Biomedical Informatics

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  • 2021

    An Brief Examination of Case Studies in Reproducibility for Bioinformatics Training

    Alsafwani, Z. & Cooper, K., 2021, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Huang, Y., Kurgan, L., Luo, F., Hu, X. T., Chen, Y., Dougherty, E., Kloczkowski, A. & Li, Y. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1641-1642 2 p. (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • A New Approach for Analyzing Safety and Performance Factors in Civil Infrastructures Using Correlation Networks and Population Analysis

    Chetti, P., Ali, H. H., Ghersi, D., Ghandi, R. A., Ricks, B. & Najjar, L., 2021, Structural Health Monitoring 2021: Enabling Next-Generation SHM for Cyber-Physical Systems - Proceedings of the 13th International Workshop on Structural Health Monitoring, IWSHM 2021. Farhangdoust, S., Guemes, A. & Chang, F.-K. (eds.). DEStech Publications Inc., p. 593-600 8 p. (Structural Health Monitoring 2021: Enabling Next-Generation SHM for Cyber-Physical Systems - Proceedings of the 13th International Workshop on Structural Health Monitoring, IWSHM 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research

    Gasper, W., Ma, J., Ghersi, D., Gnimpieba, E. Z., Gadhamshetty, V. & Chundi, P., 2021, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Huang, Y., Kurgan, L., Luo, F., Hu, X. T., Chen, Y., Dougherty, E., Kloczkowski, A. & Li, Y. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 3570-3577 8 p. (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Parallel Planar Approximation for Large Networks

    Gasper, W., Cooper, K., Cornelius, N. & Ali, H., 2021, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Huang, Y., Kurgan, L., Luo, F., Hu, X. T., Chen, Y., Dougherty, E., Kloczkowski, A. & Li, Y. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1948-1955 8 p. (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Pilot Research on Improving Consumer Health Literacy in Food Labels by Measuring the Prevalence Occurrence of Similar Ingredients

    Lele, S. & Cooper, K., 2021, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Huang, Y., Kurgan, L., Luo, F., Hu, X. T., Chen, Y., Dougherty, E., Kloczkowski, A. & Li, Y. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1664-1666 3 p. (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations
  • 2020

    Characterization of S. cerevisiae Protein Complexes by Representative DDI Graph Planarity

    Gasper, W., Cooper, K., Cornelius, N., Ali, H. & Bhowmick, S., Sep 21 2020, Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2020. Association for Computing Machinery, Inc, (Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • MeSH Indexing Using the Biomedical Citation Network

    Gasper, W., Chundi, P. & Ghersi, D., Sep 21 2020, Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2020. Association for Computing Machinery, Inc, (Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    4 Scopus citations

  • On the planarity of validated complexes of model organisms in protein-protein interaction networks

    Cooper, K., Cornelius, N., Gasper, W., Bhowmick, S. & Ali, H., 2020, Computational Science – ICCS 2020 - 20th International Conference, Proceedings. Krzhizhanovskaya, V. V., Závodszky, G., Lees, M. H., Sloot, P. M. A., Sloot, P. M. A., Sloot, P. M. A., Dongarra, J. J., Brissos, S. & Teixeira, J. (eds.). Springer Science and Business Media Deutschland GmbH, p. 652-666 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12137 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
  • 2019

    Identifying Structural Changes in Correlation Networks Models of Cancer Gene Expression by Stage

    Li, Q., Ghersi, D., Thapa, I., Zhang, L., Ali, H. & Cooper, K., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2075-2082 8 p. 8983069. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Network Analysis of Antibiotic Resistance Identifies Compelling Mutations across Pathways

    Ameri, K. & Cooper, K., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 188-192 5 p. 8983099. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations
  • 2017

    A compartmental network model for the spread of whooping cough

    Ameri, H. & Cooper, K., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2224-2225 2 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Analysis of structural measurements in correlation networks built from gene expression data across different tissue types in Mus musculus

    Li, Q. & Cooper, K., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1716-1722 7 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Analyzing T cell receptor alpha/beta usage in binding to the pMHC

    Ehrlich, R. & Ghersi, D., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 83-87 5 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • A network-based approach to mine temporal genes exhibiting significant expression variation in Caenorhabditis elegans

    Cooper, K., Hassan, W. & Ali, H., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2151-2156 6 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • A systems biology approach for modeling microbiomes using split graphs

    Kim, S., Thapa, I., Lu, G., Zhu, L. & Ali, H. H., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2062-2068 7 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Bioinformatics for middle school aged children: Activities for exposure to an interdisciplinary field

    Cooper, K., McGraw, A. & Khazanchi, D., Apr 24 2017, ISEC 2017 - Proceedings of the 7th IEEE Integrated STEM Education Conference. Institute of Electrical and Electronics Engineers Inc., p. 1-9 9 p. 7910217. (ISEC 2017 - Proceedings of the 7th IEEE Integrated STEM Education Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Correlation networks: Biologically driven relationships from gene expression data

    Huff, G. W. & Cooper, K., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1712-1715 4 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • In-silico analysis of the 'memory anti-Naïve' effect in anti-viral cross-reactive responses

    Castiglione, F., Ghersi, D. & Celada, F., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1433-1437 5 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2016

    Recovering bound forms of Protein structures using the Elastic Network Model and Molecular Interaction Fields

    Ghersi, D. & Sanchez, R., Oct 2 2016, ACM-BCB 2016 - 7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 50-57 8 p. (ACM-BCB 2016 - 7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2015

    A novel approach to identify shared fragments in drugs and natural products

    Balasubramanya, A., Thapa, I., Bastola, D. & Ghersi, D., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 575-580 6 p. 7359746. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Evaluating the robustness of correlation network analysis in the aging mouse hypothalamus

    Cooper, K. M., Bonasera, S. & Ali, H., 2015, Biomedical Engineering Systems and Technologies - 8th International Joint Conference, BIOSTEC 2015, Revised Selected Papers. Elias, D., Fred, A. & Gamboa, H. (eds.). Springer Verlag, p. 224-238 15 p. (Communications in Computer and Information Science; vol. 574).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Identification of biologically significant elements using correlation networks in high performance computing environments

    Cooper, K. D., Pawaskar, S. & Ali, H. H., 2015, Bioinformatics and Biomedical Engineering - 3rd International Conference, IWBBIO 2015, Proceedings. Ortuño, F. & Rojas, I. (eds.). Springer Verlag, p. 607-619 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9044).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Identifying aging genes in the aging mouse hypothalamus using gateway node analysis of correlation networks

    Cooper, K. M., Bonasera, S. & Ali, H., 2015, BIOINFORMATICS 2015 - 6th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2015. Pastor, O., Sinoquet, C., Fred, A., Gamboa, H. & Elias, D. (eds.). SciTePress, p. 36-43 8 p. (BIOINFORMATICS 2015 - 6th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • On the comparison of state-and transition-based analysis of biological relevance in gene co-expression networks

    Cooper, K., Vemuri, P. & Ali, H., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1197-1203 7 p. 7359852. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2014

    On the robustness of the biological correlation network model

    Dempsey, K. M. & Ali, H. H., 2014, BIOINFORMATICS 2014 - 5th Int. Conf. on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 7th Int. Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2014. SciTePress, p. 186-195 10 p. (BIOINFORMATICS 2014 - 5th Int. Conf. on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 7th Int. Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    3 Scopus citations

  • Recognizing patient safety importance through instrument validation on physicians' assessment of an EHR

    Noteboom, C., Dempsey, K. & Fruhling, A., 2014, Proceedings of the 47th Annual Hawaii International Conference on System Sciences, HICSS 2014. IEEE Computer Society, p. 2828-2837 10 p. 6758954. (Proceedings of the Annual Hawaii International Conference on System Sciences).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations
  • 2013

    Analysis of incrementally generated clusters in biological networks using graph-theoretic filters and ontology enrichment

    West, S., Dempsey, K., Bhowmick, S. & Ali, H., 2013, Proceedings - IEEE 13th International Conference on Data Mining Workshops, ICDMW 2013. IEEE Computer Society, p. 584-591 8 p. 6753973

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • A structure-preserving hybrid-chordal filter for sampling in correlation networks

    Dempsey, K., Chen, T. Y., Srinivasan, S., Bhowmick, S. & Ali, H., 2013, Proceedings of the 2013 International Conference on High Performance Computing and Simulation, HPCS 2013. p. 243-250 8 p. 6641422. (Proceedings of the 2013 International Conference on High Performance Computing and Simulation, HPCS 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Identifying pathway proteins in networks using convergence

    Dempsey, K. & Ali, H., 2013, 2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013. p. 853-860 8 p. (2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • On identifying and analyzing significant nodes in protein-protein interaction networks

    Khazanchi, R., Dempsey, K., Thapa, I. & Ali, H., 2013, Proceedings - IEEE 13th International Conference on Data Mining Workshops, ICDMW 2013. IEEE Computer Society, p. 343-348 6 p. 6753940

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • On mining biological signals using correlation networks

    Dempsey, K., Thapa, I., Cortes, C., Eriksen, Z., Bastola, D. K. & Ali, H., 2013, Proceedings - IEEE 13th International Conference on Data Mining Workshops, ICDMW 2013. IEEE Computer Society, p. 327-334 8 p. 6753938

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    6 Scopus citations
  • 2012

    A novel multithreaded algorithm for extracting maximal chordal subgraphs

    Halappanavar, M., Feo, J., Dempsey, K., Ali, H. & Bhowmick, S., 2012, Proceedings - 41st International Conference on Parallel Processing, ICPP 2012. p. 58-67 10 p. 6337567. (Proceedings of the International Conference on Parallel Processing).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Function-preserving filters for sampling in biological networks

    Dempsey, K., Bhowmick, S. & Ali, H., 2012, Procedia Computer Science. Elsevier, Vol. 9. p. 587-595 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    7 Scopus citations

  • On the design of advanced filters for biological networks using graph theoretic properties

    Dempsey, K., Chen, T. Y., Bhowmick, S. & Ali, H., 2012, Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2012. p. 556-560 5 p. 6392617. (Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • The development of parallel adaptive sampling algorithms for analyzing biological networks

    Dempsey, K., Duraisamy, K., Bhowmick, S. & Ali, H., 2012, Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2012. p. 725-734 10 p. 6270712. (Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    7 Scopus citations
  • 2011

    A noise reducing sampling approach for uncovering critical properties in large scale biological networks

    Duraisamy, K., Dempsey, K., Ali, H. & Bhowmick, S., 2011, Proceedings of the 2011 International Conference on High Performance Computing and Simulation, HPCS 2011. p. 721-728 8 p. 5999898. (Proceedings of the 2011 International Conference on High Performance Computing and Simulation, HPCS 2011).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    13 Scopus citations

  • A parallel graph sampling algorithm for analyzing gene correlation networks

    Dempsey, K., Duraisamy, K., Ali, H. & Bhowmick, S., 2011, Procedia Computer Science. Vol. 4. p. 136-145 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    17 Scopus citations

  • Evaluation of essential genes in correlation networks using measures of centrality

    Dempsey, K. & Ali, H., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 509-515 7 p. 6112421. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    9 Scopus citations

  • Identifying modular function via edge annotation in gene correlation networks using Gene Ontology search

    Dempsey, K., Thapa, I., Bastola, D. & Ali, H., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 255-261 7 p. 6112384. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    6 Scopus citations
  • 2010

    An intelligent data-centric approach toward identification of conserved motifs in protein sequences

    Dempsey, K., Currall, B., Hallworth, R. & Ali, H., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 398-401 4 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Applying neural networks to classify influenza virus antigenic types and hosts

    Attaluri, P. K., Chen, Z. & Lu, G., 2010, 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010. p. 279-284 6 p. 5510726. (2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    17 Scopus citations

  • Sequence comparison using multi-order Markov chains

    Fang, X., Lu, G. & Zhang, S., 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010. 5515258. (2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2009

    Integrating decision tree and hidden markov model (hmm) for subtype prediction of human influenza a virus

    Attaluri, P. K., Chen, Z., Weerakoon, A. M. & Lu, G., 2009, Cutting-Edge Research Topics on Multiple Criteria Decision Making: 20th International Conference, MCDM 2009, Chengdu/Jiuzhaigou, Proceedings. Springer Verlag, p. 52-58 7 p. (Communications in Computer and Information Science; vol. 35).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    9 Scopus citations
  • 2008

    A parallel architecture for regulatory motif algorithm assessment

    Quest, D., Dempsey, K., Shafiullah, M., Bastola, D. & Ali, H., 2008, IPDPS Miami 2008 - Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium, Program and CD-ROM. 4536178. (IPDPS Miami 2008 - Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium, Program and CD-ROM).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    2 Scopus citations
  • 2007

    AffyMiner - A tool for significant gene mining in affymetrix GeneChip microarray data

    Lu, G., Nguyen, T., Xia, Y., Wang, Z. & Fromm, M., 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. 4076628. (Proceedings of the Annual Hawaii International Conference on System Sciences).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Influenza A virus informatics: Genotype-centered database and genotype annotation

    Lu, G., Buyyani, K., Goty, N., Donis, R. & Chen, Z., 2007, Proceedings - 2nd International Multi-Symposiums on Computer and Computational Sciences, IMSCCS'07. p. 76-83 8 p. 4392583. (Proceedings - 2nd International Multi-Symposiums on Computer and Computational Sciences, IMSCCS'07).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    6 Scopus citations

  • Modeling miRNA data

    Lopez, S., Lu, G. & Chen, Z., 2007, Proceedings of the 2007 ACM Symposium on Applied Computing. Association for Computing Machinery, p. 158-162 5 p. (Proceedings of the ACM Symposium on Applied Computing).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2006

    GenomeBlast: A Web tool for small genome comparison

    Lu, G., Jiang, L., Kotalik, R. M., Rowley, T. W., Zhang, L., Chen, X. & Moriyama, E. N., 2006, First International Multi- Symposiums on Computer and Computational Sciences, IMSCCS'06. p. 136-141 6 p. 1636030. (First International Multi- Symposiums on Computer and Computational Sciences, IMSCCS'06; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2003

    A new approach for gene annotation using unambiguous sequence joining

    Tchourbanov, A., Quest, D., Ali, H., Pauley, M. & Norgren, R., 2003, Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003. Institute of Electrical and Electronics Engineers Inc., p. 353-362 10 p. 1227336. (Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations