College of Agricultural Sciences & Natural Resources

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2020

Aberrant energy metabolism and redox balance in seizure onset zones of epileptic patients

Grove, R. A., Madhavan, D., Boone, C. H. T., Braga, C. P., Papackova, Z., Kyllo, H., Samson, K., Simeone, K., Simeone, T., Helikar, T., Hanson, C. K. & Adamec, J., Jul 15 2020, In : Journal of Proteomics. 223, 103812.

Research output: Contribution to journalArticle

A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors

Nemet, I., Saha, P. P., Gupta, N., Zhu, W., Romano, K. A., Skye, S. M., Cajka, T., Mohan, M. L., Li, L., Wu, Y., Funabashi, M., Ramer-Tait, A. E., Naga Prasad, S. V., Fiehn, O., Rey, F. E., Tang, W. H. W., Fischbach, M. A., DiDonato, J. A. & Hazen, S. L., Mar 5 2020, In : Cell. 180, 5, p. 862-877.e22

Research output: Contribution to journalArticle

5 Scopus citations

A global database of soil nematode abundance and functional group composition

van den Hoogen, J., Geisen, S., Wall, D. H., Wardle, D. A., Traunspurger, W., de Goede, R. G. M., Adams, B. J., Ahmad, W., Ferris, H., Bardgett, R. D., Bonkowski, M., Campos-Herrera, R., Cares, J. E., Caruso, T., de Brito Caixeta, L., Chen, X., Costa, S. R., Creamer, R., da Cunha e Castro, J. M., Dam, M. & 54 others, Djigal, D., Escuer, M., Griffiths, B. S., Gutiérrez, C., Hohberg, K., Kalinkina, D., Kardol, P., Kergunteuil, A., Korthals, G., Krashevska, V., Kudrin, A. A., Li, Q., Liang, W., Magilton, M., Marais, M., Martín, J. A. R., Matveeva, E., Mayad, E. H., Mzough, E., Mulder, C., Mullin, P., Neilson, R., Nguyen, T. A. D., Nielsen, U. N., Okada, H., Rius, J. E. P., Pan, K., Peneva, V., Pellissier, L., da Silva, J. C. P., Pitteloud, C., Powers, T. O., Powers, K., Quist, C. W., Rasmann, S., Moreno, S. S., Scheu, S., Setälä, H., Sushchuk, A., Tiunov, A. V., Trap, J., Vestergård, M., Villenave, C., Waeyenberge, L., Wilschut, R. A., Wright, D. G., Keith, A. M., Yang, J. I., Schmidt, O., Bouharroud, R., Ferji, Z., van der Putten, W. H., Routh, D. & Crowther, T. W., Dec 1 2020, In : Scientific Data. 7, 1, 103.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Aldehyde dehydrogenase 3A1 confers oxidative stress resistance accompanied by altered DNA damage response in human corneal epithelial cells

Voulgaridou, G. P., Tsochantaridis, I., Tolkas, C., Franco, R., Giatromanolaki, A., Panayiotidis, M. I. & Pappa, A., Apr 2020, In : Free Radical Biology and Medicine. 150, p. 66-74 9 p.

Research output: Contribution to journalArticle

Allyl isothiocyanate regulates lysine acetylation and methylation marks in an experimental model of malignant melanoma

Mitsiogianni, M., Mantso, T., Trafalis, D. T., Vasantha Rupasinghe, H. P., Zoumpourlis, V., Franco, R., Botaitis, S., Pappa, A. & Panayiotidis, M. I., Mar 1 2020, In : European Journal of Nutrition. 59, 2, p. 557-569 13 p.

Research output: Contribution to journalArticle

1 Scopus citations

An evidence for surface expression of an immunogenic epitope of sarcoplasmic/endoplasmic reticulum calcium-ATPase2a on antigen-presenting cells from naive mice in the mediation of autoimmune myocarditis

Arumugam, R., Yalaka, B., Massilamany, C., Haider Ali, M. S. S., Lasrado, N., Jayaraja, S., Riethoven, J. J., Sun, X. & Reddy, J., Mar 2020, In : Immunobiology. 225, 2, 151896.

Research output: Contribution to journalArticle

Assessment of the Dose–Response Relationship Between Folate Exposure and Cognitive Impairment: Synthesizing Data from Documented Studies

Wang, B., Sahyoun, N. R., Shao, K., Dutta, E. & Clarke, J., Feb 1 2020, In : Risk Analysis. 40, 2, p. 276-293 18 p.

Research output: Contribution to journalArticle

Association between baseline abundance of Peptoniphilus, a Gram-positive anaerobic coccus, and wound healing outcomes of DFUs

Min, K. R., Galvis, A., Nole, K. L. B., Sinha, R., Clarke, J., Kirsner, R. S. & Ajdic, D., 2020, In : PloS one. 15, 1, e0227006.

Research output: Contribution to journalArticle

Open Access

Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men

Nguyen, L. H., Ma, W., Wang, D. D., Cao, Y., Mallick, H., Gerbaba, T. K., Lloyd-Price, J., Abu-Ali, G., Hall, A. B., Sikavi, D., Drew, D. A., Mehta, R. S., Arze, C., Joshi, A. D., Yan, Y., Branck, T., DuLong, C., Ivey, K. L., Ogino, S., Rimm, E. B. & 5 others, Song, M., Garrett, W. S., Izard, J., Huttenhower, C. & Chan, A. T., Apr 2020, In : Gastroenterology. 158, 5, p. 1313-1325 13 p.

Research output: Contribution to journalArticle

Open Access

Bipolar Nanoimpact Transients: Controlling the Redox Potential of Nanoparticles in Solution

Markham, J., Young, N. P., Batchelor-Mcauley, C. & Compton, R. G., Jun 25 2020, In : Journal of Physical Chemistry C. 124, 25, p. 14043-14053 11 p.

Research output: Contribution to journalArticle

Candidate gene expression and coding sequence variants in Warmblood horses with myofibrillar myopathy

Williams, Z. J., Velez-Irizarry, D., Petersen, J. L., Ochala, J., Finno, C. J. & Valberg, S. J., 2020, (Accepted/In press) In : Equine Veterinary Journal.

Research output: Contribution to journalArticle

Chinese sweet tea (Rubus suavissimus) polyphefnols attenuate the allergic responses in a Balb/c mouse model of egg allergy

Mine, Y., Majumder, K., Jin, Y. & Zeng, Y., Apr 2020, In : Journal of Functional Foods. 67, 103827.

Research output: Contribution to journalArticle

Open Access

Combined TLR4 and TLR9 agonists induce distinct phenotypic changes in innate immunity in vitro and in vivo

Lampe, A. T., Puniya, B. L., Pannier, A. K., Helikar, T. & Brown, D. M., Sep 2020, In : Cellular Immunology. 355, 104149.

Research output: Contribution to journalArticle

Compositional and immunogenic evaluation of fractionated wheat beers using mass spectrometry

Cao, W., Baumert, J. L. & Downs, M. L., Dec 15 2020, In : Food Chemistry. 333, 127379.

Research output: Contribution to journalArticle

Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle

Rice, E. S., Koren, S., Rhie, A., Heaton, M. P., Kalbfleisch, T. S., Hardy, T., Hackett, P. H., Bickhart, D. M., Rosen, B. D., Ley, B. V., Maurer, N. W., Green, R. E., Phillippy, A. M., Petersen, J. L. & Smith, T. P. L., Apr 6 2020, In : GigaScience. 9, 4, giaa029.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Covalent Modification of the Flavin in Proline Dehydrogenase by Thiazolidine-2-Carboxylate

Campbell, A. C., Becker, D. F., Gates, K. S. & Tanner, J. J., Apr 17 2020, In : ACS chemical biology. 15, 4, p. 936-944 9 p.

Research output: Contribution to journalArticle

Deletion of fatty acid transport protein 2 (FATP2) in the mouse liver changes the metabolic landscape by increasing the expression of PPARα-regulated genes

Perez, V. M., Gabell, J., Behrens, M., Wase, N., DiRusso, C. C. & Black, P. N., Apr 24 2020, In : Journal of Biological Chemistry. 295, 17, p. 5737-5750 14 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Determinations of the peroxidative susceptibilities of cod liver oils by a newly-developed 1H NMR-based method: Resistance of an antioxidant-fortified product isolated from pre-fermented sources

Percival, B. C., Zbasnik, R., Schlegel, V., Edgar, M., Zhang, J. & Grootveld, M., Feb 12 2020, In : BMC Research Notes. 13, 1, 73.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Development of feed composition tables using a statistical screening procedure

Tran, H., Schlageter-Tello, A., Caprez, A., Miller, P. S., Hall, M. B., Weiss, W. P. & Kononoff, P. J., Apr 2020, In : Journal of Dairy Science. 103, 4, p. 3786-3803 18 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Development of Prolamin-Based Composite Nanoparticles for Controlled Release of Sulforaphane

Wang, L., Rose, D., Rao, P. & Zhang, Y., 2020, (Accepted/In press) In : Journal of Agricultural and Food Chemistry.

Research output: Contribution to journalArticle

2 Scopus citations

Divergent phenotypic response of rice accessions to transient heat stress during early seed development

Paul, P., Dhatt, B. K., Sandhu, J., Hussain, W., Irvin, L., Morota, G., Staswick, P. & Walia, H., Jan 1 2020, In : Plant Direct. 4, 1, e00196.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Effectiveness and Functional Mechanism of a Multicomponent Sanitizer against Biofilms Formed by Escherichia coli O157:H7 and Five Salmonella Serotypes Prevalent in the Meat Industry

Wang, R., Zhou, Y., Kalchayanand, N., Harhay, D. M. & Wheeler, T. L., Apr 2020, In : Journal of food protection. 83, 4, p. 568-575 8 p.

Research output: Contribution to journalArticle

Effect of dietary medium-chain fatty acids on nursery pig growth performance, fecal microbial composition, and mitigation properties against porcine epidemic diarrhea virus following storage

Gebhardt, J. T., Thomson, K. A., Woodworth, J. C., Dritz, S. S., Tokach, M. D., Derouchey, J. M., Goodband, R. D., Jones, C. K., Cochrane, R. A., Niederwerder, M. C., Fernando, S., Abbas, W. & Burkey, T. E., Jan 2 2020, In : Journal of animal science. 98, 1, skz358.

Research output: Contribution to journalArticle

3 Scopus citations

Effect of heat treatment on the conformational stability of intact and cleaved forms of the peanut allergen Ara h 6 in relation to its IgE-binding potency

de Jongh, H. H. J., de Jong, G. A. H., Apostolovic, D., Taylor, S. L., Baumert, J. L. & Koppelman, S. J., Oct 1 2020, In : Food Chemistry. 326, 127027.

Research output: Contribution to journalArticle

Elucidating the Regulon of a Fur-like Protein in Mycobacterium avium subsp. paratuberculosis (MAP)

Shoyama, F. M., Janetanakit, T., Bannantine, J. P., Barletta, R. G. & Sreevatsan, S., Apr 23 2020, In : Frontiers in Microbiology. 11, 598.

Research output: Contribution to journalArticle

Open Access

Evaluating the potential allergenicity of dietary proteins using model strong to non-allergenic proteins in germ-free mice

Marsteller, N. L., Goodman, R. E., Andoh-Kumi, K., Luan, F., Bøgh, K. L. & Baumert, J., Jul 2020, In : Food and Chemical Toxicology. 141, 111398.

Research output: Contribution to journalArticle

Evaluation of non-uniform sampling 2D1H–13C HSQC spectra for semi-quantitative metabolomics

Zhang, B., Powers, R. & O’Day, E. M., May 2020, In : Metabolites. 10, 5, 203.

Research output: Contribution to journalArticle

Open Access

Evaluation of N-terminal labeling mass spectrometry for characterization of partially hydrolyzed gluten proteins

Cao, W., Baumert, J. L. & Downs, M. L., Jan 6 2020, In : Journal of Proteomics. 210, 103538.

Research output: Contribution to journalArticle

Evaluations of the peroxidative susceptibilities of cod liver oils by a1H NMR analysis strategy: Peroxidative resistivity of a natural collagenous and biogenic amine-rich fermented product

Percival, B. C., Wann, A., Zbasnik, R., Schlegel, V., Edgar, M., Zhang, J., Ampem, G., Wilson, P., Le Gresley, A., Naughton, D. & Grootveld, M., Mar 2020, In : Nutrients. 12, 3, 753.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Evidence for anti-viral effects of complete freund’s adjuvant in the mouse model of enterovirus infection

Gangaplara, A., Massilamany, C., Lasrado, N., Steffen, D. & Reddy, J., Sep 2020, In : Vaccines. 8, 3, p. 1-9 9 p., 364.

Research output: Contribution to journalArticle

Open Access

Fermented foods in a global age: East meets West

Tamang, J. P., Cotter, P. D., Endo, A., Han, N. S., Kort, R., Liu, S. Q., Mayo, B., Westerik, N. & Hutkins, R., Jan 1 2020, In : Comprehensive Reviews in Food Science and Food Safety. 19, 1, p. 184-217 34 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Formation and characterization of lipid droplets of the bovine corpus luteum

Talbott, H. A., Plewes, M. R., Krause, C., Hou, X., Zhang, P., Rizzo, W. B., Wood, J. R., Cupp, A. S. & Davis, J. S., Dec 1 2020, In : Scientific reports. 10, 1, 11287.

Research output: Contribution to journalArticle

Open Access

Functionally annotating regulatory elements in the equine genome using histone mark chip-seq

Kingsley, N. B., Kern, C., Creppe, C., Hales, E. N., Zhou, H., Kalbfleisch, T. S., Macleod, J. N., Petersen, J. L., Finno, C. J. & Bellone, R. R., Jan 2020, In : Genes. 11, 1, 3.

Research output: Contribution to journalArticle

Open Access

Genetic diversity of potassium ion channel proteins encoded by chloroviruses that infect chlorella heliozoae

Murry, C. R., Agarkova, I. V., Ghosh, J. S., Fitzgerald, F. C., Carlson, R. M., Hertel, B., Kukovetz, K., Rauh, O., Thiel, G. & Van Etten, J. L., Jun 2020, In : Viruses. 12, 6, 678.

Research output: Contribution to journalArticle

Open Access

Genome sequences of uncommon Shiga toxin-producing escherichia coli serotypes

Abdalhamid, B., McCutchen, E. L., Iwen, P. C., Gomes-Neto, J. C., Benson, A. K. & Hinrichs, S. H., Mar 5 2020, In : Microbiology Resource Announcements. 9, 10, e01496-19.

Research output: Contribution to journalArticle

Open Access

Healthy pregnancies and essential fats: Focus group discussions with Zambian women on dietary need and acceptability of a novel RUSF containing fish oil DHA

Chunda-Liyoka, C., Lubeya, M. K., Imakando, M., Kisling, S., Majid, S., Willis, M. S., Wood, C., Kankasa, C. & Dirusso, C. C., Feb 10 2020, In : BMC Pregnancy and Childbirth. 20, 1, 93.

Research output: Contribution to journalArticle

Open Access

HIV-1 subtypes and drug resistance mutations among female sex workers varied in different cities and regions of the Democratic Republic of Congo

Kwon, E. H., Musema, G. M. A., Boelter, J., Townsend, S., Tshala-Katumbay, D., Kayembe, P. K., West, J. & Wood, C., 2020, In : PloS one. 15, 2, e0228670.

Research output: Contribution to journalArticle

Open Access

Identification of immunogenic epitopes that permit the detection of antigen-specific T cell responses in multiple serotypes of group B coxsackievirus infections

Lasrado, N., Gangaplara, A., Arumugam, R., Massilamany, C., Pokal, S., Zhou, Y., Xiang, S. H., Steffen, D. & Reddy, J., 2020, In : Viruses. 12, 3, 347.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Integration of single nucleotide variants and whole-genome DNA methylation profiles for classification of rheumatoid arthritis cases from controls

Amiri Roudbar, M., Mohammadabadi, M. R., Ayatollahi Mehrgardi, A., Abdollahi-Arpanahi, R., Momen, M., Morota, G., Brito Lopes, F., Gianola, D. & Rosa, G. J. M., May 1 2020, In : Heredity. 124, 5, p. 658-674 17 p.

Research output: Contribution to journalArticle

Intimate attachment of escherichia coli o157:H7 to urinary bladder epithelium in the gnotobiotic piglet model

Moxley, R. A., Bargar, T. W., Kachman, S. D., Baker, D. R. & Francis, D. H., Feb 2020, In : Microorganisms. 8, 2, 263.

Research output: Contribution to journalArticle

Open Access

In vitro digestibility of proteins from historical and modern wheat cultivars

Gulati, P., Brahma, S., Graybosch, R. A., Chen, Y. & Rose, D. J., Apr 1 2020, In : Journal of the Science of Food and Agriculture. 100, 6, p. 2579-2584 6 p.

Research output: Contribution to journalArticle

Kinesin Kif2C in regulation of DNA double strand break dynamics and repair

Zhu, S., Paydar, M., Wang, F., Li, Y., Wang, L., Barrette, B., Bessho, T., Kwok, B. H. & Peng, A., Jan 2020, In : eLife. 9, e53402.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Lack of CD8+ T-cell co-localization with Kaposi's sarcoma-associated herpesvirus infected cells in Kaposi's sarcoma tumors

Lidenge, S. J., Tso, F. Y., Ngalamika, O., Kolape, J., Ngowi, J. R., Mwaiselage, J., Wood, C. & West, J. T., Apr 28 2020, In : Oncotarget. 11, 17, p. 1556-1572 17 p.

Research output: Contribution to journalArticle

Open Access

Long noncoding RNA SNHG12 integrates a DNA-PK–mediated DNA damage response and vascular senescence

Haemmig, S., Yang, D., Sun, X., Das, D., Ghaffari, S., Molinaro, R., Chen, L., Deng, Y., Freeman, D., Moullan, N., Tesmenitsky, Y., Wara, A. K. M. K., Simion, V., Shvartz, E., Lee, J. F., Yang, T., Sukova, G., Marto, J. A., Stone, P. H., Lee, W. L. & 3 others, Auwerx, J., Libby, P. & Feinberg, M. W., Feb 19 2020, In : Science translational medicine. 12, 532, eaaw1868.

Research output: Contribution to journalArticle

Lubrication characteristics of wax esters from oils produced by a genetically-enhanced oilseed crop

Shirani, A., Joy, T., Lager, I., Yilmaz, J. L., Wang, H. L., Jeppson, S., Cahoon, E. B., Chapman, K., Stymne, S. & Berman, D., Jun 2020, In : Tribology International. 146, 106234.

Research output: Contribution to journalArticle

Luteinizing hormone regulates the phosphorylation and localization of the mitochondrial effector dynamin-related protein-1 (DRP1) and steroidogenesis in the bovine corpus luteum

Plewes, M. R., Hou, X., Talbott, H. A., Zhang, P., Wood, J. R., Cupp, A. S. & Davis, J. S., Apr 1 2020, In : FASEB Journal. 34, 4, p. 5299-5316 18 p.

Research output: Contribution to journalArticle

Open Access

Manipulation of the molecular spin crossover transition of Fe(H2B(pz)2)2(bipy) by addition of polar molecules

Costa, P. S., Hao, G., N'Diaye, A. T., Routaboul, L., Braunstein, P., Zhang, X., Zhang, J., Ekanayaka, T. K., Shi, Q. Y., Schlegel, V., Doudin, B., Enders, A. & Dowben, P. A., 2020, In : Journal of Physics Condensed Matter. 32, 3, 034001.

Research output: Contribution to journalArticle

Metabolic changes associated with adaptive resistance to daptomycin in Streptococcus mitis-oralis

Parrett, A., Reed, J. M., Gardner, S. G., Mishra, N. N., Bayer, A. S., Powers, R. & Somerville, G. A., Jun 15 2020, In : BMC microbiology. 20, 1, 162.

Research output: Contribution to journalArticle

Open Access

Metabolic engineering of soybean seeds for enhanced vitamin E tocochromanol content and effects on oil antioxidant properties in polyunsaturated fatty acid-rich germplasm

Konda, A. R., Nazarenus, T. J., Nguyen, H., Yang, J., Gelli, M., Swenson, S., Shipp, J. M., Schmidt, M. A., Cahoon, R. E., Ciftci, O. N., Zhang, C., Clemente, T. E. & Cahoon, E. B., Jan 2020, In : Metabolic Engineering. 57, p. 63-73 11 p.

Research output: Contribution to journalArticle

Metalloproteomic approach of mercury-binding proteins in liver and kidney tissues of Plagioscion squamosissimus (corvina) and Colossoma macropomum (tambaqui) from Amazon region: Possible identification of mercury contamination biomarkers

Bittarello, A. C., Vieira, J. C. S., Braga, C. P., da Cunha Bataglioli, I., de Oliveira, G., Rocha, L. C., Zara, L. F., Buzalaf, M. A. R., de Oliveira, L. C. S., Adamec, J. & de Magalhães Padilha, P., Apr 1 2020, In : Science of the Total Environment. 711, 134547.

Research output: Contribution to journalArticle

3 Scopus citations