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2020

An evidence for surface expression of an immunogenic epitope of sarcoplasmic/endoplasmic reticulum calcium-ATPase2a on antigen-presenting cells from naive mice in the mediation of autoimmune myocarditis

Arumugam, R., Yalaka, B., Massilamany, C., Haider Ali, M. S. S., Lasrado, N., Jayaraja, S., Riethoven, J. J., Sun, X. & Reddy, J., Mar 2020, In : Immunobiology. 225, 2, 151896.

Research output: Contribution to journalArticle

Endohyphal bacteria associated with virulence, increased expression of fumonisin biosynthetic genes, and production of fumonisin and macroconidia in Fusarium fujikuroi W343

Obasa, K., Adesemoye, A., Obasa, R., Moraga-Amador, D., Shinogle, H., Alvarez, S. & Kelley, K., Jan 1 2020, In : Plant Pathology. 69, 1, p. 87-100 14 p.

Research output: Contribution to journalArticle

Kilbournase, a protease-associated domain subtilase secreted by the fungal corn pathogen Stenocarpella maydis

Naumann, T. A., Naldrett, M. J. & Price, N. P. J., Aug 2020, In : Fungal Genetics and Biology. 141, 103399.

Research output: Contribution to journalArticle

Nonsynonymous mutations in linker-2 of the PDR5 multidrug transporter identify a new RNA stability element

Rahman, H., Rudrow, A., Carneglia, J., Patrick Joly, S. S., Nicotera, D., Naldrett, M., Choy, J., Ambudkar, S. V. & Golin, J., Jan 1 2020, In : G3: Genes, Genomes, Genetics. 10, 1, p. 357-369 13 p.

Research output: Contribution to journalArticle

Open Access

Potent, specific MEPicides for treatment of zoonotic staphylococci

Edwards, R. L., Heueck, I., Lee, S. G., Shah, I. T., Miller, J. J., Jezewski, A. J., Mikati, M. O., Wang, X., Brothers, R. C., Heidel, K. M., Osbourn, D. M., Burnham, C. A. D., Alvarez, S., Fritz, S. A., Dowd, C. S., Jez, J. M. & Odom John, A. R., Jun 1 2020, In : PLoS pathogens. 16, 6, p. e1007806

Research output: Contribution to journalArticle

Open Access

Viral myocarditis involves the generation of autoreactive T cells with multiple antigen specificities that localize in lymphoid and non-lymphoid organs in the mouse model of CVB3 infection

Basavalingappa, R. H., Arumugam, R., Lasrado, N., Yalaka, B., Massilamany, C., Gangaplara, A., Riethoven, J. J., Xiang, S. H., Steffen, D. & Reddy, J., Aug 2020, In : Molecular Immunology. 124, p. 218-228 11 p.

Research output: Contribution to journalArticle

2019

Brassicaceae-specific Gretchen Hagen 3 acyl acid amido synthetases conjugate amino acids to chorismate, a precursor of aromatic amino acids and salicylic acid

Holland, C. K., Westfall, C. S., Schaffer, J. E., De Santiago, A., Zubieta, C., Alvarez, S. & Jez, J. M., Nov 8 2019, In : Journal of Biological Chemistry. 294, 45, p. 16855-16864 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome

Lagundžin, D., Hu, W. F., Law, H. C. H., Krieger, K. L., Qiao, F., Clement, E. J., Drincic, A. T., Nedić, O., Naldrett, M. J., Alvarez, S. & Woods, N. T., 2019, In : PloS one. 14, 8, e0220568.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Glucose signaling is connected to chromosome segregation through protein kinase a phosphorylation of the dam1 kinetochore subunit in saccharomyces cerevisiae

Shah, S. B., Parmiter, D., Constantine, C., Elizalde, P., Naldrett, M., Karpova, T. S. & Choy, J. S., Feb 1 2019, In : Genetics. 211, 2, p. 531-547 17 p.

Research output: Contribution to journalArticle

LncRNA Meg3 protects endothelial function by regulating the DNA damage response

Ali, M. S. S. H., Cheng, X., Moran, M., Haemmig, S., Naldrett, M. J., Alvarez, S., Feinberg, M. W. & Sun, X., 2019, In : Nucleic acids research. 47, 3

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Regional Molecular Mapping of Primate Synapses during Normal Healthy Aging

Graham, L. C., Naldrett, M. J., Kohama, S. G., Smith, C., Lamont, D. J., McColl, B. W., Gillingwater, T. H., Skehel, P., Urbanski, H. F. & Wishart, T. M., Apr 23 2019, In : Cell Reports. 27, 4, p. 1018-1026.e4

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

The role of alcohol-induced Golgi fragmentation for androgen receptor signaling in prostate cancer

Manca, S., Frisbie, C. P., LaGrange, C. A., Casey, C. A., Riethoven, J. J. M. & Petrosyan, A., Jan 1 2019, In : Molecular Cancer Research. 17, 1, p. 225-237 13 p.

Research output: Contribution to journalArticle

3 Scopus citations

The Small RNA Teg41 Regulates Expression of the Alpha Phenol-Soluble Modulins and Is Required for Virulence in Staphylococcus aureus

Zapf, R. L., Wiemels, R. E., Keogh, R. A., Holzschu, D. L., Howell, K. M., Trzeciak, E., Caillet, A. R., King, K. A., Selhorst, S. A., Naldrett, M. J., Bose, J. L. & Carroll, R. K., Feb 5 2019, In : mBio. 10, 1

Research output: Contribution to journalArticle

Open Access
7 Scopus citations
2018

Arabidopsis thaliana GH3.15 acyl acid amido synthetase has a highly specific substrate preference for the auxin precursor indole-3-butyric acid

Sherp, A. M., Westfall, C. S., Alvarez, S. & Jez, J. M., Mar 23 2018, In : Journal of Biological Chemistry. 293, 12, p. 4277-4288 12 p.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Epitope Mapping of SERCA2a Identifies an Antigenic Determinant That Induces Mainly Atrial Myocarditis in A/J Mice

Krishnan, B., Massilamany, C., Basavalingappa, R. H., Gangaplara, A., Rajasekaran, R. A., Afzal, M. Z., Khalilzad-Sharghi, V., Zhou, Y., Riethoven, J. J., Nandi, S. S., Mishra, P. K., Sobel, R. A., Strande, J. L., Steffen, D. & Reddy, J., Jan 15 2018, In : Journal of Immunology. 200, 2, p. 523-537 15 p.

Research output: Contribution to journalArticle

2 Scopus citations

Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)

Hovde, B. T., Hanschen, E. R., Steadman Tyler, C. R., Lo, C. C., Kunde, Y., Davenport, K., Daligault, H., Msanne, J., Canny, S., Eyun, S. I., Riethoven, J. J. M., Polle, J. & Starkenburg, S. R., Nov 2018, In : Algal Research. 35, p. 449-461 13 p.

Research output: Contribution to journalArticle

5 Scopus citations

MEPicides: α,β-Unsaturated Fosmidomycin Analogues as DXR Inhibitors against Malaria

Wang, X., Edwards, R. L., Ball, H., Johnson, C., Haymond, A., Girma, M., Manikkam, M., Brothers, R. C., McKay, K. T., Arnett, S. D., Osbourn, D. M., Alvarez, S., Boshoff, H. I., Meyers, M. J., Couch, R. D., Odom John, A. R. & Dowd, C. S., Oct 11 2018, In : Journal of Medicinal Chemistry. 61, 19, p. 8847-8858 12 p.

Research output: Contribution to journalArticle

8 Scopus citations
10 Scopus citations
2017

Branched chain α-ketoacid dehydrogenase kinase 111-130, a T cell epitope that induces both autoimmune myocarditis and hepatitis in A/J mice

Krishnan, B., Massilamany, C., Basavalingappa, R. H., Gangaplara, A., Kang, G., Li, Q., Uzal, F. A., Strande, J. L., Delhon, G. A., Riethoven, J. J., Steffen, D. & Reddy, J., 2017, In : Immunity Inflammation and Disease. 5, 4, p. 421-434 14 p.

Research output: Contribution to journalArticle

5 Scopus citations

Genomics Symposium: Using genomic approaches to uncover sources of variation in age at puberty and reproductive longevity in sows

Wijesena, H. R., Lents, C. A., Riethoven, J. J., Trenhaile-Grannemann, M. D., Thorson, J. F., Keel, B. N., Miller, P. S., Spangler, M. L., Kachman, S. D. & Ciobanu, D. C., Sep 2017, In : Journal of animal science. 95, 9, p. 4196-4205 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

β1-adrenergic receptor contains multiple IAk and IEk binding epitopes that induce T cell responses with varying degrees of autoimmune myocarditis in A/J mice

Basavalingappa, R. H., Massilamany, C., Krishnan, B., Gangaplara, A., Rajasekaran, R. A., Afzal, M. Z., Riethoven, J. J., Strande, J. L., Steffen, D. & Reddy, J., Nov 20 2017, In : Frontiers in immunology. 8, NOV, 1567.

Research output: Contribution to journalArticle

3 Scopus citations
2016

Identification of an Epitope from Adenine Nucleotide Translocator 1 That Induces Inflammation in Heart in A/J Mice

Basavalingappa, R. H., Massilamany, C., Krishnan, B., Gangaplara, A., Kang, G., Khalilzad-Sharghi, V., Han, Z., Othman, S., Li, Q., Riethoven, J. J., Sobel, R. A., Steffen, D. & Reddy, J., Dec 1 2016, In : American Journal of Pathology. 186, 12, p. 3160-3175 16 p.

Research output: Contribution to journalArticle

6 Scopus citations

Identification of evening complex associated proteins in arabidopsis by affinity purification and mass spectrometry

Huang, H., Alvarez, S., Bindbeutel, R., Shen, Z., Naldrett, M. J., Evans, B. S., Briggs, S. P., Hicks, L. M., Kay, S. A. & Nusinow, D. A., Jan 2016, In : Molecular and Cellular Proteomics. 15, 1, p. 201-217 17 p.

Research output: Contribution to journalArticle

Open Access
62 Scopus citations

PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis

Huang, H., Yoo, C. Y., Bindbeutel, R., Goldsworthy, J., Tielking, A., Alvarez, S., Naldrett, M. J., Evans, B. S., Chen, M. & Nusinow, D. A., Feb 3 2016, In : eLife. 5, FEBRUARY2016, e13292.

Research output: Contribution to journalArticle

Open Access
33 Scopus citations
2015

Arabidopsis MSH1 mutation alters the epigenome and produces heritable changes in plant growth

Virdi, K. S., Laurie, J. D., Xu, Y. Z., Yu, J., Shao, M. R., Sanchez, R., Kundariya, H., Wang, D., Riethoven, J. J. M., Wamboldt, Y., Arrieta-Montiel, M. P., Shedge, V. & Mackenzie, S. A., Feb 27 2015, In : Nature communications. 6, 6386.

Research output: Contribution to journalArticle

47 Scopus citations

Mutations in the 5' NTR and the non-structural protein 3A of the coxsackievirus B3 selectively attenuate myocarditogenicity

Massilamany, C., Gangaplara, A., Basavalingappa, R. H., Rajasekaran, R. A., Vu, H., Riethoven, J. J., Steffen, D., Pattnaik, A. K. & Reddy, J., Jun 22 2015, In : PloS one. 10, 6, e0131052.

Research output: Contribution to journalArticle

5 Scopus citations
35 Scopus citations

Overaccumulation of γ-glutamylcysteine in a jasmonate-hypersensitive arabidopsis mutant causes jasmonate-dependent growth inhibition

Wei, H. H., Rowe, M., Riethoven, J. J. M., Grove, R., Adamec, J., Jikumaru, Y. & Staswick, P., Sep 2015, In : Plant physiology. 169, 2, p. 1371-1381 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Quantitative proteomics analysis of camelina sativa seeds overexpressing the AGG3 gene to identify the proteomic basis of increased yield and stress tolerance

Alvarez, S., Roy Choudhury, S., Sivagnanam, K., Hicks, L. M. & Pandey, S., Jun 5 2015, In : Journal of proteome research. 14, 6, p. 2606-2616 11 p.

Research output: Contribution to journalArticle

11 Scopus citations
2014

Contrasting metabolism in perenniating structures of upland and lowland switchgrass plants late in the growing season

Palmer, N. A., Saathoff, A. J., Tobias, C. M., Twigg, P., Xia, Y., Vogel, K. P., Madhavan, S., Sattler, S. E. & Sarath, G., Aug 18 2014, In : PloS one. 9, 8, e105138.

Research output: Contribution to journalArticle

15 Scopus citations

Deep RNA sequencing reveals hidden features and dynamics of early gene transcription in Paramecium bursaria chlorella virus 1

Blanc, G., Mozar, M., Agarkova, I. V., Gurnon, J. R., Yanai-Balser, G., Rowe, J. M., Xia, Y., Riethoven, J. J., Dunigan, D. D. & Van Etten, J. L., Mar 7 2014, In : PloS one. 9, 3, e90989.

Research output: Contribution to journalArticle

19 Scopus citations

Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana

Ding, Y., Virlouvet, L., Liu, N., Riethoven, J. J., Fromm, M. & Avramova, Z., May 22 2014, In : BMC plant biology. 14, 1, 141.

Research output: Contribution to journalArticle

40 Scopus citations

De novo transcriptome assembly from fat body and flight muscles transcripts to identify morph-specific gene expression profiles in Gryllus firmus

Vellichirammal, N. N., Zera, A. J., Schilder, R. J., Wehrkamp, C., Riethoven, J. J. M. & Brisson, J. A., Jan 8 2014, In : PloS one. 9, 1, e82129.

Research output: Contribution to journalArticle

27 Scopus citations

Direct staining with major histocompatibility complex class II dextramers permits detection of antigen-specific, autoreactive CD4 T cells in situ

Massilamany, C., Gangaplara, A., Jia, T., Elowsky, C., Kang, G., Riethoven, J. J., Li, Q., Zhou, Y. & Reddy, J., Jan 27 2014, In : PloS one. 9, 1, e87519.

Research output: Contribution to journalArticle

12 Scopus citations
10 Scopus citations

Effects of chitosan on the protein profile of grape cell culture subcellular fractions

Ferri, M., Franceschetti, M., Naldrett, M. J., Saalbach, G. & Tassoni, A., Jun 2014, In : ELECTROPHORESIS. 35, 11, p. 1685-1692 8 p.

Research output: Contribution to journalArticle

5 Scopus citations

Global analysis of Chlorella variabilis NC64A mRNA profiles during the early phase of Paramecium bursaria chlorella virus-1 infection

Rowe, J. M., Jeanniard, A., Gurnon, J. R., Xia, Y., Dunigan, D. D., Van Etten, J. L. & Blanc, G., Mar 7 2014, In : PloS one. 9, 3, e90988.

Research output: Contribution to journalArticle

10 Scopus citations
2013

Characterization of genome-wide transcriptional changes in liver and adipose tissues of ZDF (fa/fa) rats fed R-α-lipoic acid by next-generation sequencing

Pashaj, A., Yi, X., Xia, M., Canny, S., Riethoven, J. J. M. & Moreau, R., Dec 1 2013, In : Physiological genomics. 45, 23, p. 1136-1143 8 p.

Research output: Contribution to journalArticle

14 Scopus citations

Evaluation of higher plant virus resistance genes in the green alga, Chlorella variabilis NC64A, during the early phase of infection with Paramecium bursaria chlorella virus-1

Rowe, J. M., Dunigan, D. D., Blanc, G., Gurnon, J. R., Xia, Y. & Van Etten, J. L., Aug 1 2013, In : Virology. 442, 2, p. 101-113 13 p.

Research output: Contribution to journalArticle

9 Scopus citations

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

Ding, Y., Liu, N., Virlouvet, L., Riethoven, J. J., Fromm, M. & Avramova, Z., Dec 30 2013, In : BMC plant biology. 13, 1, 229.

Research output: Contribution to journalArticle

102 Scopus citations

Quantitative proteomics-based analysis supports a significant role of GTG proteins in regulation of ABA response in arabidopsis roots

Alvarez, S., Roy Choudhury, S., Hicks, L. M. & Pandey, S., 2013, In : Journal of proteome research. 12, 3, p. 1487-1501 15 p.

Research output: Contribution to journalArticle

25 Scopus citations
2012

Divergent functions of the myotubularin (MTM) homologs AtMTM1 and AtMTM2 in Arabidopsis thaliana: Evolution of the plant MTM family

Ding, Y., Ndamukong, I., Zhao, Y., Xia, Y., Riethoven, J. J., Jones, D. R., Divecha, N. & Avramova, Z., Jun 2012, In : Plant Journal. 70, 5, p. 866-878 13 p.

Research output: Contribution to journalArticle

15 Scopus citations

Evidence that the folate-dependent proteins ygfZ and MnmEG have opposing effects on growth and on activity of the iron-sulfur enzyme MiaB

Waller, J. C., Ellens, K. W., Hasnain, G., Alvarez, S., Rocca, J. R. & Hanson, A. D., Jan 2012, In : Journal of bacteriology. 194, 2, p. 362-367 6 p.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

EvolMarkers: A database for mining exon and intron markers for evolution, ecology and conservation studies

Li, C., Riethoven, J. J. M. & Naylor, G. J. P., Sep 2012, In : Molecular Ecology Resources. 12, 5, p. 967-971 5 p.

Research output: Contribution to journalArticle

12 Scopus citations

Mitochondrial and plastidial COG0354 proteins have folate-dependent functions in iron-sulphur cluster metabolism

Waller, J. C., Ellens, K. W., Alvarez, S., Loizeau, K., Ravanel, S. & Hanson, A. D., Jan 2012, In : Journal of experimental botany. 63, 1, p. 403-411 9 p.

Research output: Contribution to journalArticle

Open Access
20 Scopus citations

Quorum-sensing agr mediates bacterial oxidation response via an intramolecular disulfide redox switch in the response regulator AgrA

Sun, F., Liang, H., Kong, X., Xie, S., Cho, H., Deng, X., Ji, Q., Zhang, H., Alvarez, S., Hicks, L. M., Bae, T., Luo, C., Jiang, H. & He, C., Jun 5 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 23, p. 9095-9100 6 p.

Research output: Contribution to journalArticle

Open Access
54 Scopus citations

The Ser/Thr protein kinase AfsK regulates polar growth and hyphal branching in the filamentous bacteria Streptomyces

Hempel, A. M., Cantlay, S., Molle, V., Wang, S. B., Naldrett, M. J., Parker, J. L., Richards, D. M., Jung, Y. G., Buttner, M. J. & Flärdh, K., Aug 28 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 35, p. E2371-E2379

Research output: Contribution to journalArticle

71 Scopus citations
2011

Activated AMPK and prostaglandins are involved in the response to conjugated linoleic acid and are sufficient to cause lipid reductions in adipocytes

Jiang, S., Chen, H., Wang, Z., Riethoven, J. J., Xia, Y., Miner, J. & Fromm, M., Jul 2011, In : Journal of Nutritional Biochemistry. 22, 7, p. 656-664 9 p.

Research output: Contribution to journalArticle

12 Scopus citations

Chemical genetics and cereal starch metabolism: Structural basis of the non-covalent and covalent inhibition of barley β-amylase

Rejzek, M., Stevenson, C. E., Southard, A. M., Stanley, D., Denyer, K., Smith, A. M., Naldrett, M. J., Lawson, D. M. & Field, R. A., Mar 1 2011, In : Molecular BioSystems. 7, 3, p. 718-730 13 p.

Research output: Contribution to journalArticle

29 Scopus citations

Microarray analysis of gene expression profiles in cells transfected with nonviral vectors

Plautz, S. A., Boanca, G., Riethoven, J. J. M. & Pannier, A. K., Dec 2011, In : Molecular Therapy. 19, 12, p. 2144-2151 8 p.

Research output: Contribution to journalArticle

13 Scopus citations