Research Output

2016

Viruses, vaccines and the public

Diamond, J., McQuillan, J., Spiegel, A. N., Hill, P. W., Smith, R., West, J. & Wood, C., 2016, In : Museums and Social Issues. 11, 1, p. 9-16 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

Welcome from the program co-chairs

Chou, C. T., Jornet, J. M. & Pierobon, M., Sep 28 2016, In : Proceedings of the 3rd ACM International Conference on Nanoscale Computing and Communication, ACM NANOCOM 2016. a44.

Research output: Contribution to journalEditorial

2015

A biochemical filter for frequency-based signal reception in molecular communication

Laddomada, M. & Pierobon, M., 2015, 2015 IEEE Global Communications Conference, GLOBECOM 2015. Institute of Electrical and Electronics Engineers Inc., 7417148. (2015 IEEE Global Communications Conference, GLOBECOM 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Chemical Approach for the Detection of Protein Sulfinylation

Lo Conte, M., Lin, J., Wilson, M. A. & Carroll, K. S., Aug 21 2015, In : ACS chemical biology. 10, 8, p. 1825-1830 6 p.

Research output: Contribution to journalArticle

33 Scopus citations

A crosstalk-based linear filter in biochemical signal transduction pathways for the internet of bio-things

Laddomada, M. & Pierobon, M., Aug 4 2015, 2015 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 5520-5524 5 p. 7179027. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2015-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Activation and degradation of open reading frame 45 by the replication and transcription activator of Kaposi’s sarcoma-associated herpesvirus

Wang, Y., Yu, K., Pei, X., Zhang, T., Guo, Y., Wood, C. & Wang, J., Jul 1 2015, In : Journal of General Virology. 96, 7, p. 1883-1889 7 p.

Research output: Contribution to journalArticle

4 Scopus citations

Advances in Hyaluronan Biology: Signaling, Regulation, and Disease Mechanisms

Simpson, M. A., De La Motte, C., Sherman, L. S. & Weigel, P. H., 2015, In : International Journal of Cell Biology. 2015, 690572.

Research output: Contribution to journalEditorial

4 Scopus citations

A mass spectrometry-based method for the assay of ceramide synthase substrate specificity

Luttgeharm, K. D., Cahoon, E. B. & Markham, J. E., Jun 1 2015, In : Analytical Biochemistry. 478, p. 96-101 6 p.

Research output: Contribution to journalArticle

7 Scopus citations

A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation

Zhao, H., Ghirlando, R., Alfonso, C., Arisaka, F., Attali, I., Bain, D. L., Bakhtina, M. M., Becker, D. F., Bedwell, G. J., Bekdemir, A., Besong, T. M. D., Birck, C., Brautigam, C. A., Brennerman, W., Byron, O., Bzowska, A., Chaires, J. B., Chaton, C. T., Cölfen, H., Connaghan, K. D. & 100 others, Crowley, K. A., Curth, U., Daviter, T., Dean, W. L., Díez, A. I., Ebel, C., Eckert, D. M., Eisele, L. E., Eisenstein, E., England, P., Escalante, C., Fagan, J. A., Fairman, R., Finn, R. M., Fischle, W., García De La Torre, J., Gor, J., Gustafsson, H., Hall, D., Harding, S. E., Hernández Cifre, J. G., Herr, A. B., Howell, E. E., Isaac, R. S., Jao, S. C., Jose, D., Kim, S. J., Kokona, B., Kornblatt, J. A., Kosek, D., Krayukhina, E., Krzizike, D., Kusznir, E. A., Kwon, H., Larson, A., Laue, T. M., Roy, A. L., Leech, A. P., Lilie, H., Luger, K., Luque-Ortega, J. R., Ma, J., May, C. A., Maynard, E. L., Modrak-Wojcik, A., Mok, Y. F., Mücke, N., Nagel-Steger, L., Narlikar, G. J., Noda, M., Nourse, A., Obsil, T., Park, C. K., Park, J. K., Pawelek, P. D., Perdue, E. E., Perkins, S. J., Perugini, M. A., Peterson, C. L., Peverelli, M. G., Piszczek, G., Prag, G., Prevelige, P. E., Raynal, B. D. E., Rezabkova, L., Richter, K., Ringel, A. E., Rosenberg, R., Rowe, A. J., Rufer, A. C., Scott, D. J., Seravalli, J. G., Solovyova, A. S., Song, R., Staunton, D., Stoddard, C., Stott, K., Strauss, H. M., Streicher, W. W., Sumida, J. P., Swygert, S. G., Szczepanowski, R. H., Tessmer, I., Toth, R. T., Tripathy, A., Uchiyama, S., Uebel, S. F. W., Unzai, S., Gruber, A. V., Von Hippel, P. H., Wandrey, C., Wang, S. H., Weitzel, S. E., Wielgus-Kutrowska, B., Wolberger, C., Wolff, M., Wright, E., Wu, Y. S., Wubben, J. M. & Schuck, P., May 21 2015, In : PloS one. 10, 5, e0126420.

Research output: Contribution to journalArticle

45 Scopus citations

A sulfur-based transport pathway in Cu+-ATPases

Mattle, D., Zhang, L., Sitsel, O., Pedersen, L. T., Moncelli, M. R., Tadini-Buoninsegni, F., Gourdon, P., Rees, D. C., Nissen, P. & Meloni, G., Jun 1 2015, In : EMBO Reports. 16, 6, p. 728-740 13 p.

Research output: Contribution to journalArticle

21 Scopus citations

Aurora a kinase inhibition selectively synergizes with histone deacetylase inhibitor through cytokinesis failure in T-cell lymphoma

Zullo, K. M., Guo, Y., Cooke, L., Jirau-Serrano, X., Mangone, M., Scotto, L., Amengual, J. E., Mao, Y., Nandakumar, R., Cremers, S., Duong, J., Mahadevan, D. & O'Connor, O. A., Sep 15 2015, In : Clinical Cancer Research. 21, 18, p. 4097-4109 13 p.

Research output: Contribution to journalArticle

22 Scopus citations

Autonomous requirements of the Menkes disease protein in the nervous system

Hodgkinson, V. L., Zhu, S., Wang, Y., Ladomersky, E., Nickelson, K., Weisman, G. A., Lee, J., Gitlin, J. D. & Petris, M. J., 2015, In : American Journal of Physiology - Cell Physiology. 309, 10, p. 660-668 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Bio-Nano Communications Networks and Systems

Balasingham, I., Pierobon, M. & Akan, O. B., Dec 1 2015, In : Nano Communication Networks. 6, 4, p. 153-154 2 p.

Research output: Contribution to journalEditorial

2 Scopus citations

Characterization of an Fe≡N-NH2 Intermediate Relevant to Catalytic N2 Reduction to NH3

Anderson, J. S., Cutsail, G. E., Rittle, J., Connor, B. A., Gunderson, W. A., Zhang, L., Hoffman, B. M. & Peters, J. C., Jun 24 2015, In : Journal of the American Chemical Society. 137, 24, p. 7803-7809 7 p.

Research output: Contribution to journalArticle

86 Scopus citations

Chemical inhibition of fatty acid absorption and cellular uptake limits lipotoxic cell death

Ahowesso, C., Black, P. N., Saini, N., Montefusco, D., Chekal, J., Malosh, C., Lindsley, C. W., Stauffer, S. R. & DiRusso, C. C., Nov 1 2015, In : Biochemical Pharmacology. 98, 1, p. 167-181 15 p.

Research output: Contribution to journalArticle

15 Scopus citations

Chlorophyll synthase under epigenetic surveillance is critical for vitamin E synthesis, and altered expression affects tocopherol levels in arabidopsis

Zhang, C., Zhang, W., Ren, G., Li, D., Cahoon, R. E., Chen, M., Zhou, Y., Yu, B. & Cahoon, E. B., Aug 1 2015, In : Plant physiology. 168, 4, p. 1503-1511 9 p.

Research output: Contribution to journalArticle

14 Scopus citations

Combinatorial effects of fatty acid elongase enzymes on nervonic acid production in Camelina sativa

Huai, D., Zhang, Y., Zhang, C., Cahoon, E. B. & Zhou, Y., Jun 29 2015, In : PloS one. 10, 6, e0131755.

Research output: Contribution to journalArticle

18 Scopus citations

Connecting proline metabolism and signaling pathways in plant senescence

Zhang, L. & Becker, D. F., Jul 22 2015, In : Frontiers in Plant Science. 6, JULY, p. 1-8 8 p., 552.

Research output: Contribution to journalReview article

57 Scopus citations

Cooperative development of logical modelling standards and tools with CoLoMoTo

Naldi, A., Monteiro, P. T., Müssel, C., Kestler, H. A., Thieffry, D., Xenarios, I., Saez-Rodriguez, J., Helikar, T., Chaouiya, C., Albert, R., Barberis, M., Calzone, L., Chasapi, A., Cokelaer, T., Crespo, I., Dorier, J., Dräger, A., Hernandez, C., Hucka, M., De Jong, H. & 10 others, Keating, S. M., Klamt, S., Klarner, H., Laubenbacher, R., Le Novère, N., Niknejad, A., Rodriguez, N., Siebert, H., Stoll, G. & Zañudo., J. G. T., Apr 1 2015, In : Bioinformatics. 31, 7, p. 1154-1159 6 p.

Research output: Contribution to journalArticle

35 Scopus citations

CRF07-BC strain dominates the HIV-1 epidemic in injection drug users in liangshan prefecture of Sichuan, China

Li, L., Wei, D., Hsu, W. L., Li, T., Gui, T., Wood, C., Liu, Y., Li, H., Bao, Z., Liu, S., Wang, X. & Li, J., May 1 2015, In : AIDS Research and Human Retroviruses. 31, 5, p. 479-487 9 p.

Research output: Contribution to journalArticle

16 Scopus citations

Cytosolic Fe-S cluster protein maturation and iron regulation are independent of the mitochondrial Erv1/Mia40 Import System

Ozer, H. K., Dlouhy, A. C., Thornton, J. D., Hu, J., Liu, Y., Barycki, J. J., Balk, J. & Outten, C. E., Nov 13 2015, In : Journal of Biological Chemistry. 290, 46, p. 27829-27840 12 p.

Research output: Contribution to journalArticle

14 Scopus citations

Development and analysis of a highly flexible multi-gene expression system for metabolic engineering in Arabidopsis seeds and other plant tissues

Shockey, J., Mason, C., Gilbert, M., Cao, H., Li, X., Cahoon, E. & Dyer, J., Sep 24 2015, In : Plant Molecular Biology. 89, 1-2, p. 113-126 14 p.

Research output: Contribution to journalArticle

11 Scopus citations

Discovery of small molecule inhibitors to Krüppel-like factor 10 (klf10): Implications for modulation of t regulatory cell differentiation

Khedkar, S. A., Sun, X., Rigby, A. C. & Feinberg, M. W., Feb 12 2015, In : Journal of Medicinal Chemistry. 58, 3, p. 1446-1478 33 p.

Research output: Contribution to journalArticle

9 Scopus citations

Early Initiation of Antiretroviral Therapy Can Functionally Control Productive HIV-1 Infection in Humanized-BLT Mice

Li, Q., Tso, F. Y., Kang, G., Lu, W., Li, Y., Fan, W., Yuan, Z., Destache, C. J. & Wood, C., Aug 15 2015, In : Journal of Acquired Immune Deficiency Syndromes. 69, 5, p. 519-527 9 p.

Research output: Contribution to journalArticle

12 Scopus citations

Effect of pentoxifylline on chitinolytic enzyme activity in the eastern subterranean termite (Isoptera: Rhinotermitidae)

Husen, T. J., Kamble, S. T. & Stone, J. M., Oct 2015, In : Journal of Entomological Science. 50, 4, p. 295-310 16 p.

Research output: Contribution to journalArticle

1 Scopus citations

Effects of Antiretroviral Therapy on Kaposi's Sarcoma-Associated Herpesvirus (KSHV) Transmission among HIV-Infected Zambian Children

Olp, L. N., Minhas, V., Gondwe, C., Kankasa, C., Wojcicki, J., Mitchell, C., West, J. T. & Wood, C., Oct 2015, In : Journal of the National Cancer Institute. 107, 10, djv189.

Research output: Contribution to journalArticle

8 Scopus citations

Escherichia coli surface display of single-chain antibody VRC01 against HIV-1 infection

Wang, L. X., Mellon, M., Bowder, D., Quinn, M., Shea, D., Wood, C. & Xiang, S. H., Jan 5 2015, In : Virology. 475, p. 179-186 8 p.

Research output: Contribution to journalArticle

6 Scopus citations

Expression of iron homeostasis proteins in the spinal cord in experimental autoimmune encephalomyelitis and their implications for iron accumulation

Zarruk, J. G., Berard, J. L., Passos dos Santos, R., Kroner, A., Lee, J., Arosio, P. & David, S., Sep 1 2015, In : Neurobiology of Disease. 81, p. 93-107 15 p.

Research output: Contribution to journalArticle

29 Scopus citations

Extraction of omega-3-rich oil from Camelina sativa seed using supercritical carbon dioxide

Belayneh, H. D., Wehling, R. L., Cahoon, E. & Ciftci, O. N., Apr 16 2015, (Accepted/In press) In : Journal of Supercritical Fluids. 104

Research output: Contribution to journalArticle

30 Scopus citations
5 Scopus citations

Field production, purification and analysis of high-oleic acetyl-triacylglycerols from transgenic Camelina sativa

Liu, J., Tjellström, H., McGlew, K., Shaw, V., Rice, A., Simpson, J., Kosma, D., Ma, W., Yang, W., Strawsine, M., Cahoon, E., Durrett, T. P. & Ohlrogge, J., Mar 1 2015, In : Industrial Crops and Products. 65, p. 259-268 10 p.

Research output: Contribution to journalArticle

26 Scopus citations

First evidence for substrate channeling between proline catabolic enzymes: A validation of domain fusion analysis for predicting protein-protein interactions

Sanyal, N., Arentson, B. W., Luo, M., Tanner, J. J. & Becker, D. F., Jan 23 2015, In : Journal of Biological Chemistry. 290, 4, p. 2225-2234 10 p.

Research output: Contribution to journalArticle

23 Scopus citations

Glucosylceramides are critical for cell-type differentiation and organogenesis, but not for cell viability in Arabidopsis

Msanne, J., Chen, M., Luttgeharm, K. D., Bradley, A. M., Mays, E. S., Paper, J. M., Boyle, D. L., Cahoon, R. E., Schrick, K. & Cahoon, E. B., Oct 1 2015, In : Plant Journal. 84, 1, p. 188-201 14 p.

Research output: Contribution to journalArticle

20 Scopus citations
3 Scopus citations

Group-specific Internal Standard Technology (GSIST) for mass spectrometry-based metabolite profiling

Adamec, J., 2015, In : Issues in Toxicology. 2015-January, 21, p. 220-254 35 p.

Research output: Contribution to journalArticle

HARE-mediated endocytosis of hyaluronan and heparin is targeted by different subsets of three endocytic motifs

Pandey, M. S., Harris, E. N. & Weigel, P. H., 2015, In : International Journal of Cell Biology. 2015, 524707.

Research output: Contribution to journalArticle

7 Scopus citations

Hyaluronidase Hyal1 increases tumor cell proliferation and motility through accelerated vesicle trafficking

McAtee, C. O., Berkebile, A. R., Elowsky, C. G., Fangman, T., Barycki, J. J., Wahl, J. K., Khalimonchuk, O., Naslavsky, N., Caplan, S. & Simpson, M. A., May 22 2015, In : Journal of Biological Chemistry. 290, 21, p. 13144-13156 13 p.

Research output: Contribution to journalArticle

14 Scopus citations

Inductively coupled mass spectrometry analysis of biometals in conditional Hamp1 and Hamp1 and Hamp2 transgenic mouse models

Lu, S., Seravalli, J. & Harrison-Findik, D., Aug 25 2015, In : Transgenic Research. 24, 4, p. 765-773 9 p.

Research output: Contribution to journalArticle

4 Scopus citations

Integrating Interactive Computational Modeling in Biology Curricula

Helikar, T., Cutucache, C. E., Dahlquist, L. M., Herek, T. A., Larson, J. J. & Rogers, J. A., Mar 19 2015, In : PLoS computational biology. 11, 3, e1004131.

Research output: Contribution to journalArticle

10 Scopus citations

In vivo selection to identify bacterial strains with enhanced ecological performance in synbiotic applications

Krumbeck, J. A., Maldonado-Gomez, M. X., Martínez, I., Frese, S. A., Burkey, T. E., Rasineni, K., Ramer-Tait, A. E., Harris, E. N., Hutkins, R. W. & Walter, J., 2015, In : Applied and environmental microbiology. 81, 7, p. 2455-2465 11 p.

Research output: Contribution to journalArticle

27 Scopus citations

Kaposi's sarcoma at the University Teaching Hospital, Lusaka, Zambia in the antiretroviral therapy era

Ngalamika, O., Minhas, V. & Wood, C., Mar 1 2015, In : International Journal of Cancer. 136, 5, p. 1241-1242 2 p.

Research output: Contribution to journalLetter

9 Scopus citations

Metalloprotease OMA1 Fine-tunes Mitochondrial Bioenergetic Function and Respiratory Supercomplex Stability

Bohovych, I., Fernandez, M. R., Rahn, J. J., Stackley, K. D., Bestman, J. E., Anandhan, A., Franco, R., Claypool, S. M., Lewis, R. E., Chan, S. S. L. & Khalimonchuk, O., Sep 14 2015, In : Scientific reports. 5, 13989.

Research output: Contribution to journalArticle

25 Scopus citations

miRNAs in atherosclerotic plaque initiation, progression, and rupture

Andreou, I., Sun, X., Stone, P. H., Edelman, E. R. & Feinberg, M. W., May 1 2015, In : Trends in Molecular Medicine. 21, 5, p. 307-318 12 p.

Research output: Contribution to journalReview article

79 Scopus citations

Mitochondrial dysfunction and loss of glutamate uptake in primary astrocytes exposed to titanium dioxide nanoparticles

Wilson, C. L., Natarajan, V., Hayward, S. L., Khalimonchuk, O. & Kidambi, S., Nov 28 2015, In : Nanoscale. 7, 44, p. 18477-18488 12 p.

Research output: Contribution to journalArticle

36 Scopus citations

Mitochondrial Protein Quality Control: The Mechanisms Guarding Mitochondrial Health

Bohovych, I., Chan, S. S. L. & Khalimonchuk, O., Apr 20 2015, In : Antioxidants and Redox Signaling. 22, 12, p. 977-994 18 p.

Research output: Contribution to journalReview article

42 Scopus citations

Modifications of sphingolipid content affect tolerance to hemibiotrophic and necrotrophic pathogens by modulating plant defense responses in Arabidopsis

Magnin-Robert, M., Le Bourse, D., Markham, J., Dorey, S., Clément, C., Baillieul, F. & Dhondt-Cordelier, S., Nov 2015, In : Plant physiology. 169, 3, p. 2255-2274 20 p.

Research output: Contribution to journalArticle

20 Scopus citations

Morphology and Proteome Characterization of the Salivary Glands of the Western Chinch Bug (Hemiptera: Blissidae)

Ramm, C., Wayadande, A., Baird, L., Nandakumar, R., Madayiputhiya, N., Amundsen, K., Donze-Reiner, T., Baxendale, F., Sarath, G. & Heng-Moss, T., 2015, In : Journal of economic entomology. 108, 4, p. 2055-2064 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Multiplexing strategy for simultaneous detection of redox-, phospho- and total proteome-understanding TOR regulating pathways in Chlamydomonas reinhardtii

Rodrigues, S. P., Alvarez, S., Werth, E. G., Slade, W. O., Gau, B., Cahoon, E. B. & Hicks, L. M., Sep 7 2015, In : Analytical Methods. 7, 17, p. 7336-7344 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

Nitrogenase MoFe protein from Clostridium pasteurianum at 1.08Å resolution: Comparison with the Azotobacter vinelandii MoFe protein

Zhang, L. M., Morrison, C. N., Kaiser, J. T. & Rees, D. C., Feb 1 2015, In : Acta Crystallographica Section D: Biological Crystallography. 71, p. 274-282 9 p.

Research output: Contribution to journalArticle

20 Scopus citations

Observed and expected incidence of cervical cancer in Lusaka and the southern and western provinces of Zambia, 2007 to 2012

Kalima, M., Lishimpi, K., Meza, J. L., Watanabe-Galloway, S., Msadabwe, S. C., Mwaba, C. K., Shibemba, A. L., Banda, L., Wood, C., Chamberlain, R. M. & Soliman, A. S., Jan 1 2015, In : International Journal of Gynecological Cancer. 25, 1, p. 98-105 8 p.

Research output: Contribution to journalArticle

6 Scopus citations