Research Output

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2020

Clinical evaluation

Armitage, J. O. & Friedberg, J. W., 2020, Hematologic Malignancies. Springer, p. 99-111 13 p. (Hematologic Malignancies).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clinical Manifestations of Insulin Resistance in Youth

Chen, M. E. & Hannon, T. S., 2020, Contemporary Endocrinology. Humana Press Inc., p. 3-17 15 p. (Contemporary Endocrinology).

Research output: Chapter in Book/Report/Conference proceedingChapter

EPCES and EPSVR: Prediction of B-Cell antigenic epitopes on protein surfaces with conformational information

Liang, S., Zheng, D., Yao, B. & Zhang, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 289-297 9 p. (Methods in Molecular Biology; vol. 2131).

Research output: Chapter in Book/Report/Conference proceedingChapter

Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope

Vellichirammal, N. N., Albahrani, A., Li, Y. & Guda, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 13-25 13 p. (Methods in Molecular Biology; vol. 2079).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neutrophils in the Tumor Microenvironment

Wu, L., Saxena, S. & Singh, R. K., 2020, Advances in Experimental Medicine and Biology. Springer, p. 1-20 20 p. (Advances in Experimental Medicine and Biology; vol. 1224).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Pancreatic Stellate Cells: The Key Orchestrator of The Pancreatic Tumor Microenvironment

Thomas, D. & Radhakrishnan, P., 2020, Advances in Experimental Medicine and Biology. Springer, p. 57-70 14 p. (Advances in Experimental Medicine and Biology; vol. 1234).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

SVMTriP: A method to predict B-Cell linear antigenic epitopes

Yao, B., Zheng, D., Liang, S. & Zhang, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 299-307 9 p. (Methods in Molecular Biology; vol. 2131).

Research output: Chapter in Book/Report/Conference proceedingChapter

Targeting endoplasmic reticulum stress and autophagy as therapeutic approaches for neurological diseases

Thangaraj, A., Sil, S., Tripathi, A., Chivero, E. T., Periyasamy, P. & Buch, S., 2020, International Review of Cell and Molecular Biology. Kepp, O. & Galluzzi, L. (eds.). Elsevier Inc., p. 285-325 41 p. (International Review of Cell and Molecular Biology; vol. 350).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Aberrant brain dynamics in neuroHIV: Evidence from magnetoencephalographic (MEG) imaging

Wilson, T. W., Lew, B. J., Spooner, R. K., Rezich, M. T. & Wiesman, A. I., 2019, Progress in Molecular Biology and Translational Science. Becker, J. T. & Cohen, A. D. (eds.). Elsevier B.V., p. 285-320 36 p. (Progress in Molecular Biology and Translational Science; vol. 165).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Animal models of cancer-associated cachexia

Shukla, S. K. & Singh, P. K., Apr 17 2019, Animal Models in Cancer Drug Discovery. Elsevier, p. 59-74 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemical and cellular assays to assess the effects of acetylation on base excision repair enzymes

Roychoudhury, S., Pramanik, S., Harris, H. L. & Bhakat, K. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 191-206 16 p. (Methods in Molecular Biology; vol. 1983).

Research output: Chapter in Book/Report/Conference proceedingChapter

Changes in Parameters of Aqueous Humor Dynamics Throughout Life

Toris, C. B., Tye, G. & Pattabiraman, P., 2019, Modeling and Simulation in Science, Engineering and Technology. Birkhauser, p. 161-190 30 p. (Modeling and Simulation in Science, Engineering and Technology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Construction of a Sequence-Defined Transposon Mutant Library in Staphylococcus aureus

Endres, J. L., Yajjala, V. K., Fey, P. D. & Bayles, K. W., 2019, Methods in Molecular Biology. Humana Press Inc., p. 29-37 9 p. (Methods in Molecular Biology; vol. 2016).

Research output: Chapter in Book/Report/Conference proceedingChapter

Critical Care Viral Infections

O'Horo, J. C. & Cawcutt, K. A., 2019, Critical Care Nephrology: Third Edition. Elsevier Inc., p. 560-567.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

Design of antimicrobial peptides: Progress made with human cathelicidin LL-37

Wang, G., Narayana, J. L., Mishra, B., Zhang, Y., Wang, F., Wang, C., Zarena, D., Lushnikova, T. & Wang, X., 2019, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 215-240 26 p. (Advances in Experimental Medicine and Biology; vol. 1117).

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Scopus citations

Evaluating the metabolic alterations in pancreatic cancer

Dasgupta, A., Shukla, S. K., Gunda, V., King, R. J. & Singh, P. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 221-228 8 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

Growth and development in gymnastics

Ritchie, L. K., Ronshaugen, N. & Sygo, J., Oct 8 2019, Gymnastics Medicine: Evaluation, Management and Rehabilitation. Springer International Publishing, p. 55-73 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

In situ AFM analysis investigating disassembly of DNA nanoparticles and nanofilms

Zou, Y., Wan, L., Blacklock, J., Xie, L., Carroll, S., Oupicky, D. & Mao, G., 2019, Methods in Molecular Biology. Humana Press Inc., p. 199-209 11 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter

Management of Infection in Patients With Kidney Transplant

Cawcutt, K. A. & Zimmer, A., 2019, Critical Care Nephrology: Third Edition. Elsevier Inc., p. 552-560.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular and physiological evaluation of pancreatic cancer-induced cachexia

Shukla, S. K., Dasgupta, A., Mulder, S. E. & Singh, P. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 321-333 13 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Mouse models of pancreatic cancer: An ever-emerging arm of cancer drug discovery

Ganguly, K., Batra, S. K. & Kaur, S., Apr 17 2019, Animal Models in Cancer Drug Discovery. Elsevier, p. 249-266 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plasmodium falciparum in vitro drug resistance selections and gene editing

Ng, C. L. & Fidock, D. A., 2019, Methods in Molecular Biology. Humana Press Inc., p. 123-140 18 p. (Methods in Molecular Biology; vol. 2013).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Proximity Labeling of the Chlamydia trachomatis Inclusion Membrane

Olson, M. G., Jorgenson, L. M., Widner, R. E. & Rucks, E. A., 2019, Methods in Molecular Biology. Humana Press Inc., p. 245-278 34 p. (Methods in Molecular Biology; vol. 2042).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Regulating inflammatory cytokines in the diabetic heart

Yadav, S. K., Kambis, T. N. & Mishra, P. K., Jan 1 2019, Oxidative Stress in Heart Diseases. Springer Singapore, p. 427-436 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthesis of bioreducible polycations with controlled topologies

You, Y. Z., Yan, J. J., Yu, F., Yu, Z. Q. & Oupicky, D., 2019, Methods in Molecular Biology. Humana Press Inc., p. 27-38 12 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter

Thermodynamic contributions for the inclusion of bulges and mismatches in dna hairpin loops

Shikiya, R. & Marky, L. A., Jun 5 2019, A Closer Look at Calorimetry. Nova Science Publishers, Inc., p. 31-60 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Training as an intervention to decrease medical record abstraction errors multicenter studies

Zozus, M. N., Young, L. W., Simon, A. E., Garza, M., Lawrence, L., Ounpraseuth, S. T., Bledsoe, M., Newman-Norlund, S., Jarvis, J. D., McNally, M., Harris, K. R., McCulloh, R., Aikman, R., Cox, S., Malloch, L., Walden, A., Snowden, J., Chedjieu, I. M., Wicker, C. A., Atkins, L. & 1 others, Devlin, L. A., 2019, Improving Usability, Safety and Patient Outcomes with Health Information Technology: From Research to Practice. Kuo, A. M-H., Kushniruk, A., Lau, F., Borycki, E. M., Bliss, G., Monkman, H., Roudsari, A. V., Bartle-Clar, J. A. & Courtney, K. L. (eds.). IOS Press, p. 526-539 14 p. (Studies in Health Technology and Informatics; vol. 257).

Research output: Chapter in Book/Report/Conference proceedingChapter

Training standards: ASMBS and fellowship council

Daly, S. C. & McBride, C., Oct 15 2019, Quality in Obesity Treatment. Springer International Publishing, p. 333-337 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

5-fluoropyrimidines

Ryan, D. P., Grem, J. & Chabner, B. A., Jan 1 2018, Cancer Chemotherapy, Immunotherapy and Biotherapy: Principles and Practice, Sixth Edition. Wolters Kluwer Health, p. 114-135 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

A bacterial adenylate cyclase-based two-hybrid system compatible with gateway ® cloning

Olson, M. G., Goldammer, M., Gauliard, E., Ladant, D. & Ouellette, S. P., 2018, Methods in Molecular Biology. Humana Press Inc., p. 75-96 22 p. (Methods in Molecular Biology; vol. 1794).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Advanced Therapies. In Husain A.M, & Tran T.T (Eds.), Department of Veteran Affairs Epilepsy Manual. Second Edition

Datta, P., Garga, N. & Yoshii-Contreras, J., 2018, Department of Veteran Affairs Epilepsy Manual. Second Edition. Department of Vetrans Affairs, p. 183-198

Research output: Chapter in Book/Report/Conference proceedingChapter

Analysis of chromatin interactions mediated by specific architectural proteins in drosophila cells

Ando-Kuri, M., Rivera, I. S. M., Rowley, M. J. & Corces, V. G., 2018, Methods in Molecular Biology. Humana Press Inc., p. 239-256 18 p. (Methods in Molecular Biology; vol. 1766).

Research output: Chapter in Book/Report/Conference proceedingChapter

Burnout, substance abuse, and suicide: A surgical perspective

Are, C., Caniglia, A. J., Sharma, A. & Gold, J. P., Jan 1 2018, Practical Ethics for the Surgeon. Wolters Kluwer Health Adis (ESP), p. 229-262 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cardiac toxicity

Yahalom, J. & Lunning, M. A., Nov 16 2018, DeVita, Hellman, and Rosenberg's Cancer: Principles & Practice of Oncology. Wolters Kluwer Health Pharma Solutions (Europe) Ltd, p. 2120-2128 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cardiovascular manifestations in duchenne/becker muscular dystrophy and other primary myopathies

Stoller, D. A. & Mammen, P. P. A., Jan 17 2018, Cardiovascular Genetics and Genomics: Principles and Clinical Practice. Springer International Publishing, p. 523-543 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carotid Disease

Suh, M. K. & Baxter, B. T., 2018, Abernathy's Surgical Secrets: Seventh Edition. Elsevier Inc., p. 345-348 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

CD44 targeted lipid nanoparticles for microRNA therapy

Hayward, S. L. & Kidambi, S., 2018, Methods in Molecular Biology. Humana Press Inc., p. 95-109 15 p. (Methods in Molecular Biology; vol. 1831).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chronic Heart Failure Abolishes Circadian Rhythms in Resting and Chemoreflex Breathing

Lewis, R., Hackfort, B. T. & Schultz, H. D., 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 129-136 8 p. (Advances in Experimental Medicine and Biology; vol. 1071).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Ciliary dynein dysfunction caused by chronic alcohol exposure

Price, M., Yang, F., Sisson, J. H. & Wirschell, M., 2018, Dyneins: Dynein Mechanics, Dysfunction, and Disease: Second Edition. Elsevier, Vol. 2. p. 402-417 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Diagnosis and treatment of non-hodgkin’s lymphoma of adults

Crockett, D. G., Armitage, J. O. & Vose, J. M., Jan 1 2018, Neoplastic Diseases of the Blood. Springer International Publishing, p. 951-973 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Dissecting regulatory mechanisms using mouse fetal liver-derived erythroid cells

McIver, S. C., Hewitt, K. J., Gao, X., Mehta, C., Zhang, J. & Bresnick, E. H., 2018, Methods in Molecular Biology. Humana Press Inc., p. 67-89 23 p. (Methods in Molecular Biology; vol. 1698).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Emerging Roles of Nitric Oxide Synthase in Bacterial Physiology

Hutfless, E. H., Chaudhari, S. S. & Thomas, V. C., Jan 1 2018, Nitric Oxide and Other Small Signalling Molecules. Poole, R. K. (ed.). Academic Press, p. 147-191 45 p. (Advances in Microbial Physiology; vol. 72).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Evaluating the metabolic impact of hypoxia on pancreatic cancer cells

Murthy, D., Vernucci, E., Goode, G., Abrego, J. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 81-93 13 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Evaluation of macrophage polarization in pancreatic cancer microenvironment under hypoxia

Attri, K. S., Mehla, K. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 265-276 12 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Gynecomastia

Kapadia, C. R. & González-García, Z. M., Jan 1 2018, The 5-Minute Pediatric Consult, 8th Edition. Wolters Kluwer Health, p. 410-411 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hiatal hernia and reflux following bariatric surgery

Hennings, D. L., McLaren, P. J., Mattar, S. G. & Oleynikov, D., Apr 20 2018, A Mastery Approach to Complex Esophageal Diseases. Springer International Publishing, p. 49-59 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hilar cholangiocarcinoma

Reames, B. N. & Pawlik, T. M., Sep 11 2018, Surgical Diseases of the Pancreas and Biliary Tree. Springer Singapore, p. 345-389 45 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hormone effects on follicular growth and differentiation

Kim, S. Y., Luan, Y. & Woodruff, T. K., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 172-175 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hypoxia-induced metabolomic alterations in pancreatic cancer cells

Gunda, V., Kumar, S., Dasgupta, A. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 95-105 11 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

Hypoxia-mediated in vivo tumor glucose uptake measurement and analysis

Shukla, S. K., Mulder, S. E. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-113 7 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter