Research Output

2014

High prevalence of early childhood infection by Kaposi's sarcoma-associated herpesvirus in a minority population in China

Cao, Y., Minhas, V., Tan, X., Huang, J., Wang, B., Zhu, M., Gao, Y., Zhao, T., Yang, L. & Wood, C., May 2014, In : Clinical Microbiology and Infection. 20, 5, p. 475-481 7 p.

Research output: Contribution to journalArticle

12 Scopus citations

Homogeneous low-molecular-weight heparins with reversible anticoagulant activity

Xu, Y., Cai, C., Chandarajoti, K., Hsieh, P. H., Li, L., Pham, T. Q., Sparkenbaugh, E. M., Sheng, J., Key, N. S., Pawlinski, R., Harris, E. N., Linhardt, R. J. & Liu, J., Apr 2014, In : Nature Chemical Biology. 10, 4, p. 248-250 3 p.

Research output: Contribution to journalArticle

115 Scopus citations

Humanized-BLT mouse model of Kaposi's sarcoma-associated herpesvirus infection

Wang, L. X., Kang, G., Kumar, P., Lu, W., Li, Y., Zhou, Y., Li, Q. & Wood, C., Feb 25 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 8, p. 3146-3151 6 p.

Research output: Contribution to journalArticle

54 Scopus citations

Hyaluronan signaling and turnover. Preface

Simpson, M. A. & Heldin, P., 2014, In : Advances in cancer research. 123, p. xv-xvi

Research output: Contribution to journalEditorial

3 Scopus citations

Identification of a sphingolipid α-glucuronosyltransferase that is essential for pollen function in Arabidopsis

Rennie, E. A., Ebert, B., Miles, G. P., Cahoon, R. E., Christiansen, K. M., Stonebloom, S., Khatab, H., Twell, D., Petzold, C. J., Adams, P. D., Dupree, P., Heazlewood, J. L., Cahoon, E. B. & Scheller, H. V., Aug 1 2014, In : Plant Cell. 26, 8, p. 3314-3325 12 p.

Research output: Contribution to journalArticle

36 Scopus citations

Inactivation and viral load quantitation of human immunodeficiency virus in blood collected into Cyto-Chex® BCT blood collection device

Kwon, E., Minhas, V., Phiri, T., Wood, C., Swindells, S., Hunsley, B. A. & Fernando, M. R., Feb 2014, In : Journal of Virological Methods. 196, p. 50-55 6 p.

Research output: Contribution to journalArticle

Influence of iron and aeration on Staphylococcus aureus growth, metabolism, and transcription

Ledala, N., Zhang, B., Seravalli, J., Powers, R. & Somerville, G. A., 2014, In : Journal of bacteriology. 196, 12, p. 2178-2189 12 p.

Research output: Contribution to journalArticle

34 Scopus citations

Integrated quantitative analysis of nitrogen stress response in Chlamydomonas reinhardtii using metabolite and protein profiling

Wase, N., Black, P. N., Stanley, B. A. & Dirusso, C. C., Mar 7 2014, In : Journal of proteome research. 13, 3, p. 1373-1396 24 p.

Research output: Contribution to journalArticle

92 Scopus citations

Iron chaperones PCBP1 and PCBP2 mediate the metallation of the dinuclear iron enzyme deoxyhypusine hydroxylase

Frey, A. G., Nandal, A., Park, J. H., Smith, P. M., Yabe, T., Ryu, M. S., Ghosh, M. C., Lee, J., Rouault, T. A., Park, M. H. & Philpott, C. C., Jun 3 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 22, p. 8031-8036 6 p.

Research output: Contribution to journalArticle

62 Scopus citations

Kaposi's sarcoma associated herpesvirus infection among female sex workers and general population women in Shanghai, China: A cross-sectional study

Zhang, T., Yang, Y., Yu, F., Zhao, Y., Lin, F., Minhas, V., Wood, C. & He, N., Feb 5 2014, In : BMC Infectious Diseases. 14, 1, 58.

Research output: Contribution to journalArticle

10 Scopus citations

Kinetic and structural characterization of tunnel-perturbing mutants in Bradyrhizobium japonicum proline utilization A

Arentson, B. W., Luo, M., Pemberton, T. A., Tanner, J. J. & Becker, D. F., Aug 12 2014, In : Biochemistry. 53, 31, p. 5150-5161 12 p.

Research output: Contribution to journalArticle

15 Scopus citations

Metabolic role for yeast DJ-1 superfamily proteins

Wilson, M. A., May 13 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 19, p. 6858-6859 2 p.

Research output: Contribution to journalComment/debate

13 Scopus citations

MicroRNA-management of lipoprotein homeostasis

Sun, X. & Feinberg, M. W., Jun 20 2014, In : Circulation Research. 115, 1, p. 2-6 5 p.

Research output: Contribution to journalEditorial

13 Scopus citations

Modeling of rhythmic behavior in neutral lipid production due to continuous supply of limited nitrogen: Mutual growth and lipid accumulation in microalgae

Tevatia, R., Allen, J., Blum, P., Demirel, Y. & Black, P., Oct 2014, In : Bioresource Technology. 170, p. 152-159 8 p.

Research output: Contribution to journalArticle

14 Scopus citations

Molecular phylogeny and evolutionary dynamics of influenza A nonstructural (NS) gene

Xu, J., Zhong, H. A., Madrahimov, A., Helikar, T. & Lu, G., Mar 2014, In : Infection, Genetics and Evolution. 22, p. 192-200 9 p.

Research output: Contribution to journalArticle

9 Scopus citations
1 Scopus citations

Oxidative stress, redox signaling, and autophagy: Cell death versus survival

Navarro-Yepes, J., Burns, M., Anandhan, A., Khalimonchuk, O., Del Razo, L. M., Quintanilla-Vega, B., Pappa, A., Panayiotidis, M. I. & Franco, R., Jul 1 2014, In : Antioxidants and Redox Signaling. 21, 1, p. 66-85 20 p.

Research output: Contribution to journalArticle

218 Scopus citations

Plant defence suppression is mediated by a fungal sirtuin during rice infection by Magnaporthe oryzae

Fernandez, J., Marroquin-Guzman, M., Nandakumar, R., Shijo, S., Cornwell, K. M., Li, G. & Wilson, R. A., Oct 1 2014, In : Molecular Microbiology. 94, 1, p. 70-88 19 p.

Research output: Contribution to journalArticle

29 Scopus citations

Preface

Simpson, M. A. & Heldin, P., 2014, In : Advances in cancer research. 123, p. xv-xvi

Research output: Contribution to journalEditorial

Preliminary joint X-ray and neutron protein crystallographic studies of ecDHFR complexed with folate and NADP+

Wan, Q., Kovalevsky, A. Y., Wilson, M. A., Bennett, B. C., Langan, P. & Dealwis, C., Jun 2014, In : Acta Crystallographica Section F:Structural Biology Communications. 70, 6, p. 814-818 5 p.

Research output: Contribution to journalArticle

6 Scopus citations

Proline biosynthesis is required for endoplasmic reticulum stress tolerance in Saccharomyces cerevisiae

Liang, X., Dickman, M. B. & Becker, D. F., Oct 3 2014, In : Journal of Biological Chemistry. 289, 40, p. 27794-27806 13 p.

Research output: Contribution to journalArticle

24 Scopus citations

Protein/protein interactions in the mammalian heme degradation pathway: Heme oxygenase-2, cytochrome P450 reductase, and biliverdin reductase

Spencer, A. L. M., Bagai, I., Becker, D. F., Zuiderweg, E. R. P. & Ragsdale, S. W., Oct 24 2014, In : Journal of Biological Chemistry. 289, 43, p. 29836-29858 23 p.

Research output: Contribution to journalArticle

23 Scopus citations
7 Scopus citations

Quantitative proteomic analysis of the Salmonella-lettuce interaction

Zhang, Y., Nandakumar, R., Bartelt-Hunt, S. L., Snow, D. D., Hodges, L. & Li, X., Nov 1 2014, In : Microbial Biotechnology. 7, 6, p. 630-637 8 p.

Research output: Contribution to journalArticle

10 Scopus citations

Risk factors for early childhood infection of human herpesvirus-8 in zambian children: The role of early childhood feeding practices

Crabtree, K. L., Wojcicki, J. M., Minhas, V., Smith, D. R., Kankasa, C., Mitchell, C. D. & Wood, C., Feb 2014, In : Cancer Epidemiology Biomarkers and Prevention. 23, 2, p. 300-308 9 p.

Research output: Contribution to journalArticle

13 Scopus citations

Role of miR-181 family in regulating vascular inflammation and immunity

Sun, X., Sit, A. & Feinberg, M. W., Apr 2014, In : Trends in Cardiovascular Medicine. 24, 3, p. 105-112 8 p.

Research output: Contribution to journalReview article

85 Scopus citations

Sensitivity analysis of biological Boolean networks using information fusion based on nonadditive set functions

Kochi, N., Helikar, T., Allen, L., Rogers, J. A., Wang, Z. & Matache, M. T., Sep 5 2014, In : BMC systems biology. 8, 1, 92.

Research output: Contribution to journalArticle

4 Scopus citations

Seroprevalence of human herpesvirus 8 and hepatitis C virus among drug users in Shanghai, China

Zhang, T., Liu, Y., Zhang, Y., Wang, J., Minhas, V., Wood, C. & He, N., Jun 23 2014, In : Viruses. 6, 6, p. 2519-2530 12 p.

Research output: Contribution to journalArticle

5 Scopus citations

Stress-triggered activation of the metalloprotease Oma1 involves its C-terminal region and is important for mitochondrial stress protection in yeast

Bohovych, I., Donaldson, G., Christianson, S., Zahayko, N. & Khalimonchuk, O., 2014, In : Journal of Biological Chemistry. 289, 19, p. 13259-13272 14 p.

Research output: Contribution to journalArticle

22 Scopus citations

Structural studies of yeast Δ1-pyrroline-5-carboxylate dehydrogenase (ALDH4A1): Active site flexibility and oligomeric state

Pemberton, T. A., Srivastava, D., Sanyal, N., Henzl, M. T., Becker, D. F. & Tanner, J. J., Mar 4 2014, In : Biochemistry. 53, 8, p. 1350-1359 10 p.

Research output: Contribution to journalArticle

19 Scopus citations
44 Scopus citations

Systemic delivery of MicroRNA-181b inhibits nuclear factor-κB activation, vascular inflammation, and atherosclerosis in apolipoprotein E-deficient mice

Sun, X., He, S., Wara, A. K. M., Icli, B., Shvartz, E., Tesmenitsky, Y., Belkin, N., Li, D., Blackwell, T. S., Sukhova, G. K., Croce, K. & Feinberg, M. W., Jan 3 2014, In : Circulation Research. 114, 1, p. 32-40 9 p.

Research output: Contribution to journalArticle

184 Scopus citations

The origin and biosynthesis of the benzenoid moiety of ubiquinone (Coenzyme Q) in Arabidopsis

Block, A., Widhalm, J. R., Fatihi, A., Cahoon, R. E., Wamboldt, Y., Elowsky, C., Mackenzie, S. A., Cahoon, E. B., Chapple, C., Dudareva, N. & Basset, G. J., May 2014, In : Plant Cell. 26, 5, p. 1938-1948 11 p.

Research output: Contribution to journalArticle

49 Scopus citations

Thiol peroxidase deficiency leads to increased mutational load and decreased fitness in saccharomyces cerevisiae

Kaya, A., Lobanov, A. V., Gerashchenko, M. V., Koren, A., Fomenko, D. E., Koc, A. & Gladyshev, V. N., Nov 1 2014, In : Genetics. 198, 3, p. 905-917 13 p.

Research output: Contribution to journalArticle

10 Scopus citations

Toward resolving the catalytic mechanism of dihydrofolate reductase using neutron and ultrahigh-resolution X-ray crystallography

Wan, Q., Bennett, B. C., Wilson, M. A., Kovalevsky, A., Langan, P., Howell, E. E. & Dealwis, C., Dec 23 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 51, p. 18225-18230 6 p.

Research output: Contribution to journalArticle

40 Scopus citations

Transmembrane type-2-like Cu2+ site in the P1B-3-type ATPase CopB: Implications for metal selectivity

Meloni, G., Zhang, L. & Rees, D. C., Jan 17 2014, In : ACS chemical biology. 9, 1, p. 116-121 6 p.

Research output: Contribution to journalArticle

6 Scopus citations
11 Scopus citations

Tumor suppressor functions of Dnmt3a and Dnmt3b in the prevention of malignant mouse lymphopoiesis

Peters, S. L., Hlady, R. A., Opavska, J., Klinkebiel, D., Pirruccello, S. J., Talmon, G. A., Sharp, J. G., Wu, L., Jaenisch, R., Simpson, M. A., Karpf, A. R. & Opavsky, R., May 2014, In : Leukemia. 28, 5, p. 1138-1142 5 p.

Research output: Contribution to journalLetter

28 Scopus citations

Understanding and manipulating plant lipid composition: Metabolic engineering leads the way

Napier, J. A., Haslam, R. P., Beaudoin, F. & Cahoon, E. B., Jun 2014, In : Current Opinion in Plant Biology. 19, p. 68-75 8 p.

Research output: Contribution to journalReview article

65 Scopus citations

Use of cysteine-reactive cross-linkers to probe conformational flexibility of human DJ-1 demonstrates that Glu18 mutations are dimers

Prahlad, J., Hauser, D. N., Milkovic, N. M., Cookson, M. R. & Wilson, M. A., Sep 1 2014, In : Journal of Neurochemistry. 130, 6, p. 839-853 15 p.

Research output: Contribution to journalArticle

10 Scopus citations

YCF1-mediated cadmium resistance in yeast is dependent on copper metabolism and antioxidant enzymes

Wei, W., Smith, N., Wu, X., Kim, H., Seravalli, J., Khalimonchuk, O. & Lee, J., Oct 1 2014, In : Antioxidants and Redox Signaling. 21, 10, p. 1475-1489 15 p.

Research output: Contribution to journalArticle

14 Scopus citations
2013

A cell simulator platform: The cell collective

Helikar, T., Kowal, B. & Rogers, J. A., May 2013, In : Clinical Pharmacology and Therapeutics. 93, 5, p. 393-395 3 p.

Research output: Contribution to journalArticle

15 Scopus citations

A Comprehensive, Multi-Scale Dynamical Model of ErbB Receptor Signal Transduction in Human Mammary Epithelial Cells

Helikar, T., Kochi, N., Kowal, B., Dimri, M., Naramura, M., Raja, S. M., Band, V., Band, H. & Rogers, J. A., Apr 18 2013, In : PloS one. 8, 4, e61757.

Research output: Contribution to journalArticle

27 Scopus citations

Activity of the Arabidopsis RD29A and RD29B promoter elements in soybean under water stress

Bihmidine, S., Lin, J., Stone, J. M., Awada, T., Specht, J. E. & Clemente, T. E., Jan 2013, In : Planta. 237, 1, p. 55-64 10 p.

Research output: Contribution to journalArticle

32 Scopus citations

A molecular communication system model for particulate drug delivery systems

Chahibi, Y., Pierobon, M., Song, S. O. & Akyildiz, I. F., Dec 2013, In : IEEE Transactions on Biomedical Engineering. 60, 12, p. 3468-3483 16 p., 6548006.

Research output: Contribution to journalArticle

99 Scopus citations

Analysis of primary resistance mutations to HIV-1 entry inhibitors in therapy naive subtype C HIV-1 infected mother-infant pairs from Zambia

Guo, H., Liu, C., Liu, B., Wood, C. & Kong, X., Sep 2013, In : Journal of Clinical Virology. 58, 1, p. 233-239 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

A polar copper-Boron One-Electron σ-bond

Moret, M. E., Zhang, L. & Peters, J. C., Mar 13 2013, In : Journal of the American Chemical Society. 135, 10, p. 3792-3795 4 p.

Research output: Contribution to journalArticle

58 Scopus citations

Arabidopsis 3-ketoacyl-coenzyme a synthase9 is involved in the synthesis of tetracosanoic acids as precursors of cuticular waxes, suberins, sphingolipids, and phospholipids

Kim, J., Jung, J. H., Lee, S. B., Go, Y. S., Kim, H. J., Cahoon, R., Markham, J. E., Cahoon, E. B. & Suh, M. C., Jun 2013, In : Plant physiology. 162, 2, p. 567-580 14 p.

Research output: Contribution to journalArticle

67 Scopus citations

Arabidopsis 56-amino acid serine palmitoyltransferase- interacting proteins stimulate sphingolipid synthesis, are essential, and affect mycotoxin sensitivity

Kimberlin, A. N., Majumder, S., Han, G., Chen, M., Cahoon, R. E., Stone, J. M., Dunn, T. M. & Cahoona, E. B., Nov 2013, In : Plant Cell. 25, 11, p. 4627-4639 13 p.

Research output: Contribution to journalArticle

27 Scopus citations

A small-scale, inexpensive method for detecting formaldehyde or methanol in biochemical reactions containing interfering substances

Jiang, W. Z., Adamec, J. & Weeks, D. P., 2013, In : Analytical Biochemistry. 442, 2, p. 146-148 3 p.

Research output: Contribution to journalArticle

2 Scopus citations