College of Agricultural Sciences & Natural Resources

Research output

Research output per year 1966 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023

• 2777 Article
• 308 Review article
• 131 Chapter
• 46 Conference contribution
• 123 More
  • 42 Comment/debate
  • 34 Editorial
  • 28 Letter
  • 9 Short survey
  • 6 Book
  • 3 Foreword/postscript
  • 1 Paper

Research output per year

Research output per year

Search results

• 2019

  Applying molecular communication theory to multi-scale integrated models of biological pathways

  Sakkaff, Z., Unluturk, B. D. & Pierobon, M., Sep 25 2019, Proceedings of the 6th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2019. Association for Computing Machinery, Inc, 3345495. (Proceedings of the 6th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2019).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Integrated Model 100%
  • Communication Channels 97%
  • Multiscale Model 97%
  • Communication Theory 96%
  • communication theory 86%
  1 Scopus citations

• Prediction approach for ising model estimation

  Li, J., Pan, Y., Yu, H. & Zhang, Q., Nov 2019, Proceedings - 19th IEEE International Conference on Data Mining Workshops, ICDMW 2019. Papapetrou, P., Cheng, X. & He, Q. (eds.). IEEE Computer Society, p. 703-710 8 p. 8955520. (IEEE International Conference on Data Mining Workshops, ICDMW; vol. 2019-November).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Ising model 100%
  • Random forests 11%
  • Tuning 8%
• 2018

  Applying molecular communication theory to estimate information loss in cell signal transduction: An approach based on cancer transcriptomics

  Sakkaff, Z., Immaneni, A. & Pierobon, M., Sep 5 2018, Proceedings of the 5th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2018. Association for Computing Machinery, Inc, (Proceedings of the 5th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2018).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Signal Transduction 100%
  • Signal transduction 93%
  • Information Loss 91%
  • Communication Theory 86%
  • communication theory 77%
  1 Scopus citations

• Estimating Information Exchange Performance of Engineered Cell-to-cell Molecular Communications: A Computational Approach

  Harper, C., Pierobon, M. & Magarini, M., Oct 8 2018, INFOCOM 2018 - IEEE Conference on Computer Communications. Institute of Electrical and Electronics Engineers Inc., p. 729-737 9 p. 8485834. (Proceedings - IEEE INFOCOM; vol. 2018-April).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Cell engineering 100%
  • Communication systems 91%
  • Communication 86%
  • Synthetic biology 85%
  • Oncology 77%
  14 Scopus citations

• Estimating the Molecular Information Through Cell Signal Transduction Pathways

  Sakkaff, Z., Immaneni, A. & Pierobon, M., Aug 24 2018, 2018 IEEE 19th International Workshop on Signal Processing Advances in Wireless Communications, SPAWC 2018. Institute of Electrical and Electronics Engineers Inc., 8445884. (IEEE Workshop on Signal Processing Advances in Wireless Communications, SPAWC; vol. 2018-June).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Signal transduction 100%
  • Health 24%
  • Internet 22%
  • Communication 16%
  7 Scopus citations
• 2017

  A biological circuit design for modulated parity-check encoding in molecular communication

  Marcone, A., Pierobon, M. & Magarini, M., Jul 28 2017, 2017 IEEE International Conference on Communications, ICC 2017. Debbah, M., Gesbert, D. & Mellouk, A. (eds.). Institute of Electrical and Electronics Engineers Inc., 7997032. (IEEE International Conference on Communications).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Networks (circuits) 100%
  • Communication 91%
  • Modulators 61%
  • Bioremediation 49%
  • Channel coding 35%
  5 Scopus citations

• A frequency analysis on calcium T-type signaling in the nervous system

  Khodaei, A., Vakilzadian, H. & Pierobon, M., Sep 27 2017, 2017 IEEE International Conference on Electro Information Technology, EIT 2017. IEEE Computer Society, p. 640-644 5 p. 8053442. (IEEE International Conference on Electro Information Technology).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Neurology 100%
  • Calcium 91%
  • Depolarization 19%
  • Power spectral density 15%
  • Membranes 11%

• A microfluidic feed forward loop pulse generator for molecular communication

  Deng, Y., Pierobon, M. & Nallanathan, A., Jul 1 2017, 2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1-7 7 p. (2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings; vol. 2018-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Pulse generators 100%
  • Microfluidics 81%
  • Communication 38%
  • Pulse modulation 18%
  • Information theory 14%
  12 Scopus citations

• A new statistical model for genome-scale MicroRNA target prediction

  Hakguder, Z., Liao, C., Shu, J. & Cui, J., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 101-107 7 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Statistical Models 100%
  • Genomics 92%
  • MicroRNAs 75%
  • Messenger RNA 74%
  • Binding sites 74%
  1 Scopus citations

• A new system for human microRNA functional evaluation and network

  Han, J., Shu, J. & Cui, J., Jan 17 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Burrage, K., Zhu, Q., Liu, Y., Tian, T., Wang, Y., Hu, X. T., Jiang, Q., Song, J., Morishita, S., Burrage, K. & Wang, G. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 278-283 6 p. 7822531. (Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • MicroRNA 100%
  • MicroRNAs 68%
  • Data Curation 13%
  • Genes 10%
  • Gene Ontology 10%

• A parity check analog decoder for molecular communication based on biological circuits

  Marcone, A., Pierobon, M. & Magarini, M., Oct 2 2017, INFOCOM 2017 - IEEE Conference on Computer Communications. Institute of Electrical and Electronics Engineers Inc., 8057131. (Proceedings - IEEE INFOCOM).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Networks (circuits) 100%
  • Communication 91%
  • Gene expression 49%
  • Medicine 45%
  • Molecules 44%
  9 Scopus citations

• A simulation model of glucose-insulin metabolism and implementation on OSG

  Rad, M. G., Immaneni, A., McCabe, M., Pierobon, M. & Cui, J., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1832-1839 8 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Insulin 100%
  • Metabolism 94%
  • Glucose 84%
  • Adenosinetriphosphate 38%
  • Adenosine Triphosphate 28%

• BioSIMP: Using Software Testing Techniques for Sampling and Inference in Biological Organisms

  Cashman, M., Catlett, J. L., Cohen, M. B., Buan, N. R., Sakkaff, Z., Pierobon, M. & Kelley, C. A., Jun 29 2017, Proceedings - 2017 IEEE/ACM 12th International Workshop on Software Engineering for Science, SE4Science 2017. Institute of Electrical and Electronics Engineers Inc., p. 2-8 7 p. 7964305. (Proceedings - 2017 IEEE/ACM 12th International Workshop on Software Engineering for Science, SE4Science 2017).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Software testing 100%
  • Software engineering 68%
  • Sampling 59%
  • Systems Biology 55%
  • Swarm intelligence 50%
  3 Scopus citations

• Dictionary coded profiles and their use with nanopore sequencers

  Murray, K., Dunigan, D. D. & Sayood, K., Sep 27 2017, 2017 IEEE International Conference on Electro Information Technology, EIT 2017. IEEE Computer Society, p. 422-426 5 p. 8053398. (IEEE International Conference on Electro Information Technology).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nanopores 100%
  • Molecules 65%
  • Glossaries 65%
  • Genomics 35%

• Digital modulation and achievable information rates of thru-body haptic communications

  Hanisch, N. & Pierobon, M., 2017, Disruptive Technologies in Sensors and Sensor Systems. Hall, R. D., Blowers, M. & Williams, J. (eds.). SPIE, 1020603. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 10206).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Haptics 100%
  • Information Rates 77%
  • Modulation 64%
  • Communication 48%
  • communication 44%
  3 Scopus citations

• End-to-end molecular communication channels in cell metabolism: An information theoretic study

  Sakkaf, Z., Catlett, J. L., Cashman, M., Pierobon, M., Buan, N. R., Cohen, M. B. & Kelley, C. A., Sep 27 2017, Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, NanoCom 2017. Association for Computing Machinery, Inc, 21. (Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, NanoCom 2017).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Synthetic biology 100%
  • Communication Channels 94%
  • Chemical compounds 94%
  • Metabolism 91%
  • Ecology 83%
  7 Scopus citations

• MiRDR-OSG: MicroRNA dynamic regulation analysis utilizing open science grid

  Shu, J. & Cui, J., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1846-1851 6 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • MicroRNAs 100%
  • RNA 95%
  • Gene expression 86%
  • Messenger RNA 55%
  • Pipelines 29%

• The Gaussian approximation in soft detection for molecular communication via biological circuits

  Marcone, A., Pierobon, M. & Magarini, M., Dec 19 2017, 18th IEEE International Workshop on Signal Processing Advances in Wireless Communications, SPAWC 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-6 6 p. 8227764. (IEEE Workshop on Signal Processing Advances in Wireless Communications, SPAWC; vol. 2017-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Networks (circuits) 100%
  • Communication 91%
  • Molecules 88%
  • Chemical reactions 45%
  • Communication systems 36%
  8 Scopus citations

• When technology meets technology: Retrained 'Inception V3' classifier for NGS based pathogen detection

  Sinha, R. & Clarke, J., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1-5 5 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Pathogens 100%
  • Classifiers 52%
  • Technology 48%
  • Nucleotides 36%
  • Metagenomics 36%
  4 Scopus citations
• 2016

  An intra-body linear channel model based on neuronal subthreshold stimulation

  Khodaei, A. & Pierobon, M., Jul 12 2016, 2016 IEEE International Conference on Communications, ICC 2016. Institute of Electrical and Electronics Engineers Inc., 7511483. (2016 IEEE International Conference on Communications, ICC 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Neurons 100%
  • Communication systems 43%
  • Neurophysiology 41%
  • Neurology 32%
  • Wearable technology 30%
  12 Scopus citations

• Mutual information upper bound of molecular communication based on cell metabolism

  Pierobon, M., Sakkaff, Z., Catlett, J. L. & Buan, N. R., Aug 9 2016, SPAWC 2016 - 17th IEEE International Workshop on Signal Processing Advances in Wireless Communications. Institute of Electrical and Electronics Engineers Inc., 7536835. (IEEE Workshop on Signal Processing Advances in Wireless Communications, SPAWC; vol. 2016-August).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Metabolism 100%
  • Synthetic biology 58%
  • Communication 39%
  • Chemical reactions 39%
  • Chemical analysis 25%
  14 Scopus citations

• Subthreshold linear modeling of dendritic trees: A computational approach

  Khodaei, A. & Pierobon, M., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 235-238 4 p. 7590683. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Neurons 100%
  • Wearable Electronic Devices 70%
  • Carisoprodol 53%
  • Electric Stimulation 44%
  • Neurology 42%
  4 Scopus citations

• The assurance timeline: Building assurance cases for synthetic biology

  Cohen, M. B., Firestone, J. & Pierobon, M., 2016, Computer Safety, Reliability, and Security, SAFECOMP 2016 - Workshops ASSURE, DECSoS, SASSUR, and TIPS, Proceedings. Guiochet, J., Schoitsch, E., Bitsch, F. & Skavhaug, A. (eds.). Springer Verlag, p. 75-86 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9923 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Synthetic Biology 100%
  • Synthetic biology 87%
  • Drug Delivery 23%
  • Bioengineering 20%
  • Drug delivery 19%
  3 Scopus citations
• 2015

  A biochemical filter for frequency-based signal reception in molecular communication

  Laddomada, M. & Pierobon, M., 2015, 2015 IEEE Global Communications Conference, GLOBECOM 2015. Institute of Electrical and Electronics Engineers Inc., 7417148. (2015 IEEE Global Communications Conference, GLOBECOM 2015).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • communication system 100%
  • communication 93%
  • Communication 88%
  • biology 74%
  • Communication systems 69%

• A crosstalk-based linear filter in biochemical signal transduction pathways for the internet of bio-things

  Laddomada, M. & Pierobon, M., Aug 4 2015, 2015 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 5520-5524 5 p. 7179027. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2015-August).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Signal transduction 100%
  • Crosstalk 75%
  • Internet 45%
  • Notch filters 41%
  • Chemical reactions 33%
  4 Scopus citations

• An optical biosensor for detection of pathogen biomarkers from Shiga toxin-producing Escherichia coli in ground beef samples

  Lamoureux, L., Adams, P., Banisadr, A., Stromberg, Z., Graves, S., Montano, G., Moxley, R. & Mukundan, H., 2015, Frontiers in Biological Detection: From Nanosensors to Systems VII. Cunningham, B. T., Miller, B. L. & Fauchet, P. M. (eds.). SPIE, 931004. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9310).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Beef 100%
  • pathogens 92%
  • Shiga-Toxigenic Escherichia coli 89%
  • Pathogens 89%
  • biomarkers 88%
  2 Scopus citations

• Human absorbable microRNA prediction based on an ensemble manifold ranking model

  Shu, J., Chiang, K., Zhao, D. & Cui, J., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 295-300 6 p. 7359697. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • MicroRNAs 100%
  • Milk 52%
  • RNA 47%
  • Viruses 46%
  • Genes 37%
  4 Scopus citations
• 2014

  A molecular communication system model based on biological circuits

  Pierobon, M., 2014, Proceedings of the 1st ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2014. Association for Computing Machinery, 2619958. (Proceedings of the 1st ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2014).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Communication systems 100%
  • Molecules 81%
  • Networks (circuits) 69%
  • Communication 63%
  • Synthetic biology 62%
  11 Scopus citations
• 2013

  Molecular communication model of nanoparticle-body interactions in Particulate Drug Delivery Systems

  Chahibi, Y., Pierobon, M. & Song, S. O., 2013, Conference Record of the 47th Asilomar Conference on Signals, Systems and Computers. IEEE Computer Society, p. 1051-1055 5 p. 6810452. (Conference Record - Asilomar Conference on Signals, Systems and Computers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Drug Delivery Systems 100%
  • Nanoparticles 67%
  • Pharmacokinetics 48%
  • Communication 34%
  • Advection 21%
  4 Scopus citations
• 2011

  Autohydrolytic production of feruloylated arabinoxylan hydrolysates from cereal processing coproducts for food applications

  Rose, D. J., 2011, Advances in Cereal Science: Implications to Food Processing and Health Promotion. American Chemical Society, p. 111-130 20 p. (ACS Symposium Series; vol. 1089).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Arabinoxylans 100%
  • Arabinoxylan 93%
  • Food 42%
  • Fibers 40%
  • Fiber 38%
  6 Scopus citations

• Differential analysis of lipids in xylose fermenting S. cerevisiae 424A (LNH-ST) and its ethanol resistant variant S. cerevisiae 424A (LNH-ST)-ER

  Kim, J. H., Adamec, J., Mosier, N. S., Ho, N. W. Y. & Sedlak, M., 2011, 11AIChE - 2011 AIChE Annual Meeting, Conference Proceedings. (11AIChE - 2011 AIChE Annual Meeting, Conference Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Xylose 100%
  • Lipids 87%
  • Ethanol 65%
  • Fatty acids 50%
  • Strain 45%

• Differential analysis of lipids in xylose fermenting S. cerevisiae 424A (LNH-ST) and its ethanol resistant variant S. cerevisiae 424A (LNH-ST)-ER

  Kim, J. H., Adamec, J., Mosier, N. S., Ho, N. W. Y. & Sedlak, M., 2011, Sustainable Engineering Forum: Core Programming Topic at the 2011 AIChE Annual Meeting. AIChE, p. 776-777 2 p. (Sustainable Engineering Forum: Core Programming Topic at the 2011 AIChE Annual Meeting; vol. 2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Effect of furfural on xylose fermentation using saccharomyces cerevisiae 424A (LNH-ST)

  Wu, C. L., Mosier, N. S., Kim, J. H., Adamec, J., Ho, N. W. Y. & Sedlak, M., 2011, Sustainable Engineering Forum: Core Programming Topic at the 2011 AIChE Annual Meeting. AIChE, p. 775 1 p. (Sustainable Engineering Forum: Core Programming Topic at the 2011 AIChE Annual Meeting; vol. 2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Grain sorghum lipids: Extraction, characterization, and health potential

  Lee, B. H., Weller, C. L., Cuppett, S. L., Carr, T. P., Walter, J., Martínez, I. & Schlegel, V. L., 2011, Advances in Cereal Science: Implications to Food Processing and Health Promotion. American Chemical Society, p. 149-170 22 p. (ACS Symposium Series; vol. 1089).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Lipids 100%
  • Health 54%
  • Lipid 51%
  • Unsaturated fatty acids 31%
  • Cholesterol 28%
  4 Scopus citations
• 2010

  Computational simulation of the deformation of neuronal cells

  Cao, G., Zhou, Y., Lee, J. S., Lim, J. Y., Ganpule, S. & Chandra, N., 2010, ASME 2010 International Mechanical Engineering Congress and Exposition, IMECE 2010. p. 179-180 2 p. (ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE); vol. 2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Neurons 100%
  • Confocal microscopy 19%
  • Finite element method 16%
  • Geometry 16%
  • Substrates 9%

• Mechanical model of neuronal function loss

  Cao, G., Zhou, Y., Lee, J. S., Lim, J. Y. & Chandra, N., 2010, ASME 2010 International Mechanical Engineering Congress and Exposition, IMECE 2010. p. 185-186 2 p. (ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE); vol. 2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
• 2009

  Use of average mutual information for studying changes in HIV populations

  Sayood, K., Hoffman, F. & Wood, C., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3861-3864 4 p. 5332579. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • HIV 100%
  • Amino acids 86%
  • Viruses 84%
  • Bioinformatics 79%
  • Genes 69%
  3 Scopus citations
• 2008

  Development of fluorescent contrast agents for optical imaging of mouse disease models

  Kovar, J., Simpson, M., Schutz-Geschwender, A., Xu, X., Volcheck, W. M., Sevickmuraca, E. & Olive, D. M., 2008, Molecular Probes for Biomedical Applications II. 686707. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6867).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • IRDye 800CW 100%
  • 2-Deoxy-D-Glucose 84%
  • Contrast Medium 58%
  • Optical Imaging 57%
  • Fluorescent Dyes 55%
• 2007

  AffyMiner - A tool for significant gene mining in affymetrix GeneChip microarray data

  Lu, G., Nguyen, T., Xia, Y., Wang, Z. & Fromm, M., 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. 4076628. (Proceedings of the Annual Hawaii International Conference on System Sciences).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Microarrays 100%
  • Genes 83%
  • Ontology 14%
  • Molecular biology 11%
  • Experiments 6%

• Nickel enzymes involved in catalyzing the reduction of CO2 to methane and acetic acid

  Ragsdale, S. W., Kunz, R. C., Dey, M., Seravalli, J., Brabec, B., Doukov, T. I. & Drennan, C. L., 2007, 233rd ACS National Meeting, Abstracts of Scientific Papers. (ACS National Meeting Book of Abstracts).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Coenzymes 100%
  • Acetic acid 91%
  • Acetyl-CoA 87%
  • Enzymes 80%
  • Oxidoreductases 80%
  1 Scopus citations
• 2006

  Construction of a full-length cDNA infectious clone of a European-like type 1 PRRSV isolated in the U.S.

  Fang, Y., Faaberg, K. S., Rowland, R. R. R., Christopher-Hennings, J., Pattnaik, A. K., Osorio, F. & Nelson, E. A., 2006, Advances in Experimental Medicine and Biology. Vol. 581. p. 605-608 4 p. (Advances in Experimental Medicine and Biology; vol. 581).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Construction of a full-length cDNA infectious clone of a European-like type 1 PRRSV isolated in the U.S.

  Fang, Y., Faaberg, K. S., Rowland, R. R. R., Christopher-Hennings, J., Pattnaik, A. K., Osorio, F. & Nelson, E. A., 2006, The Nidoviruses: Toward Control of SARS and other Nidovirus Diseases. Springer New York, p. 605-608 4 p. (Advances in Experimental Medicine and Biology; vol. 581).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
  11 Scopus citations
• 2005

  Using databases and computational techniques to infer the function of novel proteins

  Ramanathan, V., Mercier, K. A., Powers, R. & Revesz, P. Z., 2005, 2005 IEEE International Conference on Electro Information Technology. 1626981. (2005 IEEE International Conference on Electro Information Technology; vol. 2005).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nuclear magnetic resonance 100%
  • Proteins 91%
  • Protein Binding 27%
  • Nuclear magnetic resonance spectroscopy 25%
  • Genomics 17%
  1 Scopus citations
• 2003

  A prototype for multiple whole genome alignment

  Deogun, J. S., Ma, F., Yang, J. & Benson, A., 2003, Proceedings of the 36th Annual Hawaii International Conference on System Sciences, HICSS 2003. Sprague, R. H. (ed.). Institute of Electrical and Electronics Engineers Inc., 1174803. (Proceedings of the 36th Annual Hawaii International Conference on System Sciences, HICSS 2003).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Genomics 100%
  • Microorganisms 38%
  • Decomposition 23%
  2 Scopus citations

• Involvement of the alternative oxidase (AOX) in superficial scald in apple: Isolation and sequence analysis of the apple AOX1 cDNA

  Rupasinghe, H. P. V., Almquist, K. C., Paliyath, G., Murr, D. P., Elthon, T. E. & Purvis, A. C., Dec 12 2003, XXVI International Horticultural Congress: Issues and Advances in Postharvest Horticulture. International Society for Horticultural Science, p. 481-486 6 p. (Acta Horticulturae; vol. 628).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • apples 100%
  • sequence analysis 89%
  • proteins 27%
  • skin (animal) 20%
  • Mangifera indica 16%
• 2002

  Survival and sporulation of Colletotrichum acutatum on symptomless strawberry leaves

  Leandro, L. F. S., Gleason, M. L., Wegulo, S. N. & Nutter, F. W., 2002, IV International Strawberry Symposium. International Society for Horticultural Science, p. 627-629 3 p. (Acta Horticulturae; vol. 567).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Colletotrichum acutatum 100%
  • sporulation 72%
  • strawberries 69%
  • conidia 54%
  • leaves 31%
  2 Scopus citations