Research Output

2013

AtABCA9 transporter supplies fatty acids for lipid synthesis to the endoplasmic reticulum

Kim, S., Yamaoka, Y., Ono, H., Kim, H., Shim, D., Maeshima, M., Martinoia, E., Cahoon, E. B., Nishid, I. & Lee, Y., Jan 8 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 2, p. 773-778 6 p.

Research output: Contribution to journalArticle

67 Scopus citations

A thraustochytrid diacylglycerol acyltransferase 2 with broad substrate specificity strongly increases oleic acid content in engineered Arabidopsis thaliana seeds

Zhang, C., Iskandarov, U., Klotz, E. T., Stevens, R. L., Cahoon, R. E., Nazarenus, T. J., Pereira, S. L. & Cahoon, E. B., Aug 2013, In : Journal of experimental botany. 64, 11, p. 3189-3200 12 p.

Research output: Contribution to journalArticle

28 Scopus citations

A Twin-Cysteine Motif in the V2 Region of gp120 Is Associated with SIV Envelope Trimer Stabilization

Bohl, C., Bowder, D., Thompson, J., Abrahamyan, L., Gonzalez-Ramirez, S., Mao, Y., Sodroski, J., Wood, C. & Xiang, S. H., Jul 23 2013, In : PloS one. 8, 7, e69406.

Research output: Contribution to journalArticle

15 Scopus citations

Bone marrow-derived kruppel-like factor 10 controls reendothelialization in response to arterial injury

Wara, A. K., Manica, A., Marchini, J. F., Sun, X., Icli, B., Tesmenitsky, Y., Croce, K. & Feinberg, M. W., Jul 2013, In : Arteriosclerosis, Thrombosis, and Vascular Biology. 33, 7, p. 1552-1560 9 p.

Research output: Contribution to journalArticle

13 Scopus citations

Camelina seed transcriptome: A tool for meal and oil improvement and translational research

Nguyen, H. T., Silva, J. E., Podicheti, R., Macrander, J., Yang, W., Nazarenus, T. J., Nam, J. W., Jaworski, J. G., Lu, C., Scheffler, B. E., Mockaitis, K. & Cahoon, E. B., Aug 2013, In : Plant Biotechnology Journal. 11, 6, p. 759-769 11 p.

Research output: Contribution to journalArticle

104 Scopus citations

Capacity of a diffusion-based molecular communication system with channel memory and molecular noise

Pierobon, M. & Akyildiz, I. F., 2013, In : IEEE Transactions on Information Theory. 59, 2, p. 942-954 13 p., 6305481.

Research output: Contribution to journalArticle

180 Scopus citations

Characterization of IRDye 800CW chlorotoxin as a targeting agent for brain tumors

Kovar, J. L., Curtis, E., Othman, S. F., Simpson, M. A. & Olive, D. M., 2013, In : Analytical Biochemistry. 440, 2, p. 212-219 8 p.

Research output: Contribution to journalArticle

24 Scopus citations

Clade C HIV-1 isolates circulating in Southern Africa exhibit a greater frequency of dicysteine motif-containing Tat variants than those in Southeast Asia and cause increased neurovirulence

Rao, V. R., Neogi, U., Talboom, J. S., Padilla, L., Rahman, M., Fritz-French, C., Gonzalez-Ramirez, S., Verma, A., Wood, C., Ruprecht, R. M., Ranga, U., Azim, T., Joska, J., Eugenin, E., Shet, A., Bimonte-Nelson, H., Tyor, W. R. & Prasad, V. R., Jun 8 2013, In : Retrovirology. 10, 1, 61.

Research output: Contribution to journalArticle

35 Scopus citations

Copper-zinc superoxide dismutase-deficient mice show increased susceptibility to experimental autoimmune encephalomyelitis induced with myelin oligodendrocyte glycoprotein 35-55

Massilamany, C., Gangaplara, A., Kim, H., Stanford, C., Rathnaiah, G., Steffen, D., Lee, J. & Reddy, J., Mar 15 2013, In : Journal of Neuroimmunology. 256, 1-2, p. 19-27 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Cytochrome b5 reductase encoded by CBR1 is essential for a functional male gametophyte in arabidopsis

Wayne, L. L., Wallis, J. G., Kumar, R., Markham, J. E. & Browse, J., Aug 2013, In : Plant Cell. 25, 8, p. 3052-3066 15 p.

Research output: Contribution to journalArticle

13 Scopus citations

Deletion of iron regulatory protein 1 causes polycythemia and pulmonary hypertension in mice through translational derepression of HIF2α

Ghosh, M. C., Zhang, D. L., Jeong, S. Y., Kovtunovych, G., Ollivierre-Wilson, H., Noguchi, A., Tu, T., Senecal, T., Robinson, G., Crooks, D. R., Tong, W. H., Ramaswamy, K., Singh, A., Graham, B. B., Tuder, R. M., Yu, Z. X., Eckhaus, M., Lee, J., Springer, D. A. & Rouault, T. A., Feb 5 2013, In : Cell Metabolism. 17, 2, p. 271-281 11 p.

Research output: Contribution to journalArticle

105 Scopus citations

Detection and quantification of plant sphingolipids by LC-MS

Markham, J. E., 2013, Plant Lipid Signaling Protocols. p. 93-101 9 p. (Methods in Molecular Biology; vol. 1009).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Detection techniques for diffusion-based molecular communication

Llatser, I., Cabellos-Aparicio, A., Pierobon, M. & Alarcon, E., Dec 1 2013, In : IEEE Journal on Selected Areas in Communications. 31, 12, p. 726-734 9 p., 6708553.

Research output: Contribution to journalArticle

100 Scopus citations

Disruption of plastid acyl:acyl carrier protein synthetases increases medium chain fatty acid accumulation in seeds of transgenic Arabidopsis

Tjellström, H., Strawsine, M., Silva, J., Cahoon, E. B. & Ohlrogge, J. B., Apr 2 2013, In : FEBS Letters. 587, 7, p. 936-942 7 p.

Research output: Contribution to journalArticle

27 Scopus citations

Diversity of Plant Methionine Sulfoxide Reductases B and Evolution of a Form Specific for Free Methionine Sulfoxide

Le, D. T., Tarrago, L., Watanabe, Y., Kaya, A., Lee, B. C., Tran, U., Nishiyama, R., Fomenko, D. E., Gladyshev, V. N. & Tran, L. S. P., Jun 12 2013, In : PloS one. 8, 6, e65637.

Research output: Contribution to journalArticle

20 Scopus citations

Dynamics of Influenza Virus and Human Host Interactions During Infection and Replication Cycle

Madrahimov, A., Helikar, T., Kowal, B., Lu, G. & Rogers, J., Jun 2013, In : Bulletin of Mathematical Biology. 75, 6, p. 988-1011 24 p.

Research output: Contribution to journalArticle

15 Scopus citations

Early childhood infection of Kaposi's sarcoma-associated herpesvirus in Zambian households: A molecular analysis

Olp, L. N., Shea, D. M., White, M. K., Gondwe, C., Kankasa, C. & Wood, C., Mar 1 2013, In : International Journal of Cancer. 132, 5, p. 1182-1190 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

Effect of salts on the Co-fermentation of glucose and xylose by a genetically engineered strain of Saccharomyces cerevisiae

Casey, E., Mosier, N. S., Adamec, J., Stockdale, Z., Ho, N. & Sedlak, M., 2013, In : Biotechnology for Biofuels. 6, 1, 83.

Research output: Contribution to journalArticle

52 Scopus citations

Elucidating causes of Diporeia decline in the great lakes via metabolomics: Physiological responses after exposure to different stressors

Maity, S., Jannasch, A., Adamec, J., Watkins, J. M., Nalepa, T., Höök, T. O. & Sepúlveda, M. S., Feb 2013, In : Physiological and Biochemical Zoology. 86, 2, p. 213-223 11 p.

Research output: Contribution to journalArticle

5 Scopus citations

Endothelial MicroRNAs and atherosclerosis

Sun, X., Belkin, N. & Feinberg, M. W., Dec 2013, In : Current atherosclerosis reports. 15, 12, 372.

Research output: Contribution to journalArticle

76 Scopus citations

Essential role for dnmt1 in the prevention and maintenance of MYC-Induced T-Cell lmphomas

Peters, S. L., Hlady, R. A., Opavska, J., Klinkebiel, D., Novakova, S., Smith, L. M., Lewis, R. E., Karpf, A. R., Simpson, M. A., Wu, L. & Opavsky, R., 2013, In : Molecular and cellular biology. 33, 21, p. 4321-4333 13 p.

Research output: Contribution to journalArticle

35 Scopus citations

Functional convergence of structurally distinct thioesterases from cyanobacteria and plants involved in phylloquinone biosynthesis

Furt, F., Allen, W. J., Widhalm, J. R., Madzelan, P., Rizzo, R. C., Basset, G. & Wilson, M. A., Oct 2013, In : Acta Crystallographica Section D: Biological Crystallography. 69, 10, p. 1876-1888 13 p.

Research output: Contribution to journalArticle

5 Scopus citations

Fundamentals of diffusion-based molecular communication in nanonetworks

Pierobon, M. & Akyildiz, I. F., 2013, In : Foundations and Trends in Networking. 8, 1-2, p. 1-147 147 p.

Research output: Contribution to journalArticle

10 Scopus citations

Genetic and biochemical basis for alternative routes of tocotrienol biosynthesis for enhanced vitamin e antioxidant production

Zhang, C., Cahoon, R. E., Hunter, S. C., Chen, M., Han, J. & Cahoon, E. B., Feb 2013, In : Plant Journal. 73, 4, p. 628-639 12 p.

Research output: Contribution to journalArticle

35 Scopus citations

Global NeuroAIDS roundtable

Joseph, J., Achim, C. L., Boivin, M. J., Brew, B. J., Clifford, D. B., Colosi, D. A., Ellis, R. J., Heaton, R. K., Gallo-Diop, A., Grant, I., Kanmogne, G. D., Kumar, M., Letendre, S., Marcotte, T. D., Nath, A., Pardo, C. A., Paul, R. H., Pulliam, L., Robertson, K., Royal, W. & 6 others, Sacktor, N., Sithinamsuwan, P., Smith, D. M., Valcour, V., Wigdahl, B. & Wood, C., 2013, In : Journal of neurovirology. 19, 1, p. 1-9 9 p.

Research output: Contribution to journalReview article

17 Scopus citations

Higher Levels of Neutralizing Antibodies against KSHV in KS Patients Compared to Asymptomatic Individuals from Zambia

Kumar, P., Kuwa, N. Y., Minhas, V., Marimo, C., Shea, D. M., Kankasa, C. & Wood, C., Aug 14 2013, In : PloS one. 8, 8, e71254.

Research output: Contribution to journalArticle

11 Scopus citations

Histone biotinylation in Candida albicans

Hasim, S., Tati, S., Madayiputhiya, N., Nandakumar, R. & Nickerson, K. W., Sep 2013, In : FEMS Yeast Research. 13, 6, p. 529-539 11 p.

Research output: Contribution to journalArticle

7 Scopus citations

HIV-1 Env C2-V4 Diversification in a Slow-Progressor Infant Reveals a Flat but Rugged Fitness Landscape

Smith, S. A., Wood, C. & West, J. T., Apr 29 2013, In : PloS one. 8, 4, e63094.

Research output: Contribution to journalArticle

1 Scopus citations

Human Ubc9 Is Involved in Intracellular HIV-1 Env Stability after Trafficking out of the Trans-Golgi Network in a Gag Dependent Manner

Bohl, C. R., Abrahamyan, L. G. & Wood, C., Jul 8 2013, In : PloS one. 8, 7, e69359.

Research output: Contribution to journalArticle

3 Scopus citations

Identification of a cytochrome b5-fusion desaturase responsible for the synthesis of triunsaturated sphingolipid long chain bases in the marine diatom Thalassiosira pseudonana

Michaelson, L. V., Markham, J. E., Zäeuner, S., Matsumoto, M., Chen, M., Cahoon, E. B. & Napier, J. A., Jun 2013, In : Phytochemistry. 90, p. 50-55 6 p.

Research output: Contribution to journalArticle

8 Scopus citations

Imaging heterogeneity of membrane and storage lipids in transgenic Camelina sativa seeds with altered fatty acid profiles

Horn, P. J., Silva, J. E., Anderson, D., Fuchs, J., Borisjuk, L., Nazarenus, T. J., Shulaev, V., Cahoon, E. B. & Chapman, K. D., Oct 2013, In : Plant Journal. 76, 1, p. 138-150 13 p.

Research output: Contribution to journalArticle

58 Scopus citations

Involvement of the β3-α3 loop of the proline dehydrogenase domain in allosteric regulation of membrane association of proline utilization A

Zhu, W., Haile, A. M., Singh, R. K., Larson, J. D., Smithen, D., Chan, J. Y., Tanner, J. J. & Becker, D. F., Jul 2 2013, In : Biochemistry. 52, 26, p. 4482-4491 10 p.

Research output: Contribution to journalArticle

14 Scopus citations
6 Scopus citations

Low-abundance resistant mutations in HIV-1 subtype c antiretroviral therapy-naïve individuals as revealed by pyrosequencing

Gonzalez, S., Tully, D. C., Gondwe, C. & Wood, C., 2013, In : Current HIV research. 11, 1, p. 43-49 7 p.

Research output: Contribution to journalArticle

8 Scopus citations

MicroRNA-26a regulates pathological and physiological angiogenesis by targeting BMP/SMAD1 signaling

Icli, B., Wara, A. K. M., Moslehi, J., Sun, X., Plovie, E., Cahill, M., Marchini, J. F., Schissler, A., Padera, R. F., Shi, J., Cheng, H. W., Raghuram, S., Arany, Z., Liao, R., Croce, K., Macrae, C. & Feinberg, M. W., Nov 8 2013, In : Circulation Research. 113, 11, p. 1231-1241 11 p.

Research output: Contribution to journalArticle

123 Scopus citations

Molecular communication model of nanoparticle-body interactions in Particulate Drug Delivery Systems

Chahibi, Y., Pierobon, M. & Song, S. O., 2013, Conference Record of the 47th Asilomar Conference on Signals, Systems and Computers. IEEE Computer Society, p. 1051-1055 5 p. 6810452. (Conference Record - Asilomar Conference on Signals, Systems and Computers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

MsrB1 and MICALs Regulate Actin Assembly and Macrophage Function via Reversible Stereoselective Methionine Oxidation

Lee, B. C., Péterfi, Z., Hoffmann, F. K. W., Moore, R. E., Kaya, A., Avanesov, A., Tarrago, L., Zhou, Y., Weerapana, E., Fomenko, D. E., Hoffmann, P. R. & Gladyshev, V. N., Aug 8 2013, In : Molecular Cell. 51, 3, p. 397-404 8 p.

Research output: Contribution to journalArticle

117 Scopus citations

O-demethylations catalyzed by rieske nonheme iron monooxygenases involve the difficult oxidation of a saturated C-H bond

Jiang, W., Wilson, M. A. & Weeks, D. P., Aug 16 2013, In : ACS chemical biology. 8, 8, p. 1687-1691 5 p.

Research output: Contribution to journalArticle

6 Scopus citations
18 Scopus citations

Plant sphingolipids: Function follows form

Markham, J. E., Lynch, D. V., Napier, J. A., Dunn, T. M. & Cahoon, E. B., Jun 2013, In : Current Opinion in Plant Biology. 16, 3, p. 350-357 8 p.

Research output: Contribution to journalReview article

86 Scopus citations

Preface

Wood, C., 2013, In : Current HIV research. 11, 1, p. 1 1 p.

Research output: Contribution to journalEditorial

Prevalence and correlates of Kaposi's sarcoma-associated herpesvirus infection in a sample of men who have sex with men in eastern China

Zhang, T., Lin, H., Minhas, V., Zhu, W., Wood, C. & He, N., Sep 2013, In : Epidemiology and Infection. 141, 9, p. 1823-1830 8 p.

Research output: Contribution to journalArticle

10 Scopus citations

Proline mechanisms of stress survival

Liang, X., Zhang, L., Natarajan, S. K. & Becker, D. F., Sep 20 2013, In : Antioxidants and Redox Signaling. 19, 9, p. 998-1011 14 p.

Research output: Contribution to journalReview article

282 Scopus citations

Rapid detection and quantification of triacylglycerol by HPLC-ELSD in chlamydomonas reinhardtii and chlorella strains

Kobayashi, N., Noel, E. A., Barnes, A., Rosenberg, J., Dirusso, C., Black, P. & Oyler, G. A., Oct 2013, In : Lipids. 48, 10, p. 1035-1049 15 p.

Research output: Contribution to journalArticle

19 Scopus citations

SBML qualitative models: A model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

Chaouiya, C., Bérenguier, D., Keating, S. M., Naldi, A., van Iersel, M. P., Rodriguez, N., Dräger, A., Büchel, F., Cokelaer, T., Kowal, B., Wicks, B., Gonçalves, E., Dorier, J., Page, M., Monteiro, P. T., von Kamp, A., Xenarios, I., de Jong, H., Hucka, M., Klamt, S. & 4 others, Thieffry, D., Le Novère, N., Saez-Rodriguez, J. & Helikar, T., Dec 10 2013, In : BMC systems biology. 7, 135.

Research output: Contribution to journalArticle

64 Scopus citations

Simple, miniaturized blood plasma extraction method

Kim, J. H., Woenker, T., Adamec, J. & Regnier, F. E., Dec 3 2013, In : Analytical chemistry. 85, 23, p. 11501-11508 8 p.

Research output: Contribution to journalArticle

63 Scopus citations

SLC31 (CTR) family of copper transporters in health and disease

Kim, H., Wu, X. & Lee, J., Apr 2013, In : Molecular Aspects of Medicine. 34, 2-3, p. 561-570 10 p.

Research output: Contribution to journalReview article

36 Scopus citations

The hyaluronan receptor for endocytosis (HARE) activates NF-κB-mediated gene expression in response to 40-400-kDa, but not smaller or larger, hyaluronans

Pandey, M. S., Baggenstoss, B. A., Washburn, J., Harris, E. N. & Weigel, P. H., May 17 2013, In : Journal of Biological Chemistry. 288, 20, p. 14068-14079 12 p.

Research output: Contribution to journalComment/debate

42 Scopus citations

The sixteenth iron in the nitrogenase MoFe protein

Zhang, L., Kaiser, J. T., Meloni, G., Yang, K. Y., Spatzal, T., Andrade, S. L. A., Einsle, O., Howard, J. B. & Rees, D. C., Sep 27 2013, In : Angewandte Chemie - International Edition. 52, 40, p. 10529-10532 4 p.

Research output: Contribution to journalArticle

20 Scopus citations

Two novel Physcomitrella patens fatty acid elongases (ELOs): Identification and functional characterization

Eiamsa-Ard, P., Kanjana-Opas, A., Cahoon, E. B., Chodok, P. & Kaewsuwan, S., Apr 2013, In : Applied Microbiology and Biotechnology. 97, 8, p. 3485-3497 13 p.

Research output: Contribution to journalArticle

14 Scopus citations