggen, P., Aug 2 2018, In : Frontiers in Physiology. 9, AUG, 879.

Research output: Contribution to journalArticle

4 Scopus citations

Single-Molecule Unbinding Forces between the Polysaccharide Hyaluronan and Its Binding Proteins

Bano, F., Tammi, M. I., Kang, D. W., Harris, E. N. & Richter, R. P., Jun 19 2018, In : Biophysical journal. 114, 12, p. 2910-2922 13 p.

Research output: Contribution to journalArticle

9 Scopus citations

Special Issue on Mathematical Modeling, Implementations, Applications and Simulators for Molecular Communications

Noel, A., Yilmaz, H. B., Deng, Y., Pierobon, M., Nakano, T. & Nallanathan, A., Jun 2018, In : Nano Communication Networks. 16, p. 92-93 2 p.

Research output: Contribution to journalEditorial

Structural basis for the substrate inhibition of proline utilization A by proline

Korasick, D. A., Pemberton, T. A., Arentson, B. W., Becker, D. F. & Tanner, J. J., 2018, In : Molecules. 23, 1, 32.

Research output: Contribution to journalArticle

4 Scopus citations

Structural Determinants for the Interactions of Chemically Modified Nucleic Acids with the Stabilin-2 Clearance Receptor

Gaus, H., Miller, C. M., Seth, P. P. & Harris, E. N., Apr 10 2018, In : Biochemistry. 57, 14, p. 2061-2064 4 p.

Research output: Contribution to journalArticle

9 Scopus citations

The AAA ATPase Afg1 preserves mitochondrial fidelity and cellular health by maintaining mitochondrial matrix proteostasis

Germany, E. M., Zahayko, N., Huebsch, M. L., Fox, J. L., Prahlad, V. & Khalimonchuk, O., Nov 1 2018, In : Journal of cell science. 131, 22, jcs219956.

Research output: Contribution to journalArticle

3 Scopus citations

The CoLoMoTo interactive notebook: Accessible and reproducible computational analyses for qualitative biological networks

Naldi, A., Hernandez, C., Levy, N., Stoll, G., Monteiro, P. T., Chaouiya, C., Helikar, T., Zinovyev, A., Calzone, L., Cohen-Boulakia, S., Thieffry, D. & Paulevé, L., Jun 19 2018, In : Frontiers in Physiology. 9, JUN, 680.

Research output: Contribution to journalArticle

7 Scopus citations

The peroxidative cleavage of kaempferol contributes to the biosynthesis of the benzenoid moiety of ubiquinone in plants

Soubeyrand, E., Johnson, T. S., Latimer, S., Block, A., Kim, J., Colquhoun, T. A., Butelli, E., Martin, C., Wilson, M. A. & Basseta, G. J., Dec 2018, In : Plant Cell. 30, 12, p. 2910-2921 12 p.

Research output: Contribution to journalArticle

7 Scopus citations

The Proline Cycle As a Potential Cancer Therapy Target

Tanner, J. J., Fendt, S. M. & Becker, D. F., Jun 26 2018, In : Biochemistry. 57, 25, p. 3433-3444 12 p.

Research output: Contribution to journalArticle

22 Scopus citations

Therapeutic outcomes in AIDS-associated kaposi's sarcoma patients on antiretroviral therapy treated with chemotherapy at two tertiary hospitals in Lusaka, Zambia

Mtonga, W., Mujajati, A., Munkombwe, D., Kalungia, A., Muungo, L. T., West, J., Wood, C. & Ngalamika, O., 2018, In : Current HIV research. 16, 3, p. 231-236 6 p.

Research output: Contribution to journalArticle

4 Scopus citations

The world-wide incidence of Kaposi's sarcoma in the HIV/AIDS era

Liu, Z., Fang, Q., Zuo, J., Minhas, V., Wood, C. & Zhang, T., May 2018, In : HIV Medicine. 19, 5, p. 355-364 10 p.

Research output: Contribution to journalArticle

12 Scopus citations

Towards the synthetic design of camelina oil enriched in tailored acetyl-triacylglycerols with medium-chain fatty acids

Bansal, S., Kim, H. J., Na, G. N., Hamilton, M. E., Cahoon, E. B., Lu, C. & Durrett, T. P., 2018, In : Journal of experimental botany. 69, 18, p. 4395-4402 8 p.

Research output: Contribution to journalArticle

8 Scopus citations

Transcriptional Regulation of Vitamin E Biosynthesis during Germination of Dwarf Fan Palm Seeds

Siles, L., Alegre, L., González-Solís, A., Cahoon, E. B. & Munné-Bosch, S., Dec 1 2018, In : Plant & cell physiology. 59, 12, p. 2490-2501 12 p.

Research output: Contribution to journalArticle

4 Scopus citations
2017

A biological circuit design for modulated parity-check encoding in molecular communication

Marcone, A., Pierobon, M. & Magarini, M., Jul 28 2017, 2017 IEEE International Conference on Communications, ICC 2017. Debbah, M., Gesbert, D. & Mellouk, A. (eds.). Institute of Electrical and Electronics Engineers Inc., 7997032. (IEEE International Conference on Communications).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
6 Scopus citations

A frequency analysis on calcium T-type signaling in the nervous system

Khodaei, A., Vakilzadian, H. & Pierobon, M., Sep 27 2017, 2017 IEEE International Conference on Electro Information Technology, EIT 2017. IEEE Computer Society, p. 640-644 5 p. 8053442. (IEEE International Conference on Electro Information Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A microfluidic feed forward loop pulse generator for molecular communication

Deng, Y., Pierobon, M. & Nallanathan, A., Jul 1 2017, 2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1-7 7 p. (2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

A parity check analog decoder for molecular communication based on biological circuits

Marcone, A., Pierobon, M. & Magarini, M., Oct 2 2017, INFOCOM 2017 - IEEE Conference on Computer Communications. Institute of Electrical and Electronics Engineers Inc., 8057131. (Proceedings - IEEE INFOCOM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

A proteomic approach to identify metalloproteins and metal-binding proteins in liver from diabetic rats

Braga, C. P., Vieira, J. C. S., Grove, R. A., Boone, C. H. T., Leite, A. D. L., Buzalaf, M. A. R., Fernandes, A. A. H., Adamec, J. & Padilha, P. D. M., Mar 1 2017, In : International Journal of Biological Macromolecules. 96, p. 817-832 16 p.

Research output: Contribution to journalArticle

6 Scopus citations

A role for the ATP7A copper transporter in tumorigenesis and cisplatin resistance

Zhu, S., Shanbhag, V., Wang, Y., Lee, J. & Petris, M., 2017, In : Journal of Cancer. 8, 11, p. 1952-1958 7 p.

Research output: Contribution to journalArticle

18 Scopus citations

A simulation model of glucose-insulin metabolism and implementation on OSG

Rad, M. G., Immaneni, A., McCabe, M., Pierobon, M. & Cui, J., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1832-1839 8 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A specialized diacylglycerol acyltransferase contributes to the extreme medium-chain fatty acid content of Cuphea seed oil

Iskandarov, U., Silva, J. E., Kim, H. J., Andersson, M., Cahoon, R. E., Mockaitis, K. & Cahoon, E. B., May 2017, In : Plant physiology. 174, 1, p. 97-109 13 p.

Research output: Contribution to journalArticle

19 Scopus citations

Association of Household Food- and Drink-Sharing Practices with Human Herpesvirus 8 Seroconversion in a Cohort of Zambian Children

Crabtree, K. L., Wojcicki, J. M., Minhas, V., Kankasa, C., Mitchell, C. & Wood, C., 2017, In : Journal of Infectious Diseases. 216, 7, p. 842-849 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

BioSIMP: Using Software Testing Techniques for Sampling and Inference in Biological Organisms

Cashman, M., Catlett, J. L., Cohen, M. B., Buan, N. R., Sakkaff, Z., Pierobon, M. & Kelley, C. A., Jun 29 2017, Proceedings - 2017 IEEE/ACM 12th International Workshop on Software Engineering for Science, SE4Science 2017. Institute of Electrical and Electronics Engineers Inc., p. 2-8 7 p. 7964305. (Proceedings - 2017 IEEE/ACM 12th International Workshop on Software Engineering for Science, SE4Science 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
9 Scopus citations

Covalent conjugation of the equine infectious anemia virus Gag with SUMO

Wang, J., Wen, S., Zhao, R., Qi, J., Liu, Z., Li, W., An, J., Wood, C. & Wang, Y., May 6 2017, In : Biochemical and Biophysical Research Communications. 486, 3, p. 712-719 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Digital modulation and achievable information rates of thru-body haptic communications

Hanisch, N. & Pierobon, M., 2017, Disruptive Technologies in Sensors and Sensor Systems. Hall, R. D., Blowers, M. & Williams, J. (eds.). SPIE, 1020603. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 10206).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Discovery of the Membrane Binding Domain in Trifunctional Proline Utilization A

Christgen, S. L., Zhu, W., Sanyal, N., Bibi, B., Tanner, J. J. & Becker, D. F., Nov 28 2017, In : Biochemistry. 56, 47, p. 6292-6303 12 p.

Research output: Contribution to journalArticle

2 Scopus citations