Research Output

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2019

Applying molecular communication theory to multi-scale integrated models of biological pathways

Sakkaff, Z., Unluturk, B. D. & Pierobon, M., Sep 25 2019, Proceedings of the 6th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2019. Association for Computing Machinery, Inc, 3345495. (Proceedings of the 6th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Applying molecular communication theory to estimate information loss in cell signal transduction: An approach based on cancer transcriptomics

Sakkaff, Z., Immaneni, A. & Pierobon, M., Sep 5 2018, Proceedings of the 5th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2018. Association for Computing Machinery, Inc, (Proceedings of the 5th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Estimating Information Exchange Performance of Engineered Cell-to-cell Molecular Communications: A Computational Approach

Harper, C., Pierobon, M. & Magarini, M., Oct 8 2018, INFOCOM 2018 - IEEE Conference on Computer Communications. Institute of Electrical and Electronics Engineers Inc., p. 729-737 9 p. 8485834. (Proceedings - IEEE INFOCOM; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Estimating the Molecular Information Through Cell Signal Transduction Pathways

Sakkaff, Z., Immaneni, A. & Pierobon, M., Aug 24 2018, 2018 IEEE 19th International Workshop on Signal Processing Advances in Wireless Communications, SPAWC 2018. Institute of Electrical and Electronics Engineers Inc., 8445884. (IEEE Workshop on Signal Processing Advances in Wireless Communications, SPAWC; vol. 2018-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

A biological circuit design for modulated parity-check encoding in molecular communication

Marcone, A., Pierobon, M. & Magarini, M., Jul 28 2017, 2017 IEEE International Conference on Communications, ICC 2017. Debbah, M., Gesbert, D. & Mellouk, A. (eds.). Institute of Electrical and Electronics Engineers Inc., 7997032. (IEEE International Conference on Communications).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

A frequency analysis on calcium T-type signaling in the nervous system

Khodaei, A., Vakilzadian, H. & Pierobon, M., Sep 27 2017, 2017 IEEE International Conference on Electro Information Technology, EIT 2017. IEEE Computer Society, p. 640-644 5 p. 8053442. (IEEE International Conference on Electro Information Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A microfluidic feed forward loop pulse generator for molecular communication

Deng, Y., Pierobon, M. & Nallanathan, A., Jul 1 2017, 2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1-7 7 p. (2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

A parity check analog decoder for molecular communication based on biological circuits

Marcone, A., Pierobon, M. & Magarini, M., Oct 2 2017, INFOCOM 2017 - IEEE Conference on Computer Communications. Institute of Electrical and Electronics Engineers Inc., 8057131. (Proceedings - IEEE INFOCOM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

A simulation model of glucose-insulin metabolism and implementation on OSG

Rad, M. G., Immaneni, A., McCabe, M., Pierobon, M. & Cui, J., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1832-1839 8 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

BioSIMP: Using Software Testing Techniques for Sampling and Inference in Biological Organisms

Cashman, M., Catlett, J. L., Cohen, M. B., Buan, N. R., Sakkaff, Z., Pierobon, M. & Kelley, C. A., Jun 29 2017, Proceedings - 2017 IEEE/ACM 12th International Workshop on Software Engineering for Science, SE4Science 2017. Institute of Electrical and Electronics Engineers Inc., p. 2-8 7 p. 7964305. (Proceedings - 2017 IEEE/ACM 12th International Workshop on Software Engineering for Science, SE4Science 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Digital modulation and achievable information rates of thru-body haptic communications

Hanisch, N. & Pierobon, M., 2017, Disruptive Technologies in Sensors and Sensor Systems. Hall, R. D., Blowers, M. & Williams, J. (eds.). SPIE, 1020603. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 10206).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

End-to-end molecular communication channels in cell metabolism: An information theoretic study

Sakkaf, Z., Catlett, J. L., Cashman, M., Pierobon, M., Buan, N. R., Cohen, M. B. & Kelley, C. A., Sep 27 2017, Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, NanoCom 2017. Association for Computing Machinery, Inc, 21. (Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, NanoCom 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

The Gaussian approximation in soft detection for molecular communication via biological circuits

Marcone, A., Pierobon, M. & Magarini, M., Dec 19 2017, 18th IEEE International Workshop on Signal Processing Advances in Wireless Communications, SPAWC 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-6 6 p. 8227764. (IEEE Workshop on Signal Processing Advances in Wireless Communications, SPAWC; vol. 2017-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations
2016

An intra-body linear channel model based on neuronal subthreshold stimulation

Khodaei, A. & Pierobon, M., Jul 12 2016, 2016 IEEE International Conference on Communications, ICC 2016. Institute of Electrical and Electronics Engineers Inc., 7511483. (2016 IEEE International Conference on Communications, ICC 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Mutual information upper bound of molecular communication based on cell metabolism

Pierobon, M., Sakkaff, Z., Catlett, J. L. & Buan, N. R., Aug 9 2016, SPAWC 2016 - 17th IEEE International Workshop on Signal Processing Advances in Wireless Communications. Institute of Electrical and Electronics Engineers Inc., 7536835. (IEEE Workshop on Signal Processing Advances in Wireless Communications, SPAWC; vol. 2016-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Subthreshold linear modeling of dendritic trees: A computational approach

Khodaei, A. & Pierobon, M., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 235-238 4 p. 7590683. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

The assurance timeline: Building assurance cases for synthetic biology

Cohen, M. B., Firestone, J. & Pierobon, M., 2016, Computer Safety, Reliability, and Security, SAFECOMP 2016 - Workshops ASSURE, DECSoS, SASSUR, and TIPS, Proceedings. Guiochet, J., Schoitsch, E., Bitsch, F. & Skavhaug, A. (eds.). Springer Verlag, p. 75-86 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9923 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2015

A biochemical filter for frequency-based signal reception in molecular communication

Laddomada, M. & Pierobon, M., 2015, 2015 IEEE Global Communications Conference, GLOBECOM 2015. Institute of Electrical and Electronics Engineers Inc., 7417148. (2015 IEEE Global Communications Conference, GLOBECOM 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A crosstalk-based linear filter in biochemical signal transduction pathways for the internet of bio-things

Laddomada, M. & Pierobon, M., Aug 4 2015, 2015 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 5520-5524 5 p. 7179027. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2015-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
2014

A molecular communication system model based on biological circuits

Pierobon, M., 2014, Proceedings of the 1st ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2014. Association for Computing Machinery, 2619958. (Proceedings of the 1st ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

11 Scopus citations
2013

Molecular communication model of nanoparticle-body interactions in Particulate Drug Delivery Systems

Chahibi, Y., Pierobon, M. & Song, S. O., 2013, Conference Record of the 47th Asilomar Conference on Signals, Systems and Computers. IEEE Computer Society, p. 1051-1055 5 p. 6810452. (Conference Record - Asilomar Conference on Signals, Systems and Computers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2012

Intersymbol and co-channel interference in diffusion-based molecular communication

Pierobon, M. & Akyildiz, I. F., 2012, 2012 IEEE International Conference on Communications, ICC 2012. p. 6126-6131 6 p. 6364970. (IEEE International Conference on Communications).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

28 Scopus citations
2011

Differential analysis of lipids in xylose fermenting S. cerevisiae 424A (LNH-ST) and its ethanol resistant variant S. cerevisiae 424A (LNH-ST)-ER

Kim, J. H., Adamec, J., Mosier, N. S., Ho, N. W. Y. & Sedlak, M., 2011, 11AIChE - 2011 AIChE Annual Meeting, Conference Proceedings. (11AIChE - 2011 AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Differential analysis of lipids in xylose fermenting S. cerevisiae 424A (LNH-ST) and its ethanol resistant variant S. cerevisiae 424A (LNH-ST)-ER

Kim, J. H., Adamec, J., Mosier, N. S., Ho, N. W. Y. & Sedlak, M., 2011, Sustainable Engineering Forum: Core Programming Topic at the 2011 AIChE Annual Meeting. AIChE, p. 776-777 2 p. (Sustainable Engineering Forum: Core Programming Topic at the 2011 AIChE Annual Meeting; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Effect of furfural on xylose fermentation using saccharomyces cerevisiae 424A (LNH-ST)

Wu, C. L., Mosier, N. S., Kim, J. H., Adamec, J., Ho, N. W. Y. & Sedlak, M., 2011, Sustainable Engineering Forum: Core Programming Topic at the 2011 AIChE Annual Meeting. AIChE, 1 p. (Sustainable Engineering Forum: Core Programming Topic at the 2011 AIChE Annual Meeting; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Exploring the physical channel of diffusion-based molecular communication by simulation

Llatser, I., Pascual, I., Garralda, N., Cabellos-Aparicio, A., Pierobon, M., Alarcón, E. & Solé-Pareta, J., 2011, 2011 IEEE Global Telecommunications Conference, GLOBECOM 2011. 6134028. (GLOBECOM - IEEE Global Telecommunications Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

21 Scopus citations

Information capacity of diffusion-based molecular communication in nanonetworks

Pierobon, M. & Akyildiz, I. F., 2011, 2011 Proceedings IEEE INFOCOM. p. 506-510 5 p. 5935214. (Proceedings - IEEE INFOCOM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

40 Scopus citations

Simulation-based evaluation of the diffusion-based physical channel in molecular nanonetworks

Garralda, N., Llatser, I., Cabellos-Aparicio, A. & Pierobon, M., 2011, 2011 IEEE Conference on Computer Communications Workshops, INFOCOM WKSHPS 2011. p. 443-448 6 p. 5928854. (2011 IEEE Conference on Computer Communications Workshops, INFOCOM WKSHPS 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

41 Scopus citations
2010

Propagation models for nanocommunication networks

Akyildiz, I. F., Jornet, J. M. & Pierobon, M., 2010, EuCAP 2010 - The 4th European Conference on Antennas and Propagation. 5505714. (EuCAP 2010 - The 4th European Conference on Antennas and Propagation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

25 Scopus citations
2009

Use of average mutual information for studying changes in HIV populations

Sayood, K., Hoffman, F. & Wood, C., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3861-3864 4 p. 5332579. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2008

Development of fluorescent contrast agents for optical imaging of mouse disease models

Kovar, J., Simpson, M., Schutz-Geschwender, A., Xu, X., Volcheck, W. M., Sevickmuraca, E. & Olive, D. M., 2008, Molecular Probes for Biomedical Applications II. 686707. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6867).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2007

Discussion

Tabas, I., Daum, G., Yang, R., Spiegelman, B. M., Black, P. N., Shi, Y. & Bernlohr, D. A., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 151-154 4 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Discussion

Bernlohr, D. A., Li, P., Black, P. N., Shi, Y., Glass, C. K. & Spiegelman, B. M., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 159-161 3 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Discussion

Black, P. N., Bernlohr, D. A., Shi, Y., Attie, A. D., Hotamisligil, G. S., Spiegelman, B. M., Tabas, I., O'Rahilly, S., Sabin, M., Saito, M., Glass, C. K. & Daum, G., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 121-126 6 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Discussion

Spiegelman, B. M., Muoio, D. M., Black, P. N., Hotamisligil, G. S., Zhang, C. Y., Kadowaki, T., Bernlohr, D. A., Shi, Y. & Attie, A. D., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 38-46 9 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Final discussion: Nutrition, ageing and lipotoxicity

Tabas, I., Black, P. N., Spiegelman, B. M., O'Rahilly, S., Bernlohr, D. A., Glass, C. K., Muoio, D. M. & Attie, A. D., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 200-203 4 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nickel enzymes involved in catalyzing the reduction of CO2 to methane and acetic acid

Ragsdale, S. W., Kunz, R. C., Dey, M., Seravalli, J., Brabec, B., Doukov, T. I. & Drennan, C. L., 2007, 233rd ACS National Meeting, Abstracts of Scientific Papers. (ACS National Meeting Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Vectorial acylation: Linking fatty acid transport and activation to metabolic trafficking

Black, P. N. & DiRusso, C. C., 2007, Fatty Acids and Lipotoxicity in Obesity and Diabetes. p. 127-138 12 p. (Novartis Foundation Symposium; vol. 286).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

27 Scopus citations

XAFS at the Canadian light source

Jiang, D. T., Chen, N., Zhang, L., Malgorzata, K., Wright, G., Igarashi, R., Beauregard, D., Kirkham, M. & McKibben, M., 2007, X-RAY ABSORPTION FINE STRUCTURE - XAFS13: 13th International Conference. p. 893-895 3 p. (AIP Conference Proceedings; vol. 882).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations
2006

3-D body posture tracking for human action template matching

Pierobon, M., Marcon, M., Sarti, A. & Tubaro, S., 2006, 2006 IEEE International Conference on Acoustics, Speech, and Signal Processing - Proceedings. p. II501-II504 1660389. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations
2005

Clustering of human actions using invariant body shape descriptor and dynamic time warping

Pierobon, M., Marcon, M., Sarti, A. & Tubaro, S., 2005, IEEE Conference on Advanced Video and Signal Based Based Surveillance - Proceedings of AVSS 2005. p. 22-27 6 p. 1577237. (IEEE International Conference on Advanced Video and Signal Based Surveillance - Proceedings of AVSS 2005; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

16 Scopus citations
2004

New techniques for generation and analysis of evolutionary trees

Wang, C., Scott, S. D., Tao, Q., Fomenko, D. E. & Gladyshev, V. N., 2004, Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04. Valafar, F. & Valafar, H. (eds.). p. 283-289 7 p. (Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04).

Research output: Chapter in Book/Report/Conference proceedingConference contribution