Research Output

2020

An evidence for surface expression of an immunogenic epitope of sarcoplasmic/endoplasmic reticulum calcium-ATPase2a on antigen-presenting cells from naive mice in the mediation of autoimmune myocarditis

Arumugam, R., Yalaka, B., Massilamany, C., Haider Ali, M. S. S., Lasrado, N., Jayaraja, S., Riethoven, J. J., Sun, X. & Reddy, J., Mar 2020, In : Immunobiology. 225, 2, 151896.

Research output: Contribution to journalArticle

Endohyphal bacteria associated with virulence, increased expression of fumonisin biosynthetic genes, and production of fumonisin and macroconidia in Fusarium fujikuroi W343

Obasa, K., Adesemoye, A., Obasa, R., Moraga-Amador, D., Shinogle, H., Alvarez, S. & Kelley, K., Jan 1 2020, In : Plant Pathology. 69, 1, p. 87-100 14 p.

Research output: Contribution to journalArticle

Nonsynonymous mutations in linker-2 of the PDR5 multidrug transporter identify a new RNA stability element

Rahman, H., Rudrow, A., Carneglia, J., Patrick Joly, S. S., Nicotera, D., Naldrett, M., Choy, J., Ambudkar, S. V. & Golin, J., Jan 1 2020, In : G3: Genes, Genomes, Genetics. 10, 1, p. 357-369 13 p.

Research output: Contribution to journalArticle

Open Access
2019

Brassicaceae-specific Gretchen Hagen 3 acyl acid amido synthetases conjugate amino acids to chorismate, a precursor of aromatic amino acids and salicylic acid

Holland, C. K., Westfall, C. S., Schaffer, J. E., De Santiago, A., Zubieta, C., Alvarez, S. & Jez, J. M., Nov 8 2019, In : Journal of Biological Chemistry. 294, 45, p. 16855-16864 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome

Lagundžin, D., Hu, W. F., Law, H. C. H., Krieger, K. L., Qiao, F., Clement, E. J., Drincic, A. T., Nedić, O., Naldrett, M. J., Alvarez, S. & Woods, N. T., Jan 1 2019, In : PloS one. 14, 8, e0220568.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Glucose signaling is connected to chromosome segregation through protein kinase a phosphorylation of the dam1 kinetochore subunit in saccharomyces cerevisiae

Shah, S. B., Parmiter, D., Constantine, C., Elizalde, P., Naldrett, M., Karpova, T. S. & Choy, J. S., Feb 1 2019, In : Genetics. 211, 2, p. 531-547 17 p.

Research output: Contribution to journalArticle

LncRNA Meg3 protects endothelial function by regulating the DNA damage response

Ali, M. S. S. H., Cheng, X., Moran, M., Haemmig, S., Naldrett, M. J., Alvarez, S., Feinberg, M. W. & Sun, X., Jan 1 2019, In : Nucleic acids research. 47, 3

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Regional Molecular Mapping of Primate Synapses during Normal Healthy Aging

Graham, L. C., Naldrett, M. J., Kohama, S. G., Smith, C., Lamont, D. J., McColl, B. W., Gillingwater, T. H., Skehel, P., Urbanski, H. F. & Wishart, T. M., Apr 23 2019, In : Cell Reports. 27, 4, p. 1018-1026.e4

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

The role of alcohol-induced Golgi fragmentation for androgen receptor signaling in prostate cancer

Manca, S., Frisbie, C. P., LaGrange, C. A., Casey, C. A., Riethoven, J. J. M. & Petrosyan, A., Jan 1 2019, In : Molecular Cancer Research. 17, 1, p. 225-237 13 p.

Research output: Contribution to journalArticle

3 Scopus citations

The Small RNA Teg41 Regulates Expression of the Alpha Phenol-Soluble Modulins and Is Required for Virulence in Staphylococcus aureus

Zapf, R. L., Wiemels, R. E., Keogh, R. A., Holzschu, D. L., Howell, K. M., Trzeciak, E., Caillet, A. R., King, K. A., Selhorst, S. A., Naldrett, M. J., Bose, J. L. & Carroll, R. K., Feb 5 2019, In : mBio. 10, 1

Research output: Contribution to journalArticle

Open Access
5 Scopus citations
2018

Arabidopsis thaliana GH3.15 acyl acid amido synthetase has a highly specific substrate preference for the auxin precursor indole-3-butyric acid

Sherp, A. M., Westfall, C. S., Alvarez, S. & Jez, J. M., Mar 23 2018, In : Journal of Biological Chemistry. 293, 12, p. 4277-4288 12 p.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Epitope Mapping of SERCA2a Identifies an Antigenic Determinant That Induces Mainly Atrial Myocarditis in A/J Mice

Krishnan, B., Massilamany, C., Basavalingappa, R. H., Gangaplara, A., Rajasekaran, R. A., Afzal, M. Z., Khalilzad-Sharghi, V., Zhou, Y., Riethoven, J. J., Nandi, S. S., Mishra, P. K., Sobel, R. A., Strande, J. L., Steffen, D. & Reddy, J., Jan 15 2018, In : Journal of Immunology. 200, 2, p. 523-537 15 p.

Research output: Contribution to journalArticle

1 Scopus citations

Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)

Hovde, B. T., Hanschen, E. R., Steadman Tyler, C. R., Lo, C. C., Kunde, Y., Davenport, K., Daligault, H., Msanne, J., Canny, S., Eyun, S. I., Riethoven, J. J. M., Polle, J. & Starkenburg, S. R., Nov 2018, In : Algal Research. 35, p. 449-461 13 p.

Research output: Contribution to journalArticle

4 Scopus citations

MEPicides: α,β-Unsaturated Fosmidomycin Analogues as DXR Inhibitors against Malaria

Wang, X., Edwards, R. L., Ball, H., Johnson, C., Haymond, A., Girma, M., Manikkam, M., Brothers, R. C., McKay, K. T., Arnett, S. D., Osbourn, D. M., Alvarez, S., Boshoff, H. I., Meyers, M. J., Couch, R. D., Odom John, A. R. & Dowd, C. S., Oct 11 2018, In : Journal of Medicinal Chemistry. 61, 19, p. 8847-8858 12 p.

Research output: Contribution to journalArticle

7 Scopus citations
8 Scopus citations
2017

Branched chain α-ketoacid dehydrogenase kinase 111-130, a T cell epitope that induces both autoimmune myocarditis and hepatitis in A/J mice

Krishnan, B., Massilamany, C., Basavalingappa, R. H., Gangaplara, A., Kang, G., Li, Q., Uzal, F. A., Strande, J. L., Delhon, G. A., Riethoven, J. J., Steffen, D. & Reddy, J., Jan 1 2017, In : Immunity Inflammation and Disease. 5, 4, p. 421-434 14 p.

Research output: Contribution to journalArticle

4 Scopus citations

Genomics Symposium: Using genomic approaches to uncover sources of variation in age at puberty and reproductive longevity in sows

Wijesena, H. R., Lents, C. A., Riethoven, J. J., Trenhaile-Grannemann, M. D., Thorson, J. F., Keel, B. N., Miller, P. S., Spangler, M. L., Kachman, S. D. & Ciobanu, D. C., Sep 2017, In : Journal of animal science. 95, 9, p. 4196-4205 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

β1-adrenergic receptor contains multiple IAk and IEk binding epitopes that induce T cell responses with varying degrees of autoimmune myocarditis in A/J mice

Basavalingappa, R. H., Massilamany, C., Krishnan, B., Gangaplara, A., Rajasekaran, R. A., Afzal, M. Z., Riethoven, J. J., Strande, J. L., Steffen, D. & Reddy, J., Nov 20 2017, In : Frontiers in immunology. 8, NOV, 1567.

Research output: Contribution to journalArticle

2 Scopus citations
2016

Arabidopsis thaliana GH3.5 acyl acid amido synthetase mediates metabolic crosstalk in auxin and salicylic acid homeostasis

Westfall, C. S., Sherp, A. M., Zubieta, C., Alvarez, S., Schraft, E., Marcellin, R., Ramirez, L. & Jez, J. M., Nov 29 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 48, p. 13917-13922 6 p.

Research output: Contribution to journalArticle

Open Access
40 Scopus citations
Open Access
6 Scopus citations

Identification of an Epitope from Adenine Nucleotide Translocator 1 That Induces Inflammation in Heart in A/J Mice

Basavalingappa, R. H., Massilamany, C., Krishnan, B., Gangaplara, A., Kang, G., Khalilzad-Sharghi, V., Han, Z., Othman, S., Li, Q., Riethoven, J. J., Sobel, R. A., Steffen, D. & Reddy, J., Dec 1 2016, In : American Journal of Pathology. 186, 12, p. 3160-3175 16 p.

Research output: Contribution to journalArticle

5 Scopus citations

Identification of evening complex associated proteins in arabidopsis by affinity purification and mass spectrometry

Huang, H., Alvarez, S., Bindbeutel, R., Shen, Z., Naldrett, M. J., Evans, B. S., Briggs, S. P., Hicks, L. M., Kay, S. A. & Nusinow, D. A., Jan 2016, In : Molecular and Cellular Proteomics. 15, 1, p. 201-217 17 p.

Research output: Contribution to journalArticle

Open Access
60 Scopus citations

PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis

Huang, H., Yoo, C. Y., Bindbeutel, R., Goldsworthy, J., Tielking, A., Alvarez, S., Naldrett, M. J., Evans, B. S., Chen, M. & Nusinow, D. A., Feb 3 2016, In : eLife. 5, FEBRUARY2016, e13292.

Research output: Contribution to journalArticle

Open Access
33 Scopus citations

Plant structure and specificity – Challenges and sample preparation considerations for proteomics

Alvarez, S. & Naldrett, M. J., Jan 1 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 63-81 19 p. (Advances in Experimental Medicine and Biology; vol. 919).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

The dehydratase ADT3 affects ROS homeostasis and cotyledon development

Para, A., Muhammad, D. S., Orozco-Nunnelly, D. A., Memishi, R., Alvarez, S., Naldrett, M. J. & Warpeha, K. M., Oct 2016, In : Plant physiology. 172, 2, p. 1045-1060 16 p.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations
2015

Arabidopsis MSH1 mutation alters the epigenome and produces heritable changes in plant growth

Virdi, K. S., Laurie, J. D., Xu, Y. Z., Yu, J., Shao, M. R., Sanchez, R., Kundariya, H., Wang, D., Riethoven, J. J. M., Wamboldt, Y., Arrieta-Montiel, M. P., Shedge, V. & Mackenzie, S. A., Feb 27 2015, In : Nature communications. 6, 6386.

Research output: Contribution to journalArticle

46 Scopus citations

Multiplexing strategy for simultaneous detection of redox-, phospho- and total proteome-understanding TOR regulating pathways in Chlamydomonas reinhardtii

Rodrigues, S. P., Alvarez, S., Werth, E. G., Slade, W. O., Gau, B., Cahoon, E. B. & Hicks, L. M., Sep 7 2015, In : Analytical Methods. 7, 17, p. 7336-7344 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

Mutations in the 5' NTR and the non-structural protein 3A of the coxsackievirus B3 selectively attenuate myocarditogenicity

Massilamany, C., Gangaplara, A., Basavalingappa, R. H., Rajasekaran, R. A., Vu, H., Riethoven, J. J., Steffen, D., Pattnaik, A. K. & Reddy, J., Jun 22 2015, In : PloS one. 10, 6, e0131052.

Research output: Contribution to journalArticle

4 Scopus citations
33 Scopus citations

Overaccumulation of γ-glutamylcysteine in a jasmonate-hypersensitive arabidopsis mutant causes jasmonate-dependent growth inhibition

Wei, H. H., Rowe, M., Riethoven, J. J. M., Grove, R., Adamec, J., Jikumaru, Y. & Staswick, P., Sep 2015, In : Plant physiology. 169, 2, p. 1371-1381 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Polyglycine hydrolases: Fungal β-lactamase-like endoproteases that cleave polyglycine regions within plant class IV chitinases

Naumann, T. A., Naldrett, M. J., Ward, T. J. & Price, N. P. J., Jul 1 2015, In : Protein Science. 24, 7, p. 1147-1157 11 p.

Research output: Contribution to journalArticle

7 Scopus citations

Quantifying reversible oxidation of protein thiols in photosynthetic organisms

Slade, W. O., Werth, E. G., McConnell, E. W., Alvarez, S. & Hicks, L. M., Apr 2015, In : Journal of the American Society for Mass Spectrometry. 26, 4, p. 631-640 10 p.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Quantitative proteomics analysis of camelina sativa seeds overexpressing the AGG3 gene to identify the proteomic basis of increased yield and stress tolerance

Alvarez, S., Roy Choudhury, S., Sivagnanam, K., Hicks, L. M. & Pandey, S., Jun 5 2015, In : Journal of proteome research. 14, 6, p. 2606-2616 11 p.

Research output: Contribution to journalArticle

10 Scopus citations
2014
50 Scopus citations

Contrasting metabolism in perenniating structures of upland and lowland switchgrass plants late in the growing season

Palmer, N. A., Saathoff, A. J., Tobias, C. M., Twigg, P., Xia, Y., Vogel, K. P., Madhavan, S., Sattler, S. E. & Sarath, G., Aug 18 2014, In : PloS one. 9, 8, e105138.

Research output: Contribution to journalArticle

15 Scopus citations

Deep RNA sequencing reveals hidden features and dynamics of early gene transcription in Paramecium bursaria chlorella virus 1

Blanc, G., Mozar, M., Agarkova, I. V., Gurnon, J. R., Yanai-Balser, G., Rowe, J. M., Xia, Y., Riethoven, J. J., Dunigan, D. D. & Van Etten, J. L., Mar 7 2014, In : PloS one. 9, 3, e90989.

Research output: Contribution to journalArticle

17 Scopus citations

Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana

Ding, Y., Virlouvet, L., Liu, N., Riethoven, J. J., Fromm, M. & Avramova, Z., May 22 2014, In : BMC plant biology. 14, 1, 141.

Research output: Contribution to journalArticle

39 Scopus citations

De novo transcriptome assembly from fat body and flight muscles transcripts to identify morph-specific gene expression profiles in Gryllus firmus

Vellichirammal, N. N., Zera, A. J., Schilder, R. J., Wehrkamp, C., Riethoven, J. J. M. & Brisson, J. A., Jan 8 2014, In : PloS one. 9, 1, e82129.

Research output: Contribution to journalArticle

27 Scopus citations

Direct staining with major histocompatibility complex class II dextramers permits detection of antigen-specific, autoreactive CD4 T cells in situ

Massilamany, C., Gangaplara, A., Jia, T., Elowsky, C., Kang, G., Riethoven, J. J., Li, Q., Zhou, Y. & Reddy, J., Jan 27 2014, In : PloS one. 9, 1, e87519.

Research output: Contribution to journalArticle

12 Scopus citations
9 Scopus citations

Effects of chitosan on the protein profile of grape cell culture subcellular fractions

Ferri, M., Franceschetti, M., Naldrett, M. J., Saalbach, G. & Tassoni, A., Jun 2014, In : ELECTROPHORESIS. 35, 11, p. 1685-1692 8 p.

Research output: Contribution to journalArticle

5 Scopus citations

Global analysis of Chlorella variabilis NC64A mRNA profiles during the early phase of Paramecium bursaria chlorella virus-1 infection

Rowe, J. M., Jeanniard, A., Gurnon, J. R., Xia, Y., Dunigan, D. D., Van Etten, J. L. & Blanc, G., Mar 7 2014, In : PloS one. 9, 3, e90988.

Research output: Contribution to journalArticle

10 Scopus citations
2013

Characterization of genome-wide transcriptional changes in liver and adipose tissues of ZDF (fa/fa) rats fed R-α-lipoic acid by next-generation sequencing

Pashaj, A., Yi, X., Xia, M., Canny, S., Riethoven, J. J. M. & Moreau, R., Dec 1 2013, In : Physiological genomics. 45, 23, p. 1136-1143 8 p.

Research output: Contribution to journalArticle

14 Scopus citations

Deletion of Lipoprotein PG0717 in Porphyromonas gingivalis W83 Reduces Gingipain Activity and Alters Trafficking in and Response by Host Cells

Reyes, L., Eiler-McManis, E., Rodrigues, P. H., Chadda, A. S., Wallet, S. M., Bélanger, M., Barrett, A. G., Alvarez, S., Akin, D., Dunn, W. A. & Progulske-Fox, A., Sep 12 2013, In : PloS one. 8, 9, e74230.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Determination of phosphorylation sites in the DivIVA cytoskeletal protein of Streptomyces coelicolor by targeted LC-MS/MS

Saalbach, G., Hempel, A. M., Vigouroux, M., Flärdh, K., Buttner, M. J. & Naldrett, M. J., Sep 6 2013, In : Journal of proteome research. 12, 9, p. 4187-4192 6 p.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

Evaluation of higher plant virus resistance genes in the green alga, Chlorella variabilis NC64A, during the early phase of infection with Paramecium bursaria chlorella virus-1

Rowe, J. M., Dunigan, D. D., Blanc, G., Gurnon, J. R., Xia, Y. & Van Etten, J. L., Aug 1 2013, In : Virology. 442, 2, p. 101-113 13 p.

Research output: Contribution to journalArticle

9 Scopus citations

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

Ding, Y., Liu, N., Virlouvet, L., Riethoven, J. J., Fromm, M. & Avramova, Z., Dec 30 2013, In : BMC plant biology. 13, 1, 229.

Research output: Contribution to journalArticle

96 Scopus citations

Proteome analysis of the fathead minnow (Pimephales promelas) reproductive testes

Martyniuk, C. J. & Alvarez, S., Feb 1 2013, In : Journal of Proteomics. 79, p. 28-42 15 p.

Research output: Contribution to journalArticle

11 Scopus citations

Proteome-wide quantification and characterization of oxidation-sensitive cysteines in pathogenic bacteria

Deng, X., Weerapana, E., Ulanovskaya, O., Sun, F., Liang, H., Ji, Q., Ye, Y., Fu, Y., Zhou, L., Li, J., Zhang, H., Wang, C., Alvarez, S., Hicks, L. M., Lan, L., Wu, M., Cravatt, B. F. & He, C., Mar 13 2013, In : Cell Host and Microbe. 13, 3, p. 358-370 13 p.

Research output: Contribution to journalArticle

Open Access
64 Scopus citations