Research Output

2015

Organization of the Mammalian Ionome According to Organ Origin, Lineage Specialization, and Longevity

Ma, S., Lee, S. G., Kim, E. B., Park, T. J., Seluanov, A., Gorbunova, V., Buffenstein, R., Seravalli, J. & Gladyshev, V. N., Nov 17 2015, In : Cell Reports. 13, 7, p. 1319-1326 8 p.

Research output: Contribution to journalArticle

25 Scopus citations

Overaccumulation of γ-glutamylcysteine in a jasmonate-hypersensitive arabidopsis mutant causes jasmonate-dependent growth inhibition

Wei, H. H., Rowe, M., Riethoven, J. J. M., Grove, R., Adamec, J., Jikumaru, Y. & Staswick, P., Sep 2015, In : Plant physiology. 169, 2, p. 1371-1381 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Overexpression of alpha-synuclein at non-toxic levels increases dopaminergic cell death induced by copper exposure via modulation of protein degradation pathways

Anandhan, A., Rodriguez-Rocha, H., Bohovych, I., Griggs, A. M., Zavala-Flores, L., Reyes-Reyes, E. M., Seravalli, J., Stanciu, L. A., Lee, J., Rochet, J. C., Khalimonchuk, O. & Franco, R., Sep 1 2015, In : Neurobiology of Disease. 81, p. 76-92 17 p.

Research output: Contribution to journalArticle

38 Scopus citations

Overexpression of Arabidopsis ceramide synthases differentially affects growth, sphingolipid metabolism, programmed cell death, and mycotoxin resistance

Luttgeharm, K. D., Chen, M., Mehra, A., Cahoon, R. E., Markham, J. E. & Cahoon, E. B., Sep 2015, In : Plant physiology. 169, 2, p. 1108-1117 10 p.

Research output: Contribution to journalArticle

26 Scopus citations

Pharmacokinetic modeling and biodistribution estimation through the molecular communication paradigm

Chahibi, Y., Pierobon, M. & Akyildiz, I. F., Oct 1 2015, In : IEEE Transactions on Biomedical Engineering. 62, 10, p. 2410-2420 11 p., 2430011.

Research output: Contribution to journalArticle

27 Scopus citations
9 Scopus citations

Production of high levels of poly-3-hydroxybutyrate in plastids of Camelina sativa seeds

Malik, M. R., Yang, W., Patterson, N., Tang, J., Wellinghoff, R. L., Preuss, M. L., Burkitt, C., Sharma, N., Ji, Y., Jez, J. M., Peoples, O. P., Jaworski, J. G., Cahoon, E. B. & Snell, K. D., Jun 1 2015, In : Plant Biotechnology Journal. 13, 5, p. 675-688 14 p.

Research output: Contribution to journalArticle

20 Scopus citations

Proline metabolism increases katG expression and oxidative stress resistance in Escherichia coli

Zhang, L., Alfano, J. R. & Becker, D. F., 2015, In : Journal of bacteriology. 197, 3, p. 431-440 10 p.

Research output: Contribution to journalArticle

38 Scopus citations

Proteomic adaptations to starvation prepare Escherichia coli for disinfection tolerance

Du, Z., Nandakumar, R., Nickerson, K. W. & Li, X., Feb 1 2015, In : Water Research. 69, p. 110-119 10 p.

Research output: Contribution to journalArticle

11 Scopus citations

Rapid metabolism of exogenous angiotensin ii by catecholaminergic neuronal cells in culture media

Basu, U., Seravalli, J., Madayiputhiya, N., Adamec, J., Case, A. J. & Zimmerman, M. C., 2015, In : Physiological Reports. 3, 2, e12287.

Research output: Contribution to journalArticle

2 Scopus citations

Redirection of metabolic flux for high levels of omega-7 monounsaturated fatty acid accumulation in camelina seeds

Nguyen, H. T., Park, H., Koster, K. L., Cahoon, R. E., Nguyen, H. T. M., Shanklin, J., Clemente, T. E. & Cahoon, E. B., Jan 1 2015, In : Plant Biotechnology Journal. 13, 1, p. 38-50 13 p.

Research output: Contribution to journalArticle

49 Scopus citations

Regulation of endothelial cell metabolism: Just go with the flow

Sun, X. & Feinberg, M. W., Jan 3 2015, In : Arteriosclerosis, Thrombosis, and Vascular Biology. 35, 1, p. 13-15 3 p.

Research output: Contribution to journalReview article

10 Scopus citations

Rerouting cellular electron flux to increase the rate of biological methane production

Catlett, J. L., Ortiz, A. M. & Buan, N. R., 2015, In : Applied and environmental microbiology. 81, 19, p. 6528-6537 10 p.

Research output: Contribution to journalArticle

8 Scopus citations

ROS-induced nanotherapeutic approach for ovarian cancer treatment based on the combinatorial effect of photodynamic therapy and DJ-1 gene suppression

Schumann, C., Taratula, O., Khalimonchuk, O., Palmer, A. L., Cronk, L. M., Jones, C. V., Escalante, C. A. & Taratula, O., Nov 1 2015, In : Nanomedicine: Nanotechnology, Biology, and Medicine. 11, 8, p. 1961-1970 10 p.

Research output: Contribution to journalArticle

26 Scopus citations

Secretoglobin and Transferrin Expression in Bronchoalveolar Lavage Fluid of Horses with Chronic Respiratory Disease

Miskovic Feutz, M., Couetil, L. L., Riley, C. P., Zhang, X., Adamec, J. & Raskin, R. E., Nov 1 2015, In : Journal of Veterinary Internal Medicine. 29, 6, p. 1692-1699 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

S-glutathionylation enhances human cystathionine β-synthase activity under oxidative stress conditions

Niu, W. N., Yadav, P. K., Adamec, J. & Banerjee, R., Feb 10 2015, In : Antioxidants and Redox Signaling. 22, 5, p. 350-361 12 p.

Research output: Contribution to journalReview article

52 Scopus citations

Sphingolipid metabolism is strikingly different between pollen and leaf in Arabidopsis as revealed by compositional and gene expression profiling

Luttgeharm, K. D., Kimberlin, A. N., Cahoon, R. E., Cerny, R. L., Napier, J. A., Markham, J. E. & Cahoon, E. B., Jul 2015, In : Phytochemistry. 115, 1, p. 121-129 9 p.

Research output: Contribution to journalArticle

19 Scopus citations

Structural insights into the mechanism defining substrate affinity in Arabidopsis thaliana dUTPase: The role of tryptophan 93 in ligand orientation

Inoguchi, N., Chaiseeda, K., Yamanishi, M., Kim, M. K., Jang, Y., Bajaj, M., Chia, C. P., Becker, D. F. & Moriyama, H., Dec 15 2015, In : BMC Research Notes. 8, 1, 784.

Research output: Contribution to journalArticle

4 Scopus citations

Structurally divergent lysophosphatidic acid acyltransferases with high selectivity for saturated medium chain fatty acids from Cuphea seeds

Kim, H. J., Silva, J. E., Iskandarov, U., Andersson, M., Cahoon, R. E., Mockaitis, K. & Cahoon, E. B., Dec 1 2015, In : Plant Journal. 84, 5, p. 1021-1033 13 p.

Research output: Contribution to journalArticle

17 Scopus citations

Substrate Pathways in the nitrogenase MoFe protein by experimental identification of small molecule binding sites

Morrison, C. N., Hoy, J. A., Zhang, L., Einsle, O. & Rees, D. C., Mar 24 2015, In : Biochemistry. 54, 11, p. 2052-2060 9 p.

Research output: Contribution to journalArticle

21 Scopus citations

The internet of Bio-Nano things

Akyildiz, I. F., Pierobon, M., Balasubramaniam, S. & Koucheryavy, Y., Mar 1 2015, In : IEEE Communications Magazine. 53, 3, p. 32-40 9 p., 7060516.

Research output: Contribution to journalArticle

238 Scopus citations

The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1

Chaouiya, C., Keating, S. M., Berenguier, D., Naldi, A., Thieffry, D., van Iersel, M. P., Le Novère, N. & Helikar, T., 2015, In : Journal of integrative bioinformatics. 12, 2, p. 270 1 p.

Research output: Contribution to journalArticle

8 Scopus citations
9 Scopus citations

Toward production of jet fuel functionality in oilseeds: Identification of FatB acyl-acyl carrier protein thioesterases and evaluation of combinatorial expression strategies in Camelina seeds

Kim, H. J., Silva, J. E., Vu, H. S., Mockaitis, K., Nam, J. W. & Cahoon, E. B., 2015, In : Journal of experimental botany. 66, 14, p. 4251-4265 15 p.

Research output: Contribution to journalReview article

40 Scopus citations

Transient sampling of aggregation-prone conformations causes pathogenic instability of a parkinsonian mutant of DJ-1 at physiological temperature

Milkovic, N. M., Catazaro, J., Lin, J., Halouska, S., Kizziah, J. L., Basiaga, S., Cerny, R. L., Powers, R. & Wilson, M. A., Oct 1 2015, In : Protein Science. 24, 10, p. 1671-1685 15 p.

Research output: Contribution to journalArticle

7 Scopus citations
31 Scopus citations

Welcome from the program co-chairs

Nakano, T., Balasingham, I., Jornet, J. M. & Pierobon, M., Sep 21 2015, In : Proceedings of the 2nd ACM International Conference on Nanoscale Computing and Communication, ACM NANOCOM 2015.

Research output: Contribution to journalEditorial

Whole-genome sequencing of Kaposi's sarcoma-associated herpesvirus from Zambian Kaposi's sarcoma biopsy specimens reveals unique viral diversity

Olp, L. N., Jeanniard, A., Marimo, C., West, J. T. & Wood, C., 2015, In : Journal of virology. 89, 24, p. 12299-12308 10 p.

Research output: Contribution to journalArticle

24 Scopus citations

X-linked spinal muscular atrophy in mice caused by autonomous loss of ATP7A in the motor neuron

Hodgkinson, V. L., Dale, J. M., Garcia, M. L., Weisman, G. A., Lee, J., Gitlin, J. D. & Petris, M. J., Jun 1 2015, In : Journal of Pathology. 236, 2, p. 241-250 10 p.

Research output: Contribution to journalArticle

19 Scopus citations
2014
44 Scopus citations

A high-throughput fatty acid profiling screen reveals novel variations in fatty acid biosynthesis in Chlamydomonas reinhardtii and related algae

Pflaster, E. L., Schwabe, M. J., Becker, J., Wilkinson, M. S., Parmer, A., Clemente, T. E., Cahoon, E. B. & Riekhof, W. R., Nov 1 2014, In : Eukaryotic Cell. 13, 11, p. 1431-1438 8 p.

Research output: Contribution to journalArticle

9 Scopus citations

Alterations in energy/redox metabolism induced by mitochondrial and environmental toxins: A specific role for glucose-6-phosphate-dehydrogenase and the pentose phosphate pathway in paraquat toxicity

Lei, S., Zavala-Flores, L., Garcia-Garcia, A., Nandakumar, R., Huang, Y., Madayiputhiya, N., Stanton, R. C., Dodds, E. D., Powers, R. & Franco, R., Sep 19 2014, In : ACS chemical biology. 9, 9, p. 2032-2048 17 p.

Research output: Contribution to journalArticle

42 Scopus citations

A molecular communication system model based on biological circuits

Pierobon, M., 2014, Proceedings of the 1st ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2014. Association for Computing Machinery, 2619958. (Proceedings of the 1st ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

11 Scopus citations

A multienzyme complex channels substrates and electrons through acetyl-coA and methane biosynthesis pathways in Methanosarcina

Lieber, D. J., Catlett, J., Madayiputhiya, N., Nandakumar, R., Lopez, M. M., Metcalf, W. W. & Buan, N. R., Sep 18 2014, In : PloS one. 9, 9, e107563.

Research output: Contribution to journalArticle

6 Scopus citations

Arabidopsis accelerated cell death 11, ACD11, Is a ceramide-1-phosphate transfer protein and intermediary regulator of phytoceramide levels

Simanshu, D. K., Zhai, X., Munch, D., Hofius, D., Markham, J. E., Bielawski, J., Bielawska, A., Malinina, L., Molotkovsky, J. G., Mundy, J. W., Patel, D. J. & Brown, R. E., 2014, In : Cell Reports. 6, 2, p. 388-399 12 p.

Research output: Contribution to journalArticle

41 Scopus citations

A routing framework for energy harvesting wireless nanosensor networks in the Terahertz Band

Pierobon, M., Jornet, J. M., Akkari, N., Almasri, S. & Akyildiz, I. F., Jul 2014, In : Wireless Networks. 20, 5, p. 1169-1183 15 p.

Research output: Contribution to journalArticle

59 Scopus citations

A statistical-physical model of interference in diffusion-based molecular nanonetworks

Pierobon, M. & Akyildiz, I. F., Jun 2014, In : IEEE Transactions on Communications. 62, 6, p. 2085-2095 11 p., 6782407.

Research output: Contribution to journalArticle

59 Scopus citations

A systems-theoretic model of a biological circuit for molecular communication in nanonetworks

Pierobon, M., Mar 2014, In : Nano Communication Networks. 5, 1-2, p. 25-34 10 p.

Research output: Contribution to journalArticle

21 Scopus citations

Camelina: An emerging oilseed platform for advanced biofuels and bio-based materials

Iskandarov, U., Kim, H. J. & Cahoon, E. B., Jan 1 2014, Plants and BioEnergy. Springer New York, p. 131-140 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

36 Scopus citations

Chlorophyll degradation: The tocopherol Biosynthesis-Related phytol hydrolase in arabidopsis seeds is still missing

Zhang, W., Liu, T., Ren, G., HɆrtensteiner, S., Zhou, Y., Cahoon, E. B. & Zhang, C., Sep 1 2014, In : Plant physiology. 166, 1, p. 70-79 10 p.

Research output: Contribution to journalArticle

41 Scopus citations

Chlorovirus PBCV-1 encodes an active copper-zinc superoxide dismutase

Kang, M., Duncan, G. A., Kuszynski, C., Oyler, G., Zheng, J., Becker, D. F. & van Etten, J. L., 2014, In : Journal of virology. 88, 21, p. 12541-12550 10 p.

Research output: Contribution to journalArticle

10 Scopus citations

Chlorovirus Skp1-binding ankyrin repeat protein interplay and mimicry of cellular ubiquitin ligase machinery

Noel, E. A., Kang, M., Adamec, J., Van Etten, J. L. & Oyler, G. A., 2014, In : Journal of virology. 88, 23, p. 13798-13810 13 p.

Research output: Contribution to journalArticle

6 Scopus citations

Crystal cryocooling distorts conformational heterogeneity in a model michaelis complex of DHFR

Keedy, D. A., Van Den Bedem, H., Sivak, D. A., Petsko, G. A., Ringe, D., Wilson, M. A. & Fraser, J. S., Jun 10 2014, In : Structure. 22, 6, p. 899-910 12 p.

Research output: Contribution to journalArticle

57 Scopus citations

Design, assessment, and in vivo evaluation of a computational model illustrating the role of CAV1 in CD4+ T-lymphocytes

Conroy, B. D., Herek, T. A., Shew, T. D., Latner, M., Larson, J. J., Allen, L., Davis, P. H., Helikar, T. & Cutucache, C. E., 2014, In : Frontiers in immunology. 5, DEC, 599.

Research output: Contribution to journalArticle

10 Scopus citations

Emerging regulatory paradigms in glutathione metabolism

Liu, Y., Hyde, A. S., Simpson, M. A. & Barycki, J. J., 2014, In : Advances in Cancer Research. 122, p. 69-101 33 p.

Research output: Contribution to journalArticle

63 Scopus citations

Emerging roles for hyaluronidase in cancer metastasis and therapy

McAtee, C. O., Barycki, J. J. & Simpson, M. A., 2014, In : Advances in Cancer Research. 123, p. 1-34 34 p.

Research output: Contribution to journalArticle

83 Scopus citations

Epidemiology and transmission of kaposi’s sarcoma-associated herpesvirus

Minhas, V. & Wood, C., Nov 4 2014, In : Viruses. 6, 11, p. 4178-4194 17 p.

Research output: Contribution to journalReview article

38 Scopus citations
22 Scopus citations

Evidence that the C-terminal domain of a type B PutA protein contributes to aldehyde dehydrogenase activity and substrate channeling

Luo, M., Christgen, S., Sanyal, N., Arentson, B. W., Becker, D. F. & Tanner, J. J., Sep 9 2014, In : Biochemistry. 53, 35, p. 5661-5673 13 p.

Research output: Contribution to journalArticle

13 Scopus citations

Genome-wide RNAi ionomics screen reveals new genes and regulation of human trace element metabolism

Malinouski, M., Hasan, N. M., Zhang, Y., Seravalli, J., Lin, J., Avanesov, A., Lutsenko, S. & Gladyshev, V. N., Feb 13 2014, In : Nature communications. 5, 3301.

Research output: Contribution to journalArticle

33 Scopus citations