Research Output

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2020

EPCES and EPSVR: Prediction of B-Cell antigenic epitopes on protein surfaces with conformational information

Liang, S., Zheng, D., Yao, B. & Zhang, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 289-297 9 p. (Methods in Molecular Biology; vol. 2131).

Research output: Chapter in Book/Report/Conference proceedingChapter

SVMTriP: A method to predict B-Cell linear antigenic epitopes

Yao, B., Zheng, D., Liang, S. & Zhang, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 299-307 9 p. (Methods in Molecular Biology; vol. 2131).

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Deletion mutagenesis and identification of causative mutations in Maize

Jia, S., Li, A., Zhang, C. & Holding, D., 2018, Methods in Molecular Biology. Humana Press Inc., p. 97-108 12 p. (Methods in Molecular Biology; vol. 1676).

Research output: Chapter in Book/Report/Conference proceedingChapter

Enhancement of Metallosphaera sedula Bioleaching by Targeted Recombination and Adaptive Laboratory Evolution

McCarthy, S., Ai, C. & Blum, P., Jan 1 2018, Advances in Applied Microbiology. Gadd, G. M. & Sariaslani, S. (eds.). Academic Press Inc., p. 135-165 31 p. (Advances in Applied Microbiology; vol. 104).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations
2017

Analysis of the uridylation of both ARGONAUTE-bound miRNAs and 5′ cleavage products of their target RNAs in plants

Ren, G., Wang, X. & Yu, B., 2017, Methods in Molecular Biology. Humana Press Inc., p. 23-37 15 p. (Methods in Molecular Biology; vol. 1640).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Gene silencing in archaeplastida algae

Ma, X., Kim, E. J. & Cerutti, H., Jan 1 2017, Plant Gene Silencing: Mechanisms and Applications. CABI International, p. 75-93 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Mitochondrial DNA repair and genome evolution

Christensen, A. C., Jan 1 2017, Annual Plant Reviews, Volume 50: Plant Mitochondria, Second Edition. wiley, p. 11-31 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Scopus citations

Prediction of protein phosphorylation sites by integrating secondary structure information and other one-dimensional structural properties

Dou, Y., Yao, B. & Zhang, C., 2017, Methods in Molecular Biology. Humana Press Inc., p. 265-274 10 p. (Methods in Molecular Biology; vol. 1484).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2016

Functional genomic insights into regulatory mechanisms of high-altitude adaptation

Storz, J. F. & Cheviron, Z. A., 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 113-128 16 p. (Advances in Experimental Medicine and Biology; vol. 903).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations

RNA-mediated silencing in eukaryotes: Evolution of protein components and biological roles

Casas-Mollano, J. A., Zacarias, E., Kim, E. J., Hernández, G. & Cerutti, H., Jan 1 2016, Evolution of the Protein Synthesis Machinery and Its Regulation. Springer International Publishing, p. 513-529 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations
2015

Metagenomics for Bacteriology

del Castillo, E. & Izard, J., 2015, Metagenomics for Microbiology. Elsevier Inc., p. 113-134 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Promises and Prospects of Microbiome Studies

Rivera, M. C. & Izard, J., 2015, Metagenomics for Microbiology. Elsevier Inc., p. 145-159 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Steps in Metagenomics: Let's Avoid Garbage in and Garbage Out

Izard, J., 2015, Metagenomics for Microbiology. Elsevier Inc., p. 1-23 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2013

Resveratrol and Inflammatory-Autoimmune Diseases

Petro, T. M., 2013, Bioactive Food as Interventions for Arthritis and Related Inflammatory Diseases. Elsevier Inc., p. 461-471 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Thoughts on quorum sensing and fungal dimorphism

Nickerson, K. W., Atkin, A. L., Hargarten, J. C., Pathirana, R. & Hasim, S., Oct 1 2013, Biocommunication of Fungi. Springer Netherlands, p. 189-204 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Worms, Nematoda

Gardner, S. L., Jan 1 2013, Encyclopedia of Biodiversity: Second Edition. Elsevier Inc., p. 420-436 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2012

Imaging luciferase-expressing viruses

Barry, M. A., May, S. & Weaver, E. A., 2012, Oncolytic Viruses: Methods and Protocols. Kirn, D., Kirn, D., Thorne, S., Liu, T-C. & Liu, T-C. (eds.). p. 79-87 9 p. (Methods in Molecular Biology; vol. 797).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Selective Attention, Priming, and Foraging Behavior

Kamil, A. C. & Bond, A. B., Mar 22 2012, Comparative Cognition: Experimental Explorations of Animal Intelligence. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

Viral malignancies in HIV-associated immune deficiency

Kumar, P., Minhas, V. & Wood, C., 2012, Cancer Associated Viruses. Robertson, E., Jasmin, J-F. & Lisanti, M. (eds.). p. 819-851 33 p. (Current Cancer Research; vol. 8).

Research output: Chapter in Book/Report/Conference proceedingChapter

2011

Engineering thermoacidophilic archaea using linear DNA recombination

Maezato, Y., Dana, K. & Blum, P., 2011, Strain Engineering: Methods and Protocols. Williams, J. (ed.). p. 435-445 11 p. (Methods in Molecular Biology; vol. 765).

Research output: Chapter in Book/Report/Conference proceedingChapter

17 Scopus citations

Epigenetic regulatory mechanisms in plants

Avramova, Z., 2011, Handbook of Epigenetics. Elsevier Inc., p. 251-278 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast bioinformatics and strain engineering resources

Atkin, A. L., 2011, Strain Engineering: Methods and Protocols. Williams, J. (ed.). p. 173-187 15 p. (Methods in Molecular Biology; vol. 765).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2010

Turnover of mature miRNAs and siRNAs in plants and algae

Cerutti, H. & Ibrahim, F., 2010, Regulation of microRNAs. Grosshans, H. (ed.). p. 124-139 16 p. (Advances in Experimental Medicine and Biology; vol. 700).

Research output: Chapter in Book/Report/Conference proceedingChapter

14 Scopus citations
2009

AIDS and associated malignancies

Harrington, W. J., Wood, C. & Wood, C., 2009, DNA Tumor Viruses. Springer US, p. 683-702 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Glycerolipid Biosynthesis

Riekhof, W. R. & Benning, C., 2009, The Chlamydomonas Sourcebook 3-Vol set. Elsevier Inc., Vol. 2. p. 41-68 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

25 Scopus citations

Laboratory selection studies of life-history physiology in insects

Zera, A. J. & Harshman, L. G., Dec 3 2009, Experimental Evolution: Concepts, Methods, and Applications of Selection Experiments. University of California Press, p. 217-262 46 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

19 Scopus citations
2007

Approaches for Studying MicroRNA and Small Interfering RNA Methylation In Vitro and In Vivo

Yang, Z., Vilkaitis, G., Yu, B., Klimašauskas, S. & Chen, X., 2007, MicroRNA Methods. Rossi, J. & Hannon, G. (eds.). p. 139-154 16 p. (Methods in Enzymology; vol. 427).

Research output: Chapter in Book/Report/Conference proceedingChapter

25 Scopus citations
2005

Protein family classification with discriminant function analysis

Moriyama, E. N. & Kim, J., 2005, Genome Exploitation: Data Mining the Genome. Springer US, p. 121-132 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

11 Scopus citations