Research Output

2020

Activity of diphenyl ether benzyl amines against Human African Trypanosomiasis

Hagen, J. P., Darner, G., Anderson, S., Higgins, K., Leas, D. A., Mitra, A., Mashinson, V., Wol, T., Vera-Esquivel, C., Belter, B., Cal, M., Kaiser, M., Wallick, A., Warner, R. C. & Davis, P. H., Apr 2020, In : Bioorganic Chemistry. 97, 103590.

Research output: Contribution to journalArticle

1 Scopus citations

A new chemotype with promise against Trypanosoma cruzi

Wang, X., Cal, M., Kaiser, M., Buckner, F. S., Lepesheva, G. I., Sanford, A. G., Wallick, A. I., Davis, P. H. & Vennerstrom, J. L., Jan 1 2020, In : Bioorganic and Medicinal Chemistry Letters. 30, 1, 126778.

Research output: Contribution to journalArticle

Assessment of Gene Expression Biomarkers in the Chilean Pencil Catfish, Trichomycterus areolatus, from the Choapa River Basin, Coquimbo Chile

Ali, J. M., Montecinos, A., Schulze, T. T., Allmon, L. G., Kallenbach, A. T., Watson, G. F., Davis, P. H., Snow, D. D., Bertin, A., Gouin, N. & Kolok, A. S., Jan 1 2020, In : Archives of Environmental Contamination and Toxicology. 78, 1, p. 137-148 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Changes in the community structure of the symbiotic microbes of wild amphibians from the eastern edge of the Tibetan Plateau

Xu, L. L., Chen, H., Zhang, M., Zhu, W., Chang, Q., Lu, G., Chen, Y., Jiang, J. & Zhu, L., Apr 1 2020, In : MicrobiologyOpen. 9, 4, e1004.

Research output: Contribution to journalArticle

Open Access

Evolution and genetics of bighead and silver carps: Native population conservation versus invasive species control

Lu, G., Wang, C., Zhao, J., Liao, X., Wang, J., Luo, M., Zhu, L., Bernatzhez, L. & Li, S., Jul 1 2020, In : Evolutionary Applications. 13, 6, p. 1351-1362 12 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Exploratory behaviour is associated with microhabitat and evolutionary radiation in Lake Malawi cichlids

Johnson, Z. V., Moore, E. C., Wong, R. Y., Godwin, J. R., Streelman, J. T. & Roberts, R. B., Feb 2020, In : Animal Behaviour. 160, p. 121-134 14 p.

Research output: Contribution to journalArticle

Genomes of major fishes in world fisheries and aquaculture: Status, application and perspective

Lu, G. & Luo, M., 2020, (Accepted/In press) In : Aquaculture and Fisheries.

Research output: Contribution to journalReview article

Open Access

Identification of a Splenic Marginal Zone Lymphoma Signature: Preliminary Findings With Diagnostic Potential

Robinson, J. E., Greiner, T. C., Bouska, A. C., Iqbal, J. & Cutucache, C. E., May 8 2020, In : Frontiers in Oncology. 10, 640.

Research output: Contribution to journalArticle

Open Access

Lessons from bamboo-eating pandas and their gut microbiome: Gut microbiome flow and applications

Zhang, Z., Hu, T., Lu, G. & Zhu, L., Apr 1 2020, In : Evolutionary Applications. 13, 4, p. 615-619 5 p.

Research output: Contribution to journalArticle

Open Access

Melanism as a potential thermal benefit in eastern fox squirrels (Sciurus niger)

Ciurej, A. K., Oblander, A., Swift, A. W. & Wilson, J. A., Jan 1 2020, In : European Journal of Ecology. 5, 2, p. 79-87 9 p.

Research output: Contribution to journalArticle

Open Access

Olfactory Dysfunction in Familial and Sporadic Parkinson's Disease

Chase, B. A. & Markopoulou, K., May 29 2020, In : Frontiers in Neurology. 11, 447.

Research output: Contribution to journalReview article

Open Access

Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin

Wang, J., Gaughan, S., Lamer, J. T., Deng, C., Hu, W., Wachholtz, M., Qin, S., Nie, H., Liao, X., Ling, Q., Li, W., Zhu, L., Bernatchez, L., Wang, C. & Lu, G., Feb 1 2020, In : Evolutionary Applications. 13, 2, p. 263-277 15 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Salinity modulates biochemical and histopathological changes caused by silver nanoparticles in juvenile Persian sturgeon (Acipenser persicus)

Banan, A., Kalbassi, M. R., Bahmani, M., Sotoudeh, E., Johari, S. A., Ali, J. M. & Kolok, A. S., Apr 1 2020, In : Environmental Science and Pollution Research. 27, 10, p. 10658-10671 14 p.

Research output: Contribution to journalArticle

Sex bias in gut microbiome transmission in newly paired marmosets (Callithrix jacchus)

Zhu, L., Clayton, J. B., Suhr Van Haute, M. J., Yang, Q., Hassenstab, H. R., Mustoe, A. C., Knights, D., Benson, A. K. & French, J. A., Apr 2020, In : mSystems. 5, 2, e00910-19.

Research output: Contribution to journalArticle

Open Access

Simultaneous Release of Multiple Vesicles from Rods Involves Synaptic Ribbons and Syntaxin 3B

Hays, C. L., Grassmeyer, J. J., Wen, X., Janz, R., Heidelberger, R. & Thoreson, W. B., Feb 25 2020, In : Biophysical journal. 118, 4, p. 967-979 13 p.

Research output: Contribution to journalArticle

1 Scopus citations

Stochastic simulation of cellular metabolism

Clement, E. J., Schulze, T. T., Soliman, G. A., Wysocki, B. J., Davis, P. H. & Wysocki, T. A., 2020, In : IEEE Access. 8, p. 79734-79744 11 p., 9070186.

Research output: Contribution to journalArticle

Open Access

Structure-Activity Relationship of Antischistosomal Ozonide Carboxylic Acids

Wu, J., Wang, X., Chiu, F. C. K., Häberli, C., Shackleford, D. M., Ryan, E., Kamaraj, S., Bulbule, V. J., Wallick, A. I., Dong, Y., White, K. L., Davis, P. H., Charman, S. A., Keiser, J. & Vennerstrom, J. L., Apr 9 2020, In : Journal of Medicinal Chemistry. 63, 7, p. 3723-3736 14 p.

Research output: Contribution to journalArticle

The Changes in the Frog Gut Microbiome and Its Putative Oxygen-Related Phenotypes Accompanying the Development of Gastrointestinal Complexity and Dietary Shift

Zhang, M., Chen, H., Liu, L., Xu, L., Wang, X., Chang, L., Chang, Q., Lu, G., Jiang, J. & Zhu, L., Mar 3 2020, In : Frontiers in Microbiology. 11, 162.

Research output: Contribution to journalArticle

Open Access

Winter Use of a Rock Crevice by Northern Long-Eared Myotis (Myotis septentrionalis) in Nebraska

White, J. A., Freeman, P. W., Otto, H. W. & Lemen, C. A., Apr 2020, In : Western North American Naturalist. 80, 1, p. 114-119 6 p.

Research output: Contribution to journalArticle

2019

Age-related changes in the gut microbiota of the Chinese giant salamander (Andrias davidianus)

Zhang, M., Gaughan, S., Chang, Q., Chen, H., Lu, G., Wang, X., Xu, L., Zhu, L. & Jiang, J., Jul 2019, In : MicrobiologyOpen. 8, 7, e00778.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expression

Ward, T. L., Weber, B. P., Mendoza, K. M., Danzeisen, J. L., Llop, K., Lang, K., Clayton, J. B., Grace, E., Brannon, J., Radovic, I., Beauclaire, M., Heisel, T. J., Knights, D., Cardona, C., Kogut, M., Johnson, C., Noll, S. L., Arsenault, R., Reed, K. M. & Johnson, T. J., 2019, In : mBio. 10, 5, e02171-19.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Are the gut microbial systems of giant pandas unstable?

Yao, R., Yang, Z., Zhang, Z., Hu, T., Chen, H., Huang, F., Gu, X., Yang, X., Lu, G. & Zhu, L., Sep 2019, In : Heliyon. 5, 9, e02480.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Assessing the Accuracy of Citizen Scientist Reported Measurements for Agrichemical Contaminants

Ali, J. M., Noble, B. C., Nandi, I., Kolok, A. S. & Bartelt-Hunt, S. L., May 21 2019, In : Environmental Science and Technology. 53, 10, p. 5633-5640 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus)

Clayton, J. B., Shields-Cutler, R. R., Hoops, S. L., Al-Ghalith, G. A., Sha, J. C. M., Johnson, T. J. & Knights, D., Oct 1 2019, In : American Journal of Primatology. 81, 10-11, e22977.

Research output: Contribution to journalArticle

1 Scopus citations

Barriers to integration of bioinformatics into undergraduate life sciences education: A national study of US life sciences faculty uncover significant barriers to integrating bioinformatics into undergraduate instruction

Williams, J. J., Drew, J. C., Galindo-Gonzalez, S., Robic, S., Dinsdale, E., Morgan, W. R., Triplett, E. W., Burnette, J. M., Donovan, S. S., Fowlks, E. R., Goodman, A. L., Grandgenett, N. F., Goller, C. C., Hauser, C., Jungck, J. R., Newman, J. D., Pearson, W. R., Ryder, E. F., Sierk, M. E., Smith, T. M. & 10 others, Tosado-Acevedo, R., Tapprich, W., Tobin, T. C., Toro-Martinez, A., Welch, L. R., Wilson, M. A., Ebenbach, D., McWilliams, M., Rosenwald, A. G. & Pauley, M. A., 2019, In : PloS one. 14, 11, e0224288.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Body mass as an estimate of female body condition in a hibernating small mammal

Wells, C. P., Wilson, J. A., Kelt, D. A. & van Vuren, D. H., 2019, In : Canadian Field-Naturalist. 133, 1, p. 34-42 9 p.

Research output: Contribution to journalArticle

Open Access

Ca2+ sensor synaptotagmin-1 mediates exocytosis in mammalian photoreceptors

Grassmeyer, J. J., Cahill, A. L., Hays, C. L., Barta, C., Quadros, R. M., Gurumurthy, C. B. & Thoreson, W. B., Jun 2019, In : eLife. 8, e45946.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive non-human primate zoological collection

Clayton, J. B., Danzeisen, J. L., Johnson, T. J., Trent, A. M., Hayer, S. S., Murphy, T., Wuenschmann, A., Elder, M., Shen, Z., Mannion, A., Bryant, E., Knights, D. & Fox, J. G., Apr 2019, In : Journal of medical primatology. 48, 2, p. 114-122 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Comparative skin transcriptome of two Oujiang color common carp (Cyprinus carpio var. color) varieties

Du, J., Chen, X., Wang, J., Chen, H., Yue, W., Lu, G. & Wang, C., Feb 15 2019, In : Fish Physiology and Biochemistry. 45, 1, p. 177-185 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Contextual fear learning and memory differ between stress coping styles in zebrafish

Baker, M. R. & Wong, R. Y., Dec 1 2019, In : Scientific reports. 9, 1, 9935.

Research output: Contribution to journalArticle

Open Access
Open Access

Differences in stress reactivity between zebrafish with alternative stress coping styles

Wong, R. Y., French, J. & Russ, J. B., May 1 2019, In : Royal Society Open Science. 6, 5, 181797.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Differential gene expression in chronic wasting disease-positive white-tailed deer (Odocoileus virginianus)

Trone-Launer, E. K., Wang, J., Lu, G., Mateus-Pinilla, N. E., Zick, P. R., Lamer, J. T., Shelton, P. A. & Jacques, C. N., Nov 1 2019, In : Ecology and Evolution. 9, 22, p. 12600-12612 13 p.

Research output: Contribution to journalArticle

Open Access

Diverse cell types, circuits, and mechanisms for color vision in the vertebrate retina

Thoreson, W. B. & Dacey, D. M., Jul 2019, In : Physiological Reviews. 99, 3, p. 1527-1573 47 p.

Research output: Contribution to journalArticle

7 Scopus citations

Effects of 34 Years of Experimentally Manipulated Burn Seasons and Frequencies on Prairie Plant Composition

Dickson, T. L., Hayes, B. A. & Bragg, T. B., Jan 2019, In : Rangeland Ecology and Management. 72, 1, p. 82-91 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

Evaluating Citizen Scientists’ User Experience and Engagement Using a Mobile Watershed Data Management App

Fruhling, A., Bartelt-Hunt, S. L. & Kolok, A., 2019, HCI International 2019 – Late Breaking Papers - 21st HCI International Conference, HCII 2019, Proceedings. Stephanidis, C. (ed.). Springer Verlag, p. 541-554 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11786 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
1 Scopus citations

Habitat use and population structure of the shoal chub (Macrhybopsis hyostoma) in the upper Mississippi River basin

Gaughan, S., Steffensen, K. & Lu, G., Jun 15 2019, In : Environmental Biology of Fishes. 102, 6, p. 901-914 14 p.

Research output: Contribution to journalArticle

Local habitat, not phylogenetic relatedness, predicts gut microbiota better within folivorous than frugivorous lemur lineages

Greene, L. K., Clayton, J. B., Rothman, R. S., Semel, B. P., Semel, M. A., Gillespie, T. R., Wright, P. C. & Drea, C. M., Jun 1 2019, In : Biology Letters. 15, 6, 20190028.

Research output: Contribution to journalArticle

4 Scopus citations

Nutrient-based diet modifications impact on the gut microbiome of the Javan slow loris (Nycticebus javanicus)

Cabana, F., Clayton, J. B., Nekaris, K. A. I., Wirdateti, W., Knights, D. & Seedorf, H., Dec 1 2019, In : Scientific reports. 9, 1, 4078.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Pesticide contamination drives adaptive genetic variation in the endemic mayfly Andesiops torrens within a semi-arid agricultural watershed of Chile

Gouin, N., Bertin, A., Espinosa, M. I., Snow, D. D., Ali, J. M. & Kolok, A. S., Dec 2019, In : Environmental Pollution. 255, 113099.

Research output: Contribution to journalArticle

Preface

Singh, R. P., Kolok, A. S. & Bartelt-Hunt, S. L., Mar 9 2019, Water Conservation, Recycling and Reuse: Issues and Challenges. Springer Singapore, p. ix-xi

Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

Preface

Singh, R. P., Kolok, A. S. & Bartelt-Hunt, S. L., Mar 9 2019, Water Conservation, Recycling and Reuse: Issues and Challenges. Springer Singapore, p. ix-xi

Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

7 Scopus citations

Sélection d'habitat après l'envol et survie chez le bruant de Henslow: Répercussions sur l'aménagement à un stade critique du cycle vital

Translated title of the contribution: Postfledging habitat selection and survival of Henslow’s Sparrow: Management implications for a critical life stageYoung, A. C., Andrew Cox, W., McCarty, J. P. & Lareesa Wolfenbarger, L., Dec 2019, In : Avian Conservation and Ecology. 14, 2, 10.

Research output: Contribution to journalArticle

Open Access

Structure of the 5= untranslated region of enteroviral genomic RNA

Mahmud, B., Horn, C. M. & Tapprich, W. E., Dec 1 2019, In : Journal of virology. 9, 23, e01288-19.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Systematic review and meta-analysis of variation in Toxoplasma gondii cyst burden in the murine model

Watson, G. F. & Davis, P. H., Jan 2019, In : Experimental Parasitology. 196, p. 55-62 8 p.

Research output: Contribution to journalShort survey

2 Scopus citations