College of Agricultural Sciences & Natural Resources

Research output

Research output per year 1966 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2024

• 3192 Article
• 338 Review article
• 143 Chapter
• 47 Conference contribution
• 132 More
  • 46 Comment/debate
  • 36 Editorial
  • 29 Letter
  • 11 Short survey
  • 6 Book
  • 3 Foreword/postscript
  • 1 Paper

Research output per year

Research output per year

Search results

• 2022

  Experimental Design for Controlled Environment High-Throughput Plant Phenotyping

  Clarke, J. L., Qiu, Y. & Schnable, J. C., 2022, Methods in Molecular Biology. Humana Press Inc., p. 57-68 12 p. (Methods in Molecular Biology; vol. 2539).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Phenotype 100%
  • High Throughput 100%
  • Experimental Design 100%
  • R Statistical Language 33%
  1 Scopus citations

• Statistical Methods for the Quantitative Genetic Analysis of High-Throughput Phenotyping Data

  Morota, G., Jarquin, D., Campbell, M. T. & Iwata, H., 2022, Methods in Molecular Biology. Humana Press Inc., p. 269-296 28 p. (Methods in Molecular Biology; vol. 2539).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Phenotype 100%
  • Quantitative Genetics 100%
  • Marker-Assisted Selection 33%
  • Aerial Vehicle Detection 20%
  • Longitudinal Modeling 20%
  4 Scopus citations

• The Environmental Contribution to Redox Dyshomeostasis in Parkinson’s Disease

  Garza-Lombó, C. & Franco, R., 2022, Molecular and Integrative Toxicology. Springer Science and Business Media B.V., p. 69-102 34 p. (Molecular and Integrative Toxicology).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Parkinson's Disease 100%
  • Redox Homeostasis 100%
  • Environmental Contribution 100%
  • Homeostasis 100%
  • Oxidative Damage 80%
  1 Scopus citations

• Use of a Ferret Model to Test Efficacy and Immunogenicity of Live Attenuated Mycobacterium avium Subspecies paratuberculosis Vaccines

  Bannantine, J. P., Gupta, T., Zinniel, D. K., Hikal, A., Quinn, F. D. & Barletta, R. G., 2022, Methods in Molecular Biology. Humana Press Inc., p. 95-104 10 p. (Methods in Molecular Biology; vol. 2411).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Vaccine Efficacy 100%
  • Mustela Putorius Furo 100%
  • Mycobacterium Avium Subspecies Paratuberculosis 100%
  • Immunogenicity 100%
  • Mycobacterium Avium Subsp. Paratuberculosis 100%
  3 Scopus citations
• 2021

  CHAPTER 12: Food-derived Peptides in Lipid Metabolism

  Ganguly, A., Sharma, K. & Majumder, K., 2021, Nutritional Signaling Pathway Activities in Obesity and Diabetes. Udenigwe, C. C. (ed.). 27 ed. Royal Society of Chemistry, p. 292-310 19 p. (Food Chemistry, Function and Analysis; vol. 2021-January, no. 27).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Cardiovascular Disease 100%
  • Amino Acid 100%
  • Triacylglycerol 100%
  • Elimination 100%
  • Dyslipidemia 100%

• Heritable Congenital Defects

  Whitlock, B. K., Beever, J. E. & Steffen, D. J., Jan 1 2021, Bovine Reproduction. wiley, p. 863-875 13 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Arthrogryposis multiplex 100%
  • Characteristic Modes 49%
  • Water Head 49%
  • Fawn 49%
  1 Scopus citations

• Mass spectrometry-based profiling of plant sphingolipids from typical and aberrant metabolism

  Cahoon, R. E., Solis, A. G., Markham, J. E. & Cahoon, E. B., 2021, Methods in Molecular Biology. Humana Press Inc., p. 157-177 21 p. (Methods in Molecular Biology; vol. 2295).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Metabolism 100%
  • Mass Spectrometry 100%
  • Sphingolipids 100%
  • Plant Sphingolipids 100%
  • Metabolic Pathway 100%
  4 Scopus citations

• Methodologies for studying the structure-function relationship of food-derived peptides with biological activities

  Ganguly, A., Sharma, K. & Majumder, K., Jan 1 2021, Biologically Active Peptides: From Basic Science to Applications for Human Health. Elsevier, p. 239-254 16 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bioactive Compound 100%
  • Bioactive Peptides 100%
  • Nutritive Value 100%
  • Enzymatic Hydrolysis 100%
  • Relation Model 33%

• Specimen Preparation and Observations of Magnaporthe oryzae Appressorial Cells Under Electron Microscopy

  Rocha, R. O. & Wilson, R. A., 2021, Methods in Molecular Biology. Humana Press Inc., p. 79-85 7 p. (Methods in Molecular Biology; vol. 2356).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Electron Microscopy 100%
  • Magnaporthe Oryzae 100%
  • Surface Property 33%
  • Appressoria 33%
  • Appressorium 33%

• Tandem Affinity Purification (TAP) of Low-Abundance Protein Complexes in Filamentous Fungi Demonstrated Using Magnaporthe oryzae

  Li, G. & Wilson, R. A., 2021, Methods in Molecular Biology. Humana Press Inc., p. 97-108 12 p. (Methods in Molecular Biology; vol. 2356).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Protein Complexes 100%
  • Magnaporthe Oryzae 100%
  • Filamentous Fungus 100%
  • Tandem Affinity Purification 100%
  • Copurification 80%
  2 Scopus citations
• 2020

  Biotin

  Penberthy, W. T., Sadri, M. & Zempleni, J., Jan 1 2020, Present Knowledge in Nutrition: Basic Nutrition and Metabolism. Elsevier, p. 289-303 15 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Biotin 100%
  • Metabolic Pathway 18%
  • Holocarboxylase Synthetase 18%
  • Biotinidase 18%
  • Biotin Deficiency 18%
  6 Scopus citations

• Current Approaches in Quantitative Proteomics

  Johnson, P. E. & Downs, M. L., Nov 12 2020, Comprehensive Foodomics. Elsevier, p. 642-650 9 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Discovery and Characterization of Non-coding RNA Through Modern Genomics

  Zhang, C., Yu, B. & Sun, X., Nov 12 2020, Comprehensive Foodomics. Elsevier, p. 284-298 15 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Functional Discovery of Small Non-coding RNA Through Computational Inference

  Voshall, A. & Cui, J., Nov 12 2020, Comprehensive Foodomics. Elsevier, p. 329-337 9 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Introduction to Epigenetics and Noncoding RNA

  Cui, J., Nov 12 2020, Comprehensive Foodomics. Elsevier, p. 257 1 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Peptides as biopolymers-past, present, and future

  Ganguly, A., Sharma, K. & Majumder, K., Jan 23 2020, Biopolymer-Based Formulations: Biomedical and Food Applications. Elsevier, p. 87-104 18 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Biopolymer 100%
  • Biomaterial 75%
  • Peptide Nanomaterials 50%
  • Amino Acids 25%
  • Peptide Signatures 25%
  10 Scopus citations
• 2019

  Bioprocesses for wastewater reuse: Closed- loop system for energy options

  Azam, R., Pandey, A., Black, P. N., Tyagi, V. V. & Kothari, R., Mar 9 2019, Water Conservation, Recycling and Reuse: Issues and Challenges. Springer Singapore, p. 121-145 25 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Energy Options 100%
  • Biogas 100%
  • Biological Treatment 66%
  • Energy Production Systems 33%
  • Biohydrogen 33%
  2 Scopus citations

• CHAPTER 13: Bioactive Egg Proteins

  Nolasco, E., Guha, S. & Majumder, K., 2019, Steviol Glycosides: Cultivation, Processing, Analysis and Applications in Food. Wu, J. (ed.). 14 ed. Royal Society of Chemistry, p. 223-258 36 p. (Food Chemistry, Function and Analysis; vol. 2019-January, no. 14).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Biological Activity 100%
  • Egg 100%
  • Derived Protein 40%
  • Functional Food 25%
  • Signal Transduction 20%
  5 Scopus citations

• CHAPTER 15: Interactions between Grains and the Microbiome

  Brahma, S. & Rose, D. J., 2019, Steviol Glycosides: Cultivation, Processing, Analysis and Applications in Food. Beta, T. & Camire, M. E. (eds.). 6 ed. Royal Society of Chemistry, p. 332-356 25 p. (Food Chemistry, Function and Analysis; vol. 2019-January, no. 6).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Microbiome 100%
  • Intestine Flora 100%
  • Cereal 100%
  • Phenolic Compound 25%
  • Taxon 20%
  1 Scopus citations

• Data Analysis of ChIP-Seq Experiments: Common Practice and Recent Developments

  Zhang, Q., Jan 1 2019, Computational Epigenetics and Diseases. Elsevier, p. 67-77 11 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Peak Calling 100%
  • Enrichment Detection 25%
  • Molecular Epigenetics 25%

• Food-derived bioactive peptides and their role in ameliorating hypertension and associated cardiovascular diseases

  Ganguly, A., Sharma, K. & Majumder, K., 2019, Advances in Food and Nutrition Research. Toldrá, F. (ed.). Academic Press Inc., p. 165-207 43 p. (Advances in Food and Nutrition Research; vol. 89).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bioactive Peptides 100%
  • Antioxidant 25%
  • Nutraceutical 25%
  • Dietary Prevention 16%
  39 Scopus citations

• Generation of Vaccinia Virus Gene Deletion Mutants Using Complementing Cell Lines

  Rico, A. B., Olson, A. T. & Wiebe, M. S., 2019, Methods in Molecular Biology. Humana Press Inc., p. 93-108 16 p. (Methods in Molecular Biology; vol. 2023).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Virus Gene 100%
  • Vaccinia Virus 100%
  • Gene Deletion mutants 100%
  • Complementing Cells 100%
  • Cell Line 100%
  1 Scopus citations

• Jaboticaba: Chemistry and Bioactivity

  Ribeiro, N. C. B. V., Baseggio, A. M. & Schlegel, V., 2019, Reference Series in Phytochemistry. Springer Science and Business Media B.V., p. 1225-1251 27 p. (Reference Series in Phytochemistry).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bioactive Compound 100%
  • Phenolic Compound 100%
  • Anthocyanin 100%
  • Jaboticaba 100%
  • Cyanidin 50%
  2 Scopus citations

• Metabolomics analyses from tissues in parkinson’s disease

  Bhinderwala, F., Lei, S., Woods, J., Rose, J., Marshall, D. D., Riekeberg, E., Leite, A. D. L., Morton, M., Dodds, E. D., Franco, R. & Powers, R., 2019, Methods in Molecular Biology. Humana Press Inc., p. 217-257 41 p. (Methods in Molecular Biology; vol. 1996).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Parkinson's Disease 100%
  • Metabolomics 100%
  • Neurodegenerative Disorder 50%
  • Nervous System Disorder 50%
  • Mass Spectrometry 50%
  15 Scopus citations

• Methods for determining the reduction potentials of flavin enzymes

  Christgen, S. L., Becker, S. M. & Becker, D. F., 2019, Methods in Enzymology. Palfey, B. A. (ed.). Academic Press Inc., p. 1-25 25 p. (Methods in Enzymology; vol. 620).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Reduction (Chemistry) 100%
  • Indicator Dyes 85%
  • Redox Dyes 85%
  16 Scopus citations

• NMR Metabolomics Protocols for Drug Discovery

  Bhinderwala, F. & Powers, R., 2019, Methods in Molecular Biology. Humana Press Inc., p. 265-311 47 p. (Methods in Molecular Biology; vol. 2037).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Metabolomics 100%
  • Metabolome 100%
  • Incorrect Data 25%
  • Biological Activity 20%
  19 Scopus citations

• Role of mycobacterium tuberculosis PE and PPE proteins in pathogen-host interactions

  Rathnaiah, G., Zinniel, D. K. & Barletta, R. G., Sep 10 2019, Tuberculosis Host-Pathogen Interactions. Springer International Publishing, p. 113-121 9 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Secretion (Process) 100%
  • Mycobacterium Tuberculosis 100%
  • Host-Pathogen Interaction 100%
  • Immunopathogenesis 100%
  • Proline 100%
  1 Scopus citations

• Transposon Mutagenesis in Mycobacterium avium Subspecies Paratuberculosis

  Bannantine, J. P., Zinniel, D. K. & Barletta, R. G., 2019, Methods in Molecular Biology. Humana Press Inc., p. 117-125 9 p. (Methods in Molecular Biology; vol. 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Transposon mutagenesis 100%
  • Mycobacterium Avium Subsp. Paratuberculosis 100%
  • Transposon 66%
  • Incubation 33%
  • Gene Function 33%
  2 Scopus citations

• X-ray absorption spectroscopy of metalloproteins

  Zhang, L., 2019, Methods in Molecular Biology. Humana Press Inc., p. 179-195 17 p. (Methods in Molecular Biology; vol. 1876).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Metalloprotein 100%
  • Sensitivity Requirement 33%
  • Chemical Sensitivity 33%
  • Chemical Specificity 33%
  2 Scopus citations
• 2018

  Aromatization

  Wood, J. R. & Cupp, A. S., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 195-201 7 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Aromatase 100%
  • Estrogen Excess 66%
  • Breast Cancer 25%
  • Malignant Neoplasm 25%
  • Disease 25%

• Biophysical approaches to solve the structures of the complex glycan shield of chloroviruses

  De Castro, C., Duncan, G. A., Garozzo, D., Molinaro, A., Sturiale, L., Tonetti, M. & Van Etten, J. L., 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 237-257 21 p. (Advances in Experimental Medicine and Biology; vol. 1104).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Capsid 100%
  • Chlorovirus 100%
  • Rhamnose 66%
  • Monosaccharide 66%
  • Glycosylation 33%
  2 Scopus citations

• Egg proteins

  Guha, S., Majumder, K. & Mine, Y., Jan 1 2018, Encyclopedia of Food Chemistry. Elsevier, p. 74-84 11 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Eggshell 100%
  • Egg Protein 100%
  • Egg 100%
  • Dietary Protein 60%
  • Egg White 60%
  38 Scopus citations

• Immunity-associated programmed cell death as a tool for the identification of genes essential for plant innate immunity

  Zhou, B. & Zeng, L., 2018, Methods in Molecular Biology. Humana Press Inc., p. 51-63 13 p. (Methods in Molecular Biology; vol. 1743).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Essential Gene 100%
  • Plant Disease Management 20%
  • Agroinfiltration 20%
  • Potential Infection 20%
  2 Scopus citations

• Metabolome analysis

  Braga, C. P. & Adamec, J., Jan 1 2018, Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics. Elsevier, Vol. 1-3. p. 463-475 13 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Metabolomics 100%
  • Metabolome Analysis 100%
  • Tamsulosin 100%
  • Metabolome 100%
  • Metabolite 57%
  13 Scopus citations

• Metallomics in Fish

  Braga, C. P., Adamec, J. & de Magalhães Padilha, P., 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 101-110 10 p. (Advances in Experimental Medicine and Biology; vol. 1055).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Metalloprotein 100%
  • Metallomics 100%
  • Metabolite 100%
  • Metalloid 100%
  • Cell Function 50%
  2 Scopus citations

• Noncoding RNAs as a Cause of Cancer

  Cui, J., Jan 1 2018, Cancer and Noncoding RNAs. Elsevier, p. 479-496 18 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Cancer Causes 100%
  • Non-coding RNA (ncRNA) 100%
  • Non-Coding RNA 100%
  • Prognostic Biomarker 50%
  • Therapeutic Agents 25%
  1 Scopus citations

• Vascular cells

  Romereim, S. & Cupp, A., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 47-52 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Vascularization 100%
  • Morphogenesis 100%
  • Cell Function 100%
  • Testis Development 100%
  • Seminiferous Tubule 100%
• 2017

  Chemical Intoxications

  Taylor, S. L., Feb 6 2017, Foodborne Diseases: Third Edition. Elsevier Inc., p. 447-458 12 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Disease 100%
  • Toxic Injury 100%
  • Food-Borne Disease 100%
  • Malignant Neoplasm 33%
  • Epidemic 33%
  6 Scopus citations

• Definition and design of hypoallergenic foods

  Mahler, V. & Goodman, R. E., May 8 2017, Molecular Allergy Diagnostics: Innovation for a Better Patient Management. Springer International Publishing, p. 487-511 25 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  6 Scopus citations

• Detection of food allergen residues by immunoassays and mass spectrometry

  Muralidharan, S., Zhao, Y., Taylor, S. L. & Lee, N. A., Jan 1 2017, Food Allergy: Molecular and Clinical Practice. CRC Press, p. 229-282 54 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Egg 100%
  • Cow Milk 100%
  • Soybean 50%
  • Tree Nut 50%
  • Allergy Prevalence 22%
  2 Scopus citations

• Disease Processes in Foodborne Illness

  Taylor, S. L., Feb 6 2017, Foodborne Diseases: Third Edition. Elsevier Inc., p. 3-30 28 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Foodborne Disease 100%
  • Disease Process 100%
  • Food-Borne Disease 100%
  • Illness 66%
  • Eating 66%
  1 Scopus citations

• Groundwater Scarcity: Management Approaches and Recent Innovations

  Kuwayama, Y., Young, R. & Brozović, N., 2017, Competition for Water Resources: Experiences and Management Approaches in the US and Europe. Elsevier Inc., p. 332-350 19 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Groundwater Scarcity 100%
  • Innovative Regulation 50%
  • Innovative Initiatives 50%
  4 Scopus citations

• Naturally Occurring Toxicants in Foods

  Taylor, S. L. & Hefle, S. L., Feb 6 2017, Foodborne Diseases: Third Edition. Elsevier Inc., p. 327-344 18 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Natural Substances 100%
  • Synthetic Substances 100%
  9 Scopus citations

• Quantification of cell signaling networks using kinase activity chemosensors

  Beck, J. R., Harris, E. N. & Stains, C. I., 2017, Methods in Molecular Biology. Humana Press Inc., p. 61-70 10 p. (Methods in Molecular Biology; vol. 1636).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Kinase 100%
  • Phosphotransferase 100%
  • Signal Transduction 100%
  • Cell Signaling 100%
  • Cell Signaling Networks 100%
  2 Scopus citations

• Science based evaluation of potential risks of food allergy from genetically engineered crops

  Goodman, R. E., Jan 1 2017, Allergy and Allergen Immunotherapy: New Mechanisms and Strategies. Apple Academic Press, p. 369-400 32 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Eggplant 100%
  • Indian Guidelines 28%
  • Immediate Reactions 14%
  • Food Contact 14%
  • Commercial Seeds 14%

• Structural biology of the DJ-1 superfamily

  Smith, N. & Wilson, M. A., 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 5-24 20 p. (Advances in Experimental Medicine and Biology; vol. 1037).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • DJ-1 100%
  • Structural Biology 100%
  • DJ-1 Superfamily 100%
  • Heat Shock Protein 100%
  • Protease 100%
  33 Scopus citations
• 2016

  Controlling groundwater exploitation through economic instruments: Current practices, challenges and innovative approaches

  Montginoul, M., Rinaudo, J. D., Brozović, N. & Donoso, G., Jan 1 2016, Integrated Groundwater Management: Concepts, Approaches and Challenges. Springer International Publishing, p. 551-581 31 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Groundwater Exploitation 100%
  • Economic Instrument 100%
  • Management Pressure 33%
  24 Scopus citations

• Insects and Their Connection to Food Allergy

  Downs, M., Johnson, P. & Zeece, M. G., Jan 1 2016, Insects as Sustainable Food Ingredients: Production, Processing and Food Applications. Elsevier, p. 255-272 18 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Novel Food 100%
  • Arginine 33%
  • Insect Consumption 25%
  • Insect Food 25%
  • Shellfish Allergy 25%
  19 Scopus citations

• Molecular aspects of physical performance and nutritional assessment

  Hassan, Y. I. & Zempleni, J., Apr 19 2016, Nutritional Assessment of Athletes: Second Edition. CRC Press, p. 213-232 20 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  1 Scopus citations

• Serotonin and the regulation of mammalian circadian rhythms

  Sollars, P. J., Pickard, G. E. & Sprouse, J. S., Jan 1 2016, The Curated Reference Collection in Neuroscience and Biobehavioral Psychology. Elsevier Science Ltd., p. 723-730 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Suprachiasmatic nucleus 100%
  • Serotonin 100%
  • Mammalian Circadian Rhythm 100%
  • Suprachiasmatic Nucleus 100%
  • Circadian Rhythm 100%