Research Output

2017

Effect of Extraction Method on the Oxidative Stability of Camelina Seed Oil Studied by Differential Scanning Calorimetry

Belayneh, H. D., Wehling, R. L., Cahoon, E. B. & Ciftci, O. N., Mar 1 2017, In : Journal of food science. 82, 3, p. 632-637 6 p.

Research output: Contribution to journalArticle

4 Scopus citations

Emerging roles for microRNAs in diabetic microvascular disease: Novel targets for therapy

Zhang, Y., Sun, X., Icli, B. & Feinberg, M. W., 2017, In : Endocrine reviews. 38, 2, p. 145-168 24 p.

Research output: Contribution to journalReview article

65 Scopus citations

End-to-end molecular communication channels in cell metabolism: An information theoretic study

Sakkaf, Z., Catlett, J. L., Cashman, M., Pierobon, M., Buan, N. R., Cohen, M. B. & Kelley, C. A., Sep 27 2017, Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, NanoCom 2017. Association for Computing Machinery, Inc, 21. (Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, NanoCom 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Ethanol-Modified Supercritical Carbon Dioxide Extraction of the Bioactive Lipid Components of Camelina sativa Seed

Belayneh, H. D., Wehling, R. L., Reddy, A. K., Cahoon, E. B. & Ciftci, O. N., Jun 1 2017, In : JAOCS, Journal of the American Oil Chemists' Society. 94, 6, p. 855-865 11 p.

Research output: Contribution to journalArticle

14 Scopus citations

Evidence for Pipecolate Oxidase in Mediating Protection Against Hydrogen Peroxide Stress

Natarajan, S. K., Muthukrishnan, E., Khalimonchuk, O., Mott, J. L. & Becker, D. F., Jul 2017, In : Journal of Cellular Biochemistry. 118, 7, p. 1678-1688 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Gene duplication and neo-functionalization in the evolutionary and functional divergence of the metazoan Copper transporters Ctr1 and Ctr2

Logeman, B. L., Wood, L. K., Lee, J. & Thiele, D. J., Jul 7 2017, In : Journal of Biological Chemistry. 292, 27, p. 11531-11546 16 p.

Research output: Contribution to journalArticle

9 Scopus citations

Glucose Metabolism and AMPK Signaling Regulate Dopaminergic Cell Death Induced by Gene (α-Synuclein)-Environment (Paraquat) Interactions

Anandhan, A., Lei, S., Levytskyy, R., Pappa, A., Panayiotidis, M. I., Cerny, R. L., Khalimonchuk, O., Powers, R. & Franco, R., Jul 1 2017, In : Molecular Neurobiology. 54, 5, p. 3825-3842 18 p.

Research output: Contribution to journalArticle

16 Scopus citations

Glycosylation of inositol phosphorylceramide sphingolipids is required for normal growth and reproduction in Arabidopsis

Tartaglio, V., Rennie, E. A., Cahoon, R., Wang, G., Baidoo, E., Mortimer, J. C., Cahoon, E. B. & Scheller, H. V., Jan 1 2017, In : Plant Journal. 89, 2, p. 278-290 13 p.

Research output: Contribution to journalArticle

17 Scopus citations

High seroprevalence of human herpesvirus 8 and herpes simplex virus 2 infections in men who have sex with men in Shanghai, China

Liu, Z., Fang, Q., Zuo, J., Wang, J., Chen, Y., Minhas, V., Wood, C., He, N. & Zhang, T., May 1 2017, In : Journal of Medical Virology. 89, 5, p. 887-894 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

HIV drug resistance in infants increases with changing prevention of mother-to-child transmission regimens

Poppe, L. K., Chunda-Liyoka, C., Kwon, E. H., Gondwe, C., West, J. T., Kankasa, C., Ndongmo, C. B. & Wood, C., Aug 24 2017, In : AIDS. 31, 13, p. 1885-1889 5 p.

Research output: Contribution to journalArticle

7 Scopus citations

Hyaluronan synthase control of synthesis rate and hyaluronan product size are independent functions differentially affected by mutations in a conserved tandem B-X7-B motif

Baggenstoss, B. A., Harris, E. N., Washburn, J. L., Medina, A. P., Nguyen, L. & Weigel, P. H., 2017, In : Glycobiology. 27, 1, p. 154-164 11 p.

Research output: Contribution to journalArticle

19 Scopus citations

Identification and metabolite profiling of chemical activators of lipid accumulation in green algae

Wase, N., Tu, B., Allen, J. W., Black, P. N. & DiRusso, C. C., Aug 2 2017, In : Plant physiology. 174, 4, p. 2146-2165 20 p.

Research output: Contribution to journalArticle

15 Scopus citations

Identification of a Conserved Histidine As Being Critical for the Catalytic Mechanism and Functional Switching of the Multifunctional Proline Utilization A Protein

Moxley, M. A., Zhang, L., Christgen, S., Tanner, J. J. & Becker, D. F., Jun 20 2017, In : Biochemistry. 56, 24, p. 3078-3088 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Identification of potential tissue-specific cancer biomarkers and development of cancer versus normal genomic classifiers

Mohammed, A., Biegert, G., Adamec, J. & Helikar, T., Oct 17 2017, In : Oncotarget. 8, 49, p. 85692-85715 24 p.

Research output: Contribution to journalArticle

4 Scopus citations

Kaposi's Sarcoma-Associated Herpesvirus Infection of Neurons in HIV-Positive Patients

Tso, F. Y., Sawyer, A., Kwon, E. H., Mudenda, V., Langford, D., Zhou, Y., West, J. & Wood, C., Jun 15 2017, In : Journal of Infectious Diseases. 215, 12, p. 1898-1907 10 p.

Research output: Contribution to journalArticle

5 Scopus citations

Metalloproteases of the Inner Mitochondrial Membrane

Levytskyy, R. M., Bohovych, I. & Khalimonchuk, O., Sep 12 2017, In : Biochemistry. 56, 36, p. 4737-4746 10 p.

Research output: Contribution to journalArticle

16 Scopus citations

MicroRNA Regulation of HDL Homeostasis

Sun, X. & Feinberg, M. W., Feb 22 2017, The HDL Handbook: Biological Functions and Clinical Implications: Third Edition. Elsevier Inc., p. 209-229 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Organ-specific regulation of ATP7A abundance is coordinated with systemic copper homeostasis

Chun, H., Catterton, T., Kim, H., Lee, J. & Kim, B. E., Dec 1 2017, In : Scientific reports. 7, 1, 12001.

Research output: Contribution to journalArticle

6 Scopus citations

Oxidative stress, metabolomics profiling, and mechanism of local anesthetic induced cell death in yeast

Boone, C. H. T., Grove, R. A., Adamcova, D., Seravalli, J. & Adamec, J., Aug 1 2017, In : Redox Biology. 12, p. 139-149 11 p.

Research output: Contribution to journalArticle

24 Scopus citations
6 Scopus citations

Preface

Wood, C. & Nath, A., Jan 1 2017, In : Current HIV research. 15, 1, p. 2 1 p.

Research output: Contribution to journalEditorial

Prevalence of Kaposi’s sarcoma-associated herpesvirus in Uygur and Han populations from the Urumqi and Kashgar regions of Xinjiang, China

Zheng, J., Yang, Y., Cui, M., Shu, Z. J., Han, L. L., Liu, Z. Q., Wood, C., Zhang, T. & Zeng, Y., Oct 1 2017, In : Virologica Sinica. 32, 5, p. 396-403 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

Pseudomonas quinolone signal induces oxidative stress and inhibits heme oxygenase-1 expression in lung epithelial cells

Abdalla, M. Y., Hoke, T., Seravalli, J., Switzer, B. L., Bavitz, M., Fliege, J. D., Murphy, P. J. & Britigan, B. E., Sep 1 2017, In : Infection and immunity. 85, 9, e00176-17.

Research output: Contribution to journalArticle

9 Scopus citations

Quantification of cell signaling networks using kinase activity chemosensors

Beck, J. R., Harris, E. N. & Stains, C. I., 2017, Methods in Molecular Biology. Humana Press Inc., p. 61-70 10 p. (Methods in Molecular Biology; vol. 1636).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Resolving the cofactor-binding site in the proline biosynthetic enzyme human pyrroline-5-carboxylate reductase 1

Christensen, E. M., Patel, S. M., Korasick, D. A., Campbell, A. C., Krause, K. L., Becker, D. F. & Tanner, J. J., Apr 28 2017, In : Journal of Biological Chemistry. 292, 17, p. 7233-7243 11 p.

Research output: Contribution to journalArticle

15 Scopus citations

SECs (Sinusoidal Endothelial Cells), Liver Microenvironment, and Fibrosis

Natarajan, V., Harris, E. N. & Kidambi, S., 2017, In : BioMed research international. 2017, 4097205.

Research output: Contribution to journalReview article

19 Scopus citations

Selenoprotein MsrB1 promotes anti-inflammatory cytokine gene expression in macrophages and controls immune response in vivo /631/45/612 /631/250 /38 /82 /82/80 article

Lee, B. C., Lee, S. G., Choo, M. K., Kim, J. H., Lee, H. M., Kim, S., Fomenko, D. E., Kim, H. Y., Park, J. M. & Gladyshev, V. N., Dec 1 2017, In : Scientific reports. 7, 1, 5119.

Research output: Contribution to journalArticle

9 Scopus citations

Seroprevalence of antibodies against Kaposi's sarcoma-associated herpesvirus among HIV-negative people in China

Zhang, T., Liu, Z., Wang, J., Minhas, V., Wood, C., Clifford, G. M., He, N. & Franceschi, S., May 30 2017, In : Infectious Agents and Cancer. 12, 1, 32.

Research output: Contribution to journalArticle

2 Scopus citations

Seroprevalence of Kaposi's sarcoma-associated herpesvirus among HIV-infected Uygurs in Xinjiang, China

Liu, Z., Fang, Q., Zhou, S., Minhas, V., Wood, C., He, N. & Zhang, T., Sep 2017, In : Journal of Medical Virology. 89, 9, p. 1629-1635 7 p.

Research output: Contribution to journalArticle

6 Scopus citations

Short carboxylic acid-carboxylate hydrogen bonds can have fully localized protons

Lin, J., Pozharski, E. & Wilson, M. A., 2017, In : Biochemistry. 56, 2, p. 391-402 12 p.

Research output: Contribution to journalArticle

9 Scopus citations

Significant enhancement of fatty acid composition in seeds of the allohexaploid, Camelina sativa, using CRISPR/Cas9 gene editing

Jiang, W. Z., Henry, I. M., Lynagh, P. G., Comai, L., Cahoon, E. B. & Weeks, D. P., May 2017, In : Plant Biotechnology Journal. 15, 5, p. 648-657 10 p.

Research output: Contribution to journalArticle

89 Scopus citations

Structural and mechanistic insights into hemoglobincatalyzed hydrogen sulfide oxidation and the fate of polysulfide products

Vitvitsky, V., Yadav, P. K., An, S., Seravalli, J., Cho, U. S. & Banerjee, R., Mar 31 2017, In : Journal of Biological Chemistry. 292, 13, p. 5584-5592 9 p.

Research output: Contribution to journalArticle

24 Scopus citations

Structural biology of the DJ-1 superfamily

Smith, N. & Wilson, M. A., 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 5-24 20 p. (Advances in Experimental Medicine and Biology; vol. 1037).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Structural Insight into a Fatty-Acyl Chaperone for Wnt Proteins

Wilson, M. A., Dec 5 2017, In : Structure. 25, 12, p. 1781-1782 2 p.

Research output: Contribution to journalShort survey

3 Scopus citations

Structure, function, and mechanism of proline utilization A (PutA)

Liu, L. K., Becker, D. F. & Tanner, J. J., Oct 15 2017, In : Archives of Biochemistry and Biophysics. 632, p. 142-157 16 p.

Research output: Contribution to journalReview article

26 Scopus citations

Structure and characterization of a class 3B proline utilization A: Ligand-induced dimerization and importance of the C-terminal domain for catalysis

Korasick, D. A., Gamage, T. T., Christgen, S., Stiers, K. M., Beamer, L. J., Henzl, M. T., Becker, D. F. & Tanner, J. J., Jun 9 2017, In : Journal of Biological Chemistry. 292, 23, p. 9652-9665 14 p.

Research output: Contribution to journalArticle

14 Scopus citations

The assembly factor Pet117 couples heme a synthase activity to cytochrome oxidase assembly

Taylor, N. G., Swenson, S., Harris, N. J., Germany, E. M., Fox, J. L. & Khalimonchuk, O., Feb 3 2017, In : Journal of Biological Chemistry. 292, 5, p. 1815-1825 11 p.

Research output: Contribution to journalArticle

15 Scopus citations

The Gaussian approximation in soft detection for molecular communication via biological circuits

Marcone, A., Pierobon, M. & Magarini, M., Dec 19 2017, 18th IEEE International Workshop on Signal Processing Advances in Wireless Communications, SPAWC 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-6 6 p. 8227764. (IEEE Workshop on Signal Processing Advances in Wireless Communications, SPAWC; vol. 2017-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

The intestinal copper exporter CUA-1 is required for systemic copper homeostasis in Caenorhabditis elegans

Chun, H., Sharma, A. K., Lee, J., Chan, J., Jia, S. & Kim, B. E., Jan 6 2017, In : Journal of Biological Chemistry. 292, 1, p. 1-14 14 p.

Research output: Contribution to journalArticle

11 Scopus citations

The role of interactions of long non-coding RNAs and heterogeneous nuclear ribonucleoproteins in regulating cellular functions

Sun, X., Haider Ali, M. S. S. & Moran, M., Sep 1 2017, In : Biochemical Journal. 474, 17, p. 2925-2935 11 p.

Research output: Contribution to journalReview article

31 Scopus citations

Towards the development of a sustainable soya bean-based feedstock for aquaculture

Park, H., Weier, S., Razvi, F., Peña, P. A., Sims, N. A., Lowell, J., Hungate, C., Kissinger, K., Key, G., Fraser, P., Napier, J. A., Cahoon, E. B. & Clemente, T. E., Feb 1 2017, In : Plant Biotechnology Journal. 15, 2, p. 227-236 10 p.

Research output: Contribution to journalArticle

9 Scopus citations

Toxoplasma DJ-1 regulates organelle secretion by a direct interaction with calcium-dependent protein kinase 1

Child, M. A., Garland, M., Foe, I., Madzelan, P., Treeck, M., Van Der Linden, W. A., Bender, K. O., Weerapana, E., Wilson, M. A., Boothroyd, J. C., Reese, M. L. & Bogyo, M., Jan 1 2017, In : mBio. 8, 1, e02189-16.

Research output: Contribution to journalArticle

6 Scopus citations

Tryptophan 375 stabilizes the outer-domain core of gp120 for HIV vaccine immunogen design

Hu, D., Bowder, D., Wei, W., Thompson, J., Wilson, M. A. & Xiang, S. H., May 25 2017, In : Vaccine. 35, 23, p. 3067-3075 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Was Kaposi’s sarcoma-associated herpesvirus introduced into China via the ancient Silk Road? An evolutionary perspective

Liu, Z., Fang, Q., Zuo, J., Minhas, V., Wood, C., He, N. & Zhang, T., Oct 1 2017, In : Archives of Virology. 162, 10, p. 3061-3068 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Ydj1 governs fungal morphogenesis and stress response, and facilitates mitochondrial protein import via Mas1 and Mas2

Xie, J. L., Bohovych, I., Wong, E. O. Y., Lambert, J. P., Gingras, A. C., Khalimonchuk, O., Cowen, L. E. & Leach, M. D., Oct 2017, In : Microbial Cell. 4, 10, p. 342-361 20 p.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations
2016

Activation of ERK and NF-κB during HARE-mediated heparin uptake require only one of the four endocytic motifs

Pandey, M. S., Miller, C. M., Harris, E. N. & Weigel, P. H., Apr 2016, In : PloS one. 11, 4, e0154124.

Research output: Contribution to journalArticle

5 Scopus citations
9 Scopus citations

Analysis of oligomerization properties of heme a synthase provides insights into its function in eukaryotes

Swenson, S., Cannon, A., Harris, N. J., Taylor, N. G., Fox, J. L. & Khalimonchuk, O., May 6 2016, In : Journal of Biological Chemistry. 291, 19, p. 10411-10425 15 p.

Research output: Contribution to journalArticle

13 Scopus citations

An intra-body linear channel model based on neuronal subthreshold stimulation

Khodaei, A. & Pierobon, M., Jul 12 2016, 2016 IEEE International Conference on Communications, ICC 2016. Institute of Electrical and Electronics Engineers Inc., 7511483. (2016 IEEE International Conference on Communications, ICC 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Atomic resolution experimental phase information reveals extensive disorder and bound 2-methyl-2,4-pentanediol in Ca2+-calmodulin

Lin, J., van den Bedem, H., Brunger, A. T. & Wilson, M. A., 2016, In : Acta Crystallographica Section D: Structural Biology. 72, 1, p. 83-92 10 p.

Research output: Contribution to journalArticle

5 Scopus citations