Research Output

2020

Adaptations of Interferon Regulatory Factor 3 with Transition from Terrestrial to Aquatic Life

Angeletti, M., Hsu, W. L. N., Majo, N., Moriyama, H., Moriyama, E. N. & Zhang, L., Dec 1 2020, In : Scientific reports. 10, 1, 4508.

Research output: Contribution to journalArticle

Open Access

Analysis of Student Perceptions of Just-In-Time Teaching Pedagogy in PharmD Microbiology and Immunology Courses

Madiraju, C., Tellez-Corrales, E., Hua, H., Stec, J., Nauli, A. M. & Brown, D. M., Feb 28 2020, In : Frontiers in immunology. 11, 351.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A new genus and two new species of unarmed hymenolepidid cestodes (Cestoda: Hymenolepididae) from geomyid rodents in Mexico and Costa Rica

Gardner, S. L., Dursahinhan, A. T., Campbell, M. L. & Elizabeth Rácz, S., Apr 20 2020, In : Zootaxa. 4766, 2, p. 358-376 19 p.

Research output: Contribution to journalArticle

Open Access

An ortholog of the Vasa intronic gene is required for small RNA-mediated translation repression in Chlamydomonas reinhardtii

Ma, X., Ibrahim, F., Kim, E. J., Shaver, S., Becker, J., Razvi, F., Cerny, R. L. & Cerutti, H., Jan 7 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 1, p. 761-770 10 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men

Nguyen, L. H., Ma, W., Wang, D. D., Cao, Y., Mallick, H., Gerbaba, T. K., Lloyd-Price, J., Abu-Ali, G., Hall, A. B., Sikavi, D., Drew, D. A., Mehta, R. S., Arze, C., Joshi, A. D., Yan, Y., Branck, T., DuLong, C., Ivey, K. L., Ogino, S., Rimm, E. B. & 5 others, Song, M., Garrett, W. S., Izard, J., Huttenhower, C. & Chan, A. T., Apr 2020, In : Gastroenterology. 158, 5, p. 1313-1325 13 p.

Research output: Contribution to journalArticle

Open Access

Author Correction: Origin of complexity in haemoglobin evolution (Nature, (2020), 581, 7809, (480-485), 10.1038/s41586-020-2292-y)

Pillai, A. S., Chandler, S. A., Liu, Y., Signore, A. V., Cortez-Romero, C. R., Benesch, J. L. P., Laganowsky, A., Storz, J. F., Hochberg, G. K. A. & Thornton, J. W., Jul 16 2020, In : Nature. 583, 7816, p. E26

Research output: Contribution to journalComment/debate

Open Access

Biochemical pedomorphosis and genetic assimilation in the hypoxia adaptation of Tibetan antelope

Signore, A. V. & Storz, J. F., Jun 2020, In : Science Advances. 6, 25, eabb544.

Research output: Contribution to journalArticle

Open Access

Characterization of a Species E Adenovirus Vector as a Zika virus vaccine

Bullard, B. L., Corder, B. N., Gordon, D. N., Pierson, T. C. & Weaver, E. A., Dec 1 2020, In : Scientific reports. 10, 1, 3613.

Research output: Contribution to journalArticle

Open Access

Characterization of key bacterial species in the Daphnia magna microbiota using shotgun metagenomics

Cooper, R. O. & Cressler, C. E., Dec 1 2020, In : Scientific reports. 10, 1, 652.

Research output: Contribution to journalArticle

Open Access

Combined TLR4 and TLR9 agonists induce distinct phenotypic changes in innate immunity in vitro and in vivo

Lampe, A. T., Puniya, B. L., Pannier, A. K., Helikar, T. & Brown, D. M., Sep 2020, In : Cellular Immunology. 355, 104149.

Research output: Contribution to journalArticle

Coordinated changes across the O2 transport pathway underlie adaptive increases in thermogenic capacity in high-altitude deer mice

Tate, K. B., Wearing, O. H., Ivy, C. M., Cheviron, Z. A., Storz, J. F., McClelland, G. B. & Scott, G. R., May 27 2020, In : Proceedings. Biological sciences. 287, 1927, 1 p.

Research output: Contribution to journalArticle

Open Access

Darwin's Fancy Revised: An Updated Understanding of the Genomic Constitution of Pigeon Breeds

Pacheco, G., Van Grouw, H., Shapiro, M. D., Gilbert, M. T. P., Vieira, F. G. & Storz, J., Mar 17 2020, In : Genome Biology and Evolution. 12, 3, p. 136-150 15 p.

Research output: Contribution to journalArticle

Open Access

EPCES and EPSVR: Prediction of B-Cell antigenic epitopes on protein surfaces with conformational information

Liang, S., Zheng, D., Yao, B. & Zhang, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 289-297 9 p. (Methods in Molecular Biology; vol. 2131).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

Faktorová, D., Nisbet, R. E. R., Fernández Robledo, J. A., Casacuberta, E., Sudek, L., Allen, A. E., Ares, M., Aresté, C., Balestreri, C., Barbrook, A. C., Beardslee, P., Bender, S., Booth, D. S., Bouget, F. Y., Bowler, C., Breglia, S. A., Brownlee, C., Burger, G., Cerutti, H., Cesaroni, R. & 93 others, Chiurillo, M. A., Clemente, T., Coles, D. B., Collier, J. L., Cooney, E. C., Coyne, K., Docampo, R., Dupont, C. L., Edgcomb, V., Einarsson, E., Elustondo, P. A., Federici, F., Freire-Beneitez, V., Freyria, N. J., Fukuda, K., García, P. A., Girguis, P. R., Gomaa, F., Gornik, S. G., Guo, J., Hampl, V., Hanawa, Y., Haro-Contreras, E. R., Hehenberger, E., Highfield, A., Hirakawa, Y., Hopes, A., Howe, C. J., Hu, I., Ibañez, J., Irwin, N. A. T., Ishii, Y., Janowicz, N. E., Jones, A. C., Kachale, A., Fujimura-Kamada, K., Kaur, B., Kaye, J. Z., Kazana, E., Keeling, P. J., King, N., Klobutcher, L. A., Lander, N., Lassadi, I., Li, Z., Lin, S., Lozano, J. C., Luan, F., Maruyama, S., Matute, T., Miceli, C., Minagawa, J., Moosburner, M., Najle, S. R., Nanjappa, D., Nimmo, I. C., Noble, L., Novák Vanclová, A. M. G., Nowacki, M., Nuñez, I., Pain, A., Piersanti, A., Pucciarelli, S., Pyrih, J., Rest, J. S., Rius, M., Robertson, D., Ruaud, A., Ruiz-Trillo, I., Sigg, M. A., Silver, P. A., Slamovits, C. H., Jason Smith, G., Sprecher, B. N., Stern, R., Swart, E. C., Tsaousis, A. D., Tsypin, L., Turkewitz, A., Turnšek, J., Valach, M., Vergé, V., von Dassow, P., von der Haar, T., Waller, R. F., Wang, L., Wen, X., Wheeler, G., Woods, A., Zhang, H., Mock, T., Worden, A. Z. & Lukeš, J., May 1 2020, In : Nature Methods. 17, 5, p. 481-494 14 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Healthy pregnancies and essential fats: Focus group discussions with Zambian women on dietary need and acceptability of a novel RUSF containing fish oil DHA

Chunda-Liyoka, C., Lubeya, M. K., Imakando, M., Kisling, S., Majid, S., Willis, M. S., Wood, C., Kankasa, C. & Dirusso, C. C., Feb 10 2020, In : BMC Pregnancy and Childbirth. 20, 1, 93.

Research output: Contribution to journalArticle

Open Access

HIV-1 subtypes and drug resistance mutations among female sex workers varied in different cities and regions of the Democratic Republic of Congo

Kwon, E. H., Musema, G. M. A., Boelter, J., Townsend, S., Tshala-Katumbay, D., Kayembe, P. K., West, J. & Wood, C., 2020, In : PloS one. 15, 2, e0228670.

Research output: Contribution to journalArticle

Open Access

How the Cervical Microbiota Contributes to Cervical Cancer Risk in Sub-Saharan Africa

Klein, C., Kahesa, C., Mwaiselage, J., West, J. T., Wood, C. & Angeletti, P. C., Feb 12 2020, In : Frontiers in Cellular and Infection Microbiology. 10, 23.

Research output: Contribution to journalReview article

Open Access

Interleukin-21 enhances the antibody avidity elicited by DNA prime and MVA boost vaccine

Fan, W., Wan, Y. & Li, Q., Jan 2020, In : Cytokine. 125, 154814.

Research output: Contribution to journalArticle

Lack of CD8+ T-cell co-localization with Kaposi's sarcoma-associated herpesvirus infected cells in Kaposi's sarcoma tumors

Lidenge, S. J., Tso, F. Y., Ngalamika, O., Kolape, J., Ngowi, J. R., Mwaiselage, J., Wood, C. & West, J. T., Apr 28 2020, In : Oncotarget. 11, 17, p. 1556-1572 17 p.

Research output: Contribution to journalArticle

Open Access

MADS78 and MAdS79 are essential regulators of early seed development in RICE1[open]

Paul, P., Dhatt, B. K., Miller, M., Folsom, J. J., Wang, Z., Krassovskaya, I., Liu, K., Sandhu, J., Yu, H., Zhang, C., Obata, T., Staswick, P. & Walia, H., Feb 2020, In : Plant physiology. 182, 2, p. 933-948 16 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Mitochondrial DNA repair in an Arabidopsis thaliana uracil N-glycosylase mutant

Wynn, E., Purfeerst, E. & Christensen, A., Feb 2020, In : Plants. 9, 2, 261.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Mitochondrial localization of Dictyostelium discoideum dUTPase mediated by its N-terminus

Chia, C. P., Inoguchi, N., Varon, K. C., Bartholomai, B. M. & Moriyama, H., Jan 7 2020, In : BMC Research Notes. 13, 1, 16.

Research output: Contribution to journalArticle

Open Access

More than just a powerhouse

Christensen, A. C., Jan 1 2020, In : Nature Plants. 6, 1, p. 5-6 2 p.

Research output: Contribution to journalComment/debate

Mycoplasma co-infection is associated with cervical cancer risk

Klein, C., Samwel, K., Kahesa, C., Mwaiselage, J., West, J. T., Wood, C. & Angeletti, P. C., May 2020, In : Cancers. 12, 5, 1093.

Research output: Contribution to journalArticle

Open Access

Next-generation transcriptome assembly and analysis: Impact of ploidy

Voshall, A. & Moriyama, E. N., Apr 1 2020, In : Methods. 176, p. 14-24 11 p.

Research output: Contribution to journalArticle

Ontogenesis of evolved changes in respiratory physiology in deer mice native to high altitude

Ivy, C. M., Greaves, M. A., Sangster, E. D., Robertson, C. E., Natarajan, C., Storz, J. F., McClelland, G. B. & Scott, G. R., 2020, In : Journal of Experimental Biology. 223, 4, jeb219360.

Research output: Contribution to journalArticle

Open Access

Origin of complexity in haemoglobin evolution

Pillai, A. S., Chandler, S. A., Liu, Y., Signore, A. V., Cortez-Romero, C. R., Benesch, J. L. P., Laganowsky, A., Storz, J. F., Hochberg, G. K. A. & Thornton, J. W., May 28 2020, In : Nature. 581, 7809, p. 480-485 6 p.

Research output: Contribution to journalArticle

Outcome markers of ART-treated HIV+ patients with early stage Kaposi's sarcoma

Ngalamika, O., Tso, F. Y., Lidenge, S., Munsaka, S., Shea, D., Wood, C. & West, J., 2020, In : PloS one. 15, 7, p. e0235865

Research output: Contribution to journalArticle

Open Access

Oxygenation properties of hemoglobin and the evolutionary origins of isoform multiplicity in an amphibious air-breathing fish, the blue-spotted mudskipper (Boleophthalmus pectinirostris)

Storz, J. F., Natarajan, C., Grouleff, M. K., Vandewege, M., Hoffmann, F. G., You, X., Venkatesh, B. & Fago, A., 2020, In : Journal of Experimental Biology. 223, 2, jeb217307.

Research output: Contribution to journalArticle

Open Access

Perivascular macrophages in the neonatal macaque brain undergo massive necroptosis after simian immunodeficiency virus infection

Bohannon, D. G., Wang, Y., Reinhart, C. H., Hattler, J. B., Luo, J., Okhravi, H. R., Zhang, J., Li, Q., Kuroda, M. J., Kim, J. & Kim, W. K., May 1 2020, In : Brain Pathology. 30, 3, p. 603-613 11 p.

Research output: Contribution to journalArticle

Prevalence of Kaposi's sarcoma-associated herpesvirus and transfusion-transmissible infections in Tanzanian blood donors

Lidenge, S. J., Tran, T., Tso, F. Y., Ngowi, J. R., Shea, D. M., Mwaiselage, J., Wood, C. & West, J. T., Jun 2020, In : International Journal of Infectious Diseases. 95, p. 204-209 6 p.

Research output: Contribution to journalArticle

Open Access

Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology (Nature Methods, (2020), 17, 5, (481-494), 10.1038/s41592-020-0796-x)

Faktorová, D., Nisbet, R. E. R., Fernández Robledo, J. A., Casacuberta, E., Sudek, L., Allen, A. E., Ares, M., Aresté, C., Balestreri, C., Barbrook, A. C., Beardslee, P., Bender, S., Booth, D. S., Bouget, F. Y., Bowler, C., Breglia, S. A., Brownlee, C., Burger, G., Cerutti, H., Cesaroni, R. & 93 others, Chiurillo, M. A., Clemente, T., Coles, D. B., Collier, J. L., Cooney, E. C., Coyne, K., Docampo, R., Dupont, C. L., Edgcomb, V., Einarsson, E., Elustondo, P. A., Federici, F., Freire-Beneitez, V., Freyria, N. J., Fukuda, K., García, P. A., Girguis, P. R., Gomaa, F., Gornik, S. G., Guo, J., Hampl, V., Hanawa, Y., Haro-Contreras, E. R., Hehenberger, E., Highfield, A., Hirakawa, Y., Hopes, A., Howe, C. J., Hu, I., Ibañez, J., Irwin, N. A. T., Ishii, Y., Janowicz, N. E., Jones, A. C., Kachale, A., Fujimura-Kamada, K., Kaur, B., Kaye, J. Z., Kazana, E., Keeling, P. J., King, N., Klobutcher, L. A., Lander, N., Lassadi, I., Li, Z., Lin, S., Lozano, J. C., Luan, F., Maruyama, S., Matute, T., Miceli, C., Minagawa, J., Moosburner, M., Najle, S. R., Nanjappa, D., Nimmo, I. C., Noble, L., Novák Vanclová, A. M. G., Nowacki, M., Nuñez, I., Pain, A., Piersanti, A., Pucciarelli, S., Pyrih, J., Rest, J. S., Rius, M., Robertson, D., Ruaud, A., Ruiz-Trillo, I., Sigg, M. A., Silver, P. A., Slamovits, C. H., Jason Smith, G., Sprecher, B. N., Stern, R., Swart, E. C., Tsaousis, A. D., Tsypin, L., Turkewitz, A., Turnšek, J., Valach, M., Vergé, V., von Dassow, P., von der Haar, T., Waller, R. F., Wang, L., Wen, X., Wheeler, G., Woods, A., Zhang, H., Mock, T., Worden, A. Z. & Lukeš, J., May 1 2020, In : Nature Methods. 17, 5, 1 p.

Research output: Contribution to journalComment/debate

Open Access

Radiomics-based outcome prediction for pancreatic cancer following stereotactic body radiotherapy

Parr, E., Du, Q., Zhang, C., Lin, C., Kamal, A., McAlister, J., Liang, X., Bavitz, K., Rux, G., Hollingsworth, M., Baine, M. & Zheng, D., Apr 2020, In : Cancers. 12, 4, 1051.

Research output: Contribution to journalArticle

Open Access

Sex and suicide: The curious case of Toll-like receptors

Navarro-Costa, P. A., Molaro, A., Misra, C. S., Meiklejohn, C. D. & Ellis, P. J., 2020, In : PLoS biology. 18, 3, e3000663.

Research output: Contribution to journalArticle

Open Access

Starving the Enemy? Feeding Behavior Shapes Host-Parasite Interactions

Hite, J. L., Pfenning, A. C. & Cressler, C. E., Jan 2020, In : Trends in Ecology and Evolution. 35, 1, p. 68-80 13 p.

Research output: Contribution to journalReview article

Structure and function of crocodilian hemoglobins and allosteric regulation by chloride, ATP, and CO2

Fago, A., Natarajan, C., Pettinati, M., Hoffmann, F. G., Wang, T., Weber, R. E., Drusin, S. I., Issoglio, F., Martí, M. A., Estrin, D. & Storz, J. F., Mar 1 2020, In : American journal of physiology. Regulatory, integrative and comparative physiology. 318, 3, p. R657-R667

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

SVMTriP: A method to predict B-Cell linear antigenic epitopes

Yao, B., Zheng, D., Liang, S. & Zhang, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 299-307 9 p. (Methods in Molecular Biology; vol. 2131).

Research output: Chapter in Book/Report/Conference proceedingChapter

TGCnA: temporal gene coexpression network analysis using a low-rank plus sparse framework

Li, J., Lai, Y., Zhang, C. & Zhang, Q., Apr 25 2020, In : Journal of Applied Statistics. 47, 6, p. 1064-1083 20 p.

Research output: Contribution to journalArticle

1 Scopus citations

The kaposi's sarcoma-associated herpesvirus (KSHV) gH/gL Complex is the predominant neutralizing antigenic determinant in KSHV-infected individuals

Mortazavi, Y., Lidenge, S. J., Tran, T., West, J. T., Wood, C. & Tso, F. Y., 2020, In : Viruses. 12, 3, 256.

Research output: Contribution to journalArticle

Open Access
2019

Adaptive Changes in Hemoglobin Function in High-Altitude Tibetan Canids Were Derived via Gene Conversion and Introgression

Signore, A. V., Yang, Y. Z., Yang, Q. Y., Qin, G., Moriyama, H., Ge, R. L., Storz, J. F. & Wilke, C., Oct 1 2019, In : Molecular biology and evolution. 36, 10, p. 2227-2237 11 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

A double humanized blt-mice model featuring a stable human-like gut microbiome and human immune system

Daharsh, L., Zhang, J., Ramer-Tait, A. & Li, Q., Aug 2019, In : Journal of Visualized Experiments. 2019, 150, e59773.

Research output: Contribution to journalArticle

3 Scopus citations

A Human Papillomavirus-Independent Cervical Cancer Animal Model Reveals Unconventional Mechanisms of Cervical Carcinogenesis

He, C., Lv, X., Huang, C., Angeletti, P. C., Hua, G., Dong, J., Zhou, J., Wang, Z., Ma, B., Chen, X., Lambert, P. F., Rueda, B. R., Davis, J. S. & Wang, C., Mar 5 2019, In : Cell Reports. 26, 10, p. 2636-2650.e5

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

A New Species of Ancylostoma (Nemata: Strongylida: Ancylostomatidae) from Two Species of Ctenomys in Lowland Bolivia

Drabik, G. O. & Gardner, S. L., Dec 1 2019, In : The Journal of parasitology. 105, 6, p. 904-912 9 p.

Research output: Contribution to journalArticle

A review of 65 years of human adenovirus seroprevalence

Mennechet, F. J. D., Paris, O., Ouoba, A. R., Salazar Arenas, S., Sirima, S. B., Takoudjou Dzomo, G. R., Diarra, A., Traore, I. T., Kania, D., Eichholz, K., Weaver, E. A., Tuaillon, E. & Kremer, E. J., Jun 3 2019, In : Expert Review of Vaccines. 18, 6, p. 597-613 17 p.

Research output: Contribution to journalReview article

11 Scopus citations

A self-marker-like protein governs hemocyte allorecognition in Halocynthia roretzi

Ema, M., Okada, T., Takahashi, M., Uchiyama, M., Kubo, H., Moriyama, H., Miyakawa, H. & Matsumoto, M., Dec 16 2019, In : Zoological Letters. 5, 1, 34.

Research output: Contribution to journalArticle

Open Access

A single-cycle adenovirus type 7 vaccine for prevention of acute respiratory disease

Bullard, B. L., Corder, B. N. & Weaver, E. A., May 2019, In : Viruses. 11, 5, 413.

Research output: Contribution to journalArticle

Open Access

A synthetic cdo/csad taurine pathway in the green unicellular alga Chlamydomonas reinhardtii

Tevatia, R., Payne, S., Allen, J., White, D., Clemente, T. E., Cerutti, H., Demirel, Y. & Blum, P., Jun 2019, In : Algal Research. 40, 101491.

Research output: Contribution to journalArticle

1 Scopus citations

Author Correction: Macrophage-associated wound healing contributes to African green monkey SIV pathogenesis control (Nature Communications, (2019), 10, 1, (5101), 10.1038/s41467-019-12987-9)

Barrenas, F., Raehtz, K., Xu, C., Law, L., Green, R. R., Silvestri, G., Bosinger, S. E., Nishida, A., Li, Q., Lu, W., Zhang, J., Thomas, M. J., Chang, J., Smith, E., Weiss, J. M., Dawoud, R. A., Richter, G. H., Trichel, A., Ma, D., Peng, X. & 4 others, Komorowski, J., Apetrei, C., Pandrea, I. & Gale, M., Dec 1 2019, In : Nature communications. 10, 1, 5768.

Research output: Contribution to journalComment/debate

Open Access