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2020

Sterile α-motif domain requirement for cellular signaling and survival

Ray, S., Chee, L., Matson, D. R., Palermo, N. Y., Bresnick, E. H. & Hewitt, K. J., May 15 2020, In : Journal of Biological Chemistry. 295, 20, p. 7113-7125 13 p.

Research output: Contribution to journalArticle

Open Access

Targeted Amino Acid Substitution Overcomes Scale-Up Challenges with the Human C5a-Derived Decapeptide Immunostimulant EP67

Alshammari, A. M., Smith, D. D., Parriott, J., Stewart, J. P., Curran, S. M., McCulloh, R. J., Barry, P. A., Iyer, S. S., Palermo, N., Phillips, J. A., Dong, Y., Ronning, D. R., Vennerstrom, J. L., Sanderson, S. D. & Vetro, J. A., May 8 2020, In : ACS infectious diseases. 6, 5, p. 1169-1181 13 p.

Research output: Contribution to journalArticle

2019

A microfluidic platform for stimulating chondrocytes with dynamic compression

Lee, D., Erickson, A., Dudley, A. T. & Ryu, S., 2019, In : Journal of Visualized Experiments. 2019, 151, e59676.

Research output: Contribution to journalArticle

First step towards larger DNA-based assemblies of fluorescent silver nanoclusters: Template design and detailed characterization of optical properties

Yourston, L. E., Lushnikov, A. Y., Shevchenko, O. A., Afonin, K. A. & Krasnoslobodtsev, A. V., Apr 2019, In : Nanomaterials. 9, 4, 613.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Label-free characterization of exosome via surface enhanced Raman spectroscopy for the early detection of pancreatic cancer

Carmicheal, J., Hayashi, C., Huang, X., Liu, L., Lu, Y., Krasnoslobodtsev, A., Lushnikov, A., Kshirsagar, P. G., Patel, A., Jain, M., Lyubchenko, Y. L., Lu, Y., Batra, S. K. & Kaur, S., Feb 2019, In : Nanomedicine: Nanotechnology, Biology, and Medicine. 16, p. 88-96 9 p.

Research output: Contribution to journalArticle

12 Scopus citations

Mechanical Stimulation of Growth Plate Chondrocytes: Previous Approaches and Future Directions

Lee, D., Erickson, A., Dudley, A. T. & Ryu, S., Nov 1 2019, In : Experimental Mechanics. 59, 9, p. 1261-1274 14 p.

Research output: Contribution to journalArticle

1 Scopus citations

Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: A multi-center evaluation

Gurumurthy, C. B., O'Brien, A. R., Quadros, R. M., Adams, J., Alcaide, P., Ayabe, S., Ballard, J., Batra, S. K., Beauchamp, M. C., Becker, K. A., Bernas, G., Brough, D., Carrillo-Salinas, F., Chan, W., Chen, H., Dawson, R., Demambro, V., D'Hont, J., Dibb, K. M., Eudy, J. D. & 93 others, Gan, L., Gao, J., Gonzales, A., Guntur, A. R., Guo, H., Harms, D. W., Harrington, A., Hentges, K. E., Humphreys, N., Imai, S., Ishii, H., Iwama, M., Jonasch, E., Karolak, M., Keavney, B., Khin, N. C., Konno, M., Kotani, Y., Kunihiro, Y., Lakshmanan, I., Larochelle, C., Lawrence, C. B., Li, L., Lindner, V., Liu, X. D., Lopez-Castejon, G., Loudon, A., Lowe, J., Jerome-Majewska, L. A., Matsusaka, T., Miura, H., Miyasaka, Y., Morpurgo, B., Motyl, K., Nabeshima, Y. I., Nakade, K., Nakashiba, T., Nakashima, K., Obata, Y., Ogiwara, S., Ouellet, M., Oxburgh, L., Piltz, S., Pinz, I., Ponnusamy, M. P., Ray, D., Redder, R. J., Rosen, C. J., Ross, N., Ruhe, M. T., Ryzhova, L., Salvador, A. M., Alam, S. S., Sedlacek, R., Sharma, K., Smith, C., Staes, K., Starrs, L., Sugiyama, F., Takahashi, S., Tanaka, T., Trafford, A. W., Uno, Y., Vanhoutte, L., Vanrockeghem, F., Willis, B. J., Wright, C. S., Yamauchi, Y., Yi, X., Yoshimi, K., Zhang, X., Zhang, Y., Ohtsuka, M., Das, S., Garry, D. J., Hochepied, T., Thomas, P., Parker-Thornburg, J., Adamson, A. D., Yoshiki, A., Schmouth, J. F., Golovko, A., Thompson, W. R., Lloyd, K. C. K., Wood, J. A., Cowan, M., Mashimo, T., Mizuno, S., Zhu, H., Kasparek, P., Liaw, L., Miano, J. M. & Burgio, G., Aug 26 2019, In : Genome biology. 20, 1, 171.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Splice-altering variant in COL11A1 as a cause of nonsyndromic hearing loss DFNA37

Booth, K. T., Askew, J. W., Talebizadeh, Z., Huygen, P. L. M., Eudy, J., Kenyon, J., Hoover, D., Hildebrand, M. S., Smith, K. R., Bahlo, M., Kimberling, W. J., Smith, R. J. H., Azaiez, H. & Smith, S. D., Apr 1 2019, In : Genetics in Medicine. 21, 4, p. 948-954 7 p.

Research output: Contribution to journalArticle

10 Scopus citations
2018

3D Bioprinting of Breast Cancer Models for Drug Resistance Study

Wang, Y., Shi, W., Kuss, M., Mirza, S., Qi, D., Krasnoslobodtsev, A. V., Zeng, J., Band, H., Band, V. & Duan, B., Dec 10 2018, In : ACS Biomaterials Science and Engineering. 4, 12, p. 4401-4411 11 p.

Research output: Contribution to journalArticle

11 Scopus citations

A Tunable, Three-Dimensional in Vitro Culture Model of Growth Plate Cartilage Using Alginate Hydrogel Scaffolds

Erickson, A. G., Laughlin, T. D., Romereim, S. M., Sargus-Patino, C. N., Pannier, A. K. & Dudley, A. T., Jan 2018, In : Tissue Engineering - Part A. 24, 1-2, p. 94-105 12 p.

Research output: Contribution to journalArticle

4 Scopus citations

Dynamic Behavior of RNA Nanoparticles Analyzed by AFM on a Mica/Air Interface

Sajja, S., Chandler, M., Fedorov, D., Kasprzak, W. K., Lushnikov, A., Viard, M., Shah, A., Dang, D., Dahl, J., Worku, B., Dobrovolskaia, M. A., Krasnoslobodtsev, A., Shapiro, B. A. & Afonin, K. A., Dec 11 2018, In : Langmuir. 34, 49, p. 15099-15108 10 p.

Research output: Contribution to journalArticle

10 Scopus citations

Establishment of a Human iPSC- and Nanofiber-Based Microphysiological Blood-Brain Barrier System

Qi, D., Wu, S., Lin, H., Kuss, M. A., Lei, Y., Krasnoslobodtsev, A., Ahmed, S., Zhang, C., Kim, H. J., Jiang, P. & Duan, B., Jul 5 2018, In : ACS Applied Materials and Interfaces. 10, 26, p. 21825-21835 11 p.

Research output: Contribution to journalArticle

10 Scopus citations

Movements and dive patterns of pygmy killer whales (Feresa attenuata) released in the Gulf of Mexico following rehabilitation

Pulis, E. E., Wells, R. S., Schorr, G. S., Douglas, D. C., Samuelson, M. M. & Solangi, M., 2018, In : Aquatic Mammals. 44, 5, p. 555-567 13 p.

Research output: Contribution to journalArticle

Nanoscopic imaging of oxidized graphene monolayer using tip-enhanced Raman scattering

Smolsky, J. M. & Krasnoslobodtsev, A. V., Dec 1 2018, In : Nano Research. 11, 12, p. 6346-6359 14 p.

Research output: Contribution to journalArticle

2 Scopus citations

Pneumatic microfluidic cell compression device for high-throughput study of chondrocyte mechanobiology

Lee, D., Erickson, A., You, T., Dudley, A. T. & Ryu, S., Jul 21 2018, In : Lab on a Chip. 18, 14, p. 2077-2086 10 p.

Research output: Contribution to journalArticle

5 Scopus citations
2017

Does size really matter? Investigating cognitive differences in spatial memory ability based on size in domestic dogs

Broadway, M. S., Samuelson, M. M., Christopher, J. L., Jett, S. E. & Lyn, H., May 1 2017, In : Behavioural Processes. 138, p. 7-14 8 p.

Research output: Contribution to journalArticle

Effects of the synthetic corticosteroid dexamethasone on bovine herpesvirus 1 productive infection

Zhu, L., Thompson, J., Ma, F., Eudy, J. & Jones, C., May 1 2017, In : Virology. 505, p. 71-79 9 p.

Research output: Contribution to journalArticle

9 Scopus citations

Evaluation of a developing ecotourism industry: Whale-watching in the Gulf of Tribugá, Colombia

Zapetis, M. E., Samuelson, M. M., Botero Acosta, N. & Kuczaj, S. A., 2017, In : International Journal of Comparative Psychology. 30

Research output: Contribution to journalArticle

Olfactory Enrichment in California Sea Lions (Zalophus californianus): An Effective Tool for Captive Welfare?

Samuelson, M. M., Lauderdale, L. K., Pulis, K., Solangi, M., Hoffland, T. & Lyn, H., Jan 2 2017, In : Journal of Applied Animal Welfare Science. 20, 1, p. 75-85 11 p.

Research output: Contribution to journalArticle

Oriented clonal cell dynamics enables accurate growth and shaping of vertebrate cartilage

Kaucka, M., Zikmund, T., Tesarova, M., Gyllborg, D., Hellander, A., Jaros, J., Kaiser, J., Petersen, J., Szarowska, B., Newton, P. T., Dyachuk, V., Li, L., Qian, H., Johansson, A. S., Mishina, Y., Currie, J. D., Tanaka, E. M., Erickson, A., Dudley, A., Brismar, H. & 9 others, Southam, P., Coen, E., Chen, M., Weinstein, L. S., Hampl, A., Arenas, E., Chagin, A. S., Fried, K. & Adameyko, I., Apr 17 2017, In : eLife. 6, e25902.

Research output: Contribution to journalArticle

13 Scopus citations
2016

Effect of acidic pH on the stability of α-synuclein dimers

Lv, Z., Krasnoslobodtsev, A. V., Zhang, Y., Ysselstein, D., Rochet, J. C., Blanchard, S. C. & Lyubchenko, Y. L., Oct 1 2016, In : Biopolymers. p. 715-724 10 p.

Research output: Contribution to journalArticle

11 Scopus citations

Polymorphism of amyloid fibrils formed by a peptide from the yeast prion protein Sup35: AFM and Tip-Enhanced Raman Scattering studies

Krasnoslobodtsev, A. V., Deckert-Gaudig, T., Zhang, Y., Deckert, V. & Lyubchenko, Y. L., Jun 1 2016, In : Ultramicroscopy. 165, p. 26-33 8 p.

Research output: Contribution to journalArticle

15 Scopus citations

Proline-rich antimicrobial peptides optimized for binding to Escherichia coli chaperone DnaK

Knappe, D., Goldbach, T., Hatfield, M. P. D., Palermo, N. Y., Weinert, S., Strater, N., Hoffmann, R. & Lovas, S., Dec 1 2016, In : Protein and Peptide Letters. 23, 12, p. 1061-1071 11 p.

Research output: Contribution to journalArticle

9 Scopus citations

Targeted myocardial gene expression in failing hearts by RNA sequencing

Dhar, K., Moulton, A. M., Rome, E., Qiu, F., Kittrell, J., Raichlin, E., Zolty, R., Um, J. Y., Moulton, M. J., Basma, H., Anderson, D. R., Eudy, J. D. & Lowes, B. D., Nov 25 2016, In : Journal of Translational Medicine. 14, 1, 327.

Research output: Contribution to journalArticle

6 Scopus citations
2015

A flexible nanoarray approach for the assembly and probing of molecular complexes

Krasnoslobodtsev, A. V., Zhang, Y., Viazovkina, E., Gall, A., Bertagni, C. & Lyubchenko, Y. L., May 5 2015, In : Biophysical journal. 108, 9, p. 2333-2339 7 p.

Research output: Contribution to journalArticle

11 Scopus citations

Direct detection of α-synuclein dimerization dynamics: Single-molecule fluorescence analysis

Lv, Z., Krasnoslobodtsev, A. V., Zhang, Y., Ysselstein, D., Rochet, J. C., Blanchard, S. C. & Lyubchenko, Y. L., Apr 21 2015, In : Biophysical journal. 108, 8, p. 2038-2047 10 p.

Research output: Contribution to journalArticle

24 Scopus citations

Genome-wide gene expression in relation to age in large laboratory cohorts of drosophila melanogaster

Carlson, K. A., Gardner, K., Pashaj, A., Carlson, D. J., Yu, F., Eudy, J. D., Zhang, C. & Harshman, L. G., 2015, In : Genetics Research International. 2015, 835624.

Research output: Contribution to journalArticle

14 Scopus citations

Nano-immunoassay with improved performance for detection of cancer biomarkers

Krasnoslobodtsev, A. V., Torres, M. P., Kaur, S., Vlassiouk, I. V., Lipert, R. J., Jain, M., Batra, S. K. & Lyubchenko, Y. L., Jan 1 2015, In : Nanomedicine: Nanotechnology, Biology, and Medicine. 11, 1, p. 167-173 7 p.

Research output: Contribution to journalArticle

21 Scopus citations
2014

A dynamic cell adhesion surface regulates tissue architecture in growth plate cartilage

Romereim, S. M., Conoan, N. H., Chen, B. & Dudley, A. T., 2014, In : Development (Cambridge). 141, 10, p. 2085-2095 11 p.

Research output: Contribution to journalArticle

31 Scopus citations
2013

Attachment-regulated signaling networks in the fibroblast-populated 3D collagen matrix

Carlson, M. A., Smith, L. M., Cordes, C. M., Chao, J. & Eudy, J. D., 2013, In : Scientific reports. 3, 1880.

Research output: Contribution to journalArticle

8 Scopus citations

Genome-Wide Mutation Avalanches Induced in Diploid Yeast Cells by a Base Analog or an APOBEC Deaminase

Lada, A. G., Stepchenkova, E. I., Waisertreiger, I. S. R., Noskov, V. N., Dhar, A., Eudy, J. D., Boissy, R. J., Hirano, M., Rogozin, I. B. & Pavlov, Y. I., Sep 2013, In : PLoS genetics. 9, 9, e1003736.

Research output: Contribution to journalArticle

39 Scopus citations

Impact of anaesthetics and analgesics on fetal growth in the mouse

Thaete, L. G., Levin, S. I. & Dudley, A. T., 2013, In : Laboratory Animals. 47, 3, p. 175-183 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Novel polymer linkers for single molecule AFM force spectroscopy

Tong, Z., Mikheikin, A., Krasnoslobodtsev, A., Lv, Z. & Lyubchenko, Y. L., Apr 1 2013, In : Methods. 60, 2, p. 161-168 8 p.

Research output: Contribution to journalArticle

23 Scopus citations

α-Synuclein misfolding assessed with single molecule AFM force spectroscopy: Effect of pathogenic mutations

Krasnoslobodtsev, A. V., Volkov, I. L., Asiago, J. M., Hindupur, J., Rochet, J. C. & Lyubchenko, Y. L., 2013, In : Biochemistry. 52, 42, p. 7377-7386 10 p.

Research output: Contribution to journalArticle

27 Scopus citations
2012

Cellular transcription factors induced in trigeminal ganglia during dexamethasone-induced reactivation from latency stimulate bovine herpesvirus 1 productive infection and certain viral promoters

Workman, A., Eudy, J., Smith, L., da Silva, L. F., Sinani, D., Bricker, H., Cook, E., Doster, A. & Jones, C., Mar 2012, In : Journal of virology. 86, 5, p. 2459-2473 15 p.

Research output: Contribution to journalArticle

28 Scopus citations

Effect of electrostatics on aggregation of prion protein Sup35 peptide

Portillo, A. M., Krasnoslobodtsev, A. V. & Lyubchenko, Y. L., Apr 25 2012, In : Journal of Physics Condensed Matter. 24, 16, 164205.

Research output: Contribution to journalArticle

23 Scopus citations

Effect of spermidine on misfolding and interactions of Alpha-synuclein

Krasnoslobodtsev, A. V., Peng, J., Asiago, J. M., Hindupur, J., Rochet, J. C. & Lyubchenko, Y. L., May 25 2012, In : PloS one. 7, 5, e38099.

Research output: Contribution to journalArticle

35 Scopus citations

Fibrillogenesis of huntingtin and other glutamine containing proteins

Lyubchenko, Y. L., Krasnoslobodtsev, A. V. & Luca, S., 2012, In : Sub-cellular biochemistry. 65, p. 225-251 27 p.

Research output: Contribution to journalArticle

9 Scopus citations

Hexapeptide fragment of carcinoembryonic antigen which acts as an agonist of heterogeneous ribonucleoprotein M

Palermo, N. Y., Thomas, P., Murphy, R. F. & Lovas, S., Apr 2012, In : Journal of Peptide Science. 18, 4, p. 252-260 9 p.

Research output: Contribution to journalArticle

7 Scopus citations
2011

A re-evaluation of two key reagents for in vivo studies of Wnt signaling

Ahrens, M. J., Romereim, S. & Dudley, A. T., Sep 2011, In : Developmental Dynamics. 240, 9, p. 2060-2068 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

Calcium/calmodulin-dependent protein kinase II activity regulates the proliferative potential of growth plate chondrocytes

Li, Y., Ahrens, M. J., Wu, A., Liu, J. & Dudley, A. T., Jan 15 2011, In : Development. 138, 2, p. 359-370 12 p.

Research output: Contribution to journalArticle

27 Scopus citations

Chemical pretreatment of growth plate cartilage increases immunofluorescence sensitivity

Ahrens, M. J. & Dudley, A. T., 2011, In : Journal of Histochemistry and Cytochemistry. 59, 4, p. 408-418 11 p.

Research output: Contribution to journalArticle

7 Scopus citations

IRF4 is a suppressor of C-Myc induced B cell leukemia

Pathak, S., Ma, S., Trinh, L., Eudy, J., Wagner, K. U., Joshi, S. S. & Lu, R., 2011, In : PloS one. 6, 7, e22628.

Research output: Contribution to journalArticle

27 Scopus citations

miR-27b*, an oxidative stress-responsive microRNA modulates nuclear factor-kB pathway in RAW 264.7 cells

Thulasingam, S., Massilamany, C., Gangaplara, A., Dai, H., Yarbaeva, S., Subramaniam, S., Riethoven, J. J., Eudy, J., Lou, M. & Reddy, J., Jun 2011, In : Molecular and cellular biochemistry. 352, 1-2, p. 181-188 8 p.

Research output: Contribution to journalArticle

74 Scopus citations
2010

Induced pluripotent stem cells generate both retinal ganglion cells and photoreceptors: Therapeutic implications in degenerative changes in glaucoma and age-related macular degeneration

Parameswaran, S., Balasubramanian, S., Babai, N., Qiu, F., Eudy, J. D., Thoreson, W. B. & Ahmad, I., Apr 2010, In : STEM CELLS. 28, 4, p. 695-703 9 p.

Research output: Contribution to journalArticle

92 Scopus citations

Microarray analysis of Paramecium bursaria chlorella virus 1 transcription

Yanai-Balser, G. M., Duncan, G. A., Eudy, J. D., Wang, D., Li, X., Agarkova, I. V., Dunigan, D. D. & Van Etten, J. L., Jan 2010, In : Journal of virology. 84, 1, p. 532-542 11 p.

Research output: Contribution to journalArticle

32 Scopus citations

Telomerase-immortalized human mammary stem/progenitor cells with ability to self-renew and differentiate

Zhao, X., Malhotra, G. K., Lele, S. M., Lele, M. S., West, W. W., Eudy, J. D., Band, H. & Band, V., Aug 10 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 32, p. 14146-14151 6 p.

Research output: Contribution to journalArticle

41 Scopus citations
2009

CD38 regulation in activated astrocytes: Implications for neuroinflammation and HIV-1 brain infection

Kou, W., Banerjee, S., Eudy, J., Smith, L. M., Persidsky, R., Borgmann, K., Wu, L., Sakhuja, N., Deshpande, M. S., Walseth, T. F. & Ghorpade, A., Aug 1 2009, In : Journal of Neuroscience Research. 87, 10, p. 2326-2339 14 p.

Research output: Contribution to journalArticle

29 Scopus citations

Convergent extension movements in growth plate chondrocytes require gpi-anchored cell surface proteins

Ahrens, M. J., Li, Y., Jiang, H. & Dudley, A. T., Oct 15 2009, In : Development. 136, 20, p. 3463-3474 12 p.

Research output: Contribution to journalArticle

32 Scopus citations

Noncanonical frizzled signaling regulates cell polarity of growth plate chondrocytes

Li, Y. & Dudley, A. T., Apr 1 2009, In : Development. 136, 7, p. 1083-1092 10 p.

Research output: Contribution to journalArticle

77 Scopus citations