Eppley Institute for Cancer Research

Research Output

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2020

Clinical evaluation

Armitage, J. O. & Friedberg, J. W., 2020, Hematologic Malignancies. Springer, p. 99-111 13 p. (Hematologic Malignancies).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neutrophils in the Tumor Microenvironment

Wu, L., Saxena, S. & Singh, R. K., 2020, Advances in Experimental Medicine and Biology. Springer, p. 1-20 20 p. (Advances in Experimental Medicine and Biology; vol. 1224).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Pancreatic Stellate Cells: The Key Orchestrator of The Pancreatic Tumor Microenvironment

Thomas, D. & Radhakrishnan, P., 2020, Advances in Experimental Medicine and Biology. Springer, p. 57-70 14 p. (Advances in Experimental Medicine and Biology; vol. 1234).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Protecting groups in peptide synthesis

Conda-Sheridan, M. & Krishnaiah, M., 2020, Methods in Molecular Biology. Humana Press Inc., p. 111-128 18 p. (Methods in Molecular Biology; vol. 2103).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Animal models of cancer-associated cachexia

Shukla, S. K. & Singh, P. K., Apr 17 2019, Animal Models in Cancer Drug Discovery. Elsevier, p. 59-74 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Evaluating the metabolic alterations in pancreatic cancer

Dasgupta, A., Shukla, S. K., Gunda, V., King, R. J. & Singh, P. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 221-228 8 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene therapy

Wu, H., Chaudhary, A. K. & Mahato, R. I., Apr 13 2019, Pharmaceutical Biotechnology: Fundamentals and Applications. Springer International Publishing, p. 323-355 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular and physiological evaluation of pancreatic cancer-induced cachexia

Shukla, S. K., Dasgupta, A., Mulder, S. E. & Singh, P. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 321-333 13 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Mouse models of pancreatic cancer: An ever-emerging arm of cancer drug discovery

Ganguly, K., Batra, S. K. & Kaur, S., Apr 17 2019, Animal Models in Cancer Drug Discovery. Elsevier, p. 249-266 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Thermodynamic contributions for the inclusion of bulges and mismatches in dna hairpin loops

Shikiya, R. & Marky, L. A., Jun 5 2019, A Closer Look at Calorimetry. Nova Science Publishers, Inc., p. 31-60 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Assembly of centromere chromatin for characterization by high-speed time-lapse atomic force microscopy

Stumme-Diers, M. P., Banerjee, S., Sun, Z. & Lyubchenko, Y. L., 2018, Methods in Molecular Biology. Humana Press Inc., p. 225-242 18 p. (Methods in Molecular Biology; vol. 1814).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Cardiac toxicity

Yahalom, J. & Lunning, M. A., Nov 16 2018, DeVita, Hellman, and Rosenberg's Cancer: Principles & Practice of Oncology. Wolters Kluwer Health Pharma Solutions (Europe) Ltd, p. 2120-2128 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Diagnosis and treatment of non-hodgkin’s lymphoma of adults

Crockett, D. G., Armitage, J. O. & Vose, J. M., Jan 1 2018, Neoplastic Diseases of the Blood. Springer International Publishing, p. 951-973 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Esterases

Lockridge, O., Quinn, D. M. & Radić, Z., 2018, Biotransformation. Elsevier Inc., Vol. 10-15. p. 277-307 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Evaluating the metabolic impact of hypoxia on pancreatic cancer cells

Murthy, D., Vernucci, E., Goode, G., Abrego, J. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 81-93 13 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Evaluation of macrophage polarization in pancreatic cancer microenvironment under hypoxia

Attri, K. S., Mehla, K. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 265-276 12 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Hypoxia-induced metabolomic alterations in pancreatic cancer cells

Gunda, V., Kumar, S., Dasgupta, A. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 95-105 11 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

Hypoxia-mediated in vivo tumor glucose uptake measurement and analysis

Shukla, S. K., Mulder, S. E. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-113 7 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Polymer nanoarray approach for the characterization of biomolecular interactions

Maity, S., Viazovkina, E., Gall, A. & Lyubchenko, Y. L., 2018, Methods in Molecular Biology. Humana Press Inc., p. 63-74 12 p. (Methods in Molecular Biology; vol. 1814).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Supported lipid bilayers for atomic force microscopy studies

Lv, Z., Banerjee, S., Zagorski, K. & Lyubchenko, Y. L., 2018, Methods in Molecular Biology. Humana Press Inc., p. 129-143 15 p. (Methods in Molecular Biology; vol. 1814).

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Scopus citations

Transcriptional profiling using RNA-seq to study hypoxia-mediated gene regulation

Shukla, S. K., King, R. J. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 55-66 12 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Unfolding thermodynamics of nucleic acids: Determining heat capacity effects using differential scanning calorimetry (DSC)

Carr, C. E., Reiling-Steffensmeier, C., Khutsishvili, I. & Marky, L. A., Jan 1 2018, Differential Scanning Calorimetry: Basics and Applications. Nova Science Publishers, Inc., p. 1-41 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2017

Atomic force microscope for topographic studies

Lyubchenko, Y. L., Jan 1 2017, An Introduction to Single Molecule Biophysics. CRC Press, p. 21-78 58 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Magnetic tweezers

Bianco, P. R., Lyubchenko, Y. L. & Sun, Z., Jan 1 2017, An Introduction to Single Molecule Biophysics. CRC Press, p. 115-139 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanisms of global and region-specific control of mutagenesis

Pavlov, Y. I., Lada, A. G., Grabow, C. & Stepchenkova, E. I., Jan 1 2017, Genetics, Evolution and Radiation: Crossing Borders, The Interdisciplinary Legacy of Nikolay W. Timofeeff-Ressovsky. Springer International Publishing, p. 55-76 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Non-viral delivery of nucleic acid complexes

Kumar, V., Wen, D. & Mahato, R. I., Jan 1 2017, Comprehensive Biomaterials II. Elsevier, p. 506-526 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Structure and biophysics of CBFβ/ RUNX and its translocation products

Tahirov, T. H. & Bushweller, J., 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 21-31 11 p. (Advances in Experimental Medicine and Biology; vol. 962).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2016

Ancillary diagnostic opportunities: Harnessing circulating tumor cells, tumor educated platelets, and extracellular vesicles for the early detection of pancreatic cancer

Cruz, E. & Batra, S. K., Jan 1 2016, Gastrointestinal Cancers: Prevention, Detection and Treatment. Nova Science Publishers, Inc., Vol. 2. p. 81-92 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Atomic force microscopy imaging and probing of amyloid nanoaggregates

Lyubchenko, Y. L. & Shlyakhtenko, L. S., Feb 24 2016, Handbook of Clinical Nanomedicine: Nanoparticles, Imaging, Therapy and Clinical Applications. Pan Stanford Publishing Pte. Ltd., Vol. 1. p. 589-616 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

BAR Domains and BAR Domain Superfamily Proteins

Sharma, M. & Caplan, S., 2016, Organizational Cell Biology. Elsevier Inc., Vol. 2. p. 491-502 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bioinformatics analysis to identify cell adhesion molecules in cancer

Sadanandam, A., Gibb, W. J. & Singh, R. K., Apr 19 2016, Adhesion Molecules. CRC Press, p. 309-325 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Inhibition of depurinating estrogen-DNA adduct formation in the prevention of breast and other cancers

Cavalieri, E. L. & Rogan, E. G., Jan 1 2016, Trends in Breast Cancer Prevention. Springer International Publishing, p. 113-145 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Nanoimaging for nanomedicine

Lyubchenko, Y. L., Zhang, Y., Krasnoslobodtsev, A. V. & Rochet, J. C., Feb 24 2016, Handbook of Clinical Nanomedicine: Nanoparticles, Imaging, Therapy and Clinical Applications. Pan Stanford Publishing Pte. Ltd., Vol. 1. p. 465-492 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Novel cancer therapies by molecular targeting distinct growth factor pathways and drug resistance-associated molecules in cancer-and metastasis-initiating cells

Mimeault, M. & Batra, S. K., Apr 19 2016, Role of Cancer Stem Cells in Cancer Biology and Therapy. CRC Press, p. 199-226 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pharmacogenomics of neurodegenerative diseases: Roles in personalized medicines

Evande, R. E., Dutta, R., Tan, C., Grem, J. L. & Mahato, R. I., Jan 1 2016, Neuroimmune Pharmacology. Springer International Publishing, p. 959-970 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Production of Recombinant Chemokines and Validation of Refolding

Veldkamp, C. T., Koplinski, C. A., Jensen, D. R., Peterson, F. C., Smits, K. M., Smith, B. L., Johnson, S. K., Lettieri, C., Buchholz, W. G., Solheim, J. C. & Volkman, B. F., 2016, Methods in Enzymology. Academic Press Inc., p. 539-565 27 p. (Methods in Enzymology; vol. 570).

Research output: Chapter in Book/Report/Conference proceedingChapter

13 Scopus citations

The Hematopoietic Stem and Progenitor Cell Cistrome: GATA Factor-Dependent cis-Regulatory Mechanisms

Hewitt, K. J., Johnson, K. D., Gao, X., Keles, S. & Bresnick, E. H., 2016, Hematopoiesis, 2016. Bresnick, E. H. (ed.). Academic Press Inc., p. 45-76 32 p. (Current Topics in Developmental Biology; vol. 118).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations
2015

Biomarkers of Exposure to Organophosphorus Poisons: A New Motif for Covalent Binding to Tyrosine in Proteins That Have No Active Site Serine. A New Motif for Covalent Binding to Tyrosine in Proteins That Have No Active Site Serine

Lockridge, O., Schopfer, L. M. & Masson, P., Jan 21 2015, Handbook of Toxicology of Chemical Warfare Agents: Second Edition. Elsevier Inc., p. 953-965 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cardiac toxicity

Yahalom, J. & Lunning, M. A., Jan 7 2015, DeVita, Hellman, and Rosenberg's Cancer: Principles & Practice of Oncology: Tenth Edition. Wolters Kluwer Health Adis (ESP)

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Chromatin imaging with time-lapse atomic force microscopy

Lyubchenko, Y. L. & Shlyakhtenko, L. S., Mar 31 2015, Chromatin Protocols: Third Edition. Springer New York, p. 27-42 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Clinical evaluation

Armitage, J. & Gisselbrecht, C., Jan 1 2015, Hodgkin Lymphoma: A Comprehensive Overview, Second Edition. Springer International Publishing, p. 95-106 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mouse models of breast cancer

Sakamoto, K., Schmidt, J. W. & Wagner, K. U., Jan 30 2015, Mouse Models of Cancer: Methods and Protocols. Springer New York, p. 47-71 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mouse models of breast cancer

Sakamoto, K., Schmidt, J. W. & Wagner, K. U., Jan 30 2015, Mouse Models of Cancer: Methods and Protocols. Springer New York, p. 47-71 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Oxidative metabolism of estrogens in cancer initiation and prevention

Rogan, E. G. & Cavalieri, E. L., 2015, Oxidative Stress: Diagnostics, Prevention, and Therapy Volume 2. Andreescu, S. & Hepel, M. (eds.). American Chemical Society, p. 35-51 17 p. (ACS Symposium Series; vol. 1200).

Research output: Chapter in Book/Report/Conference proceedingChapter

Prostate cancer

Datta, K. & Tindall, D. J., Jan 1 2015, Molecular Oncology: Causes of Cancer and Targets for Treatment. Cambridge University Press, p. 591-597 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tumor microenvironment: Blood vascular system in cancer metastasis

Senapati, S., Singh, R. K. & Batra, S. K., Jan 1 2015, Systems Biology of Cancer. Cambridge University Press, p. 309-322 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Antibody labeling with radioiodine and radiometals

Gupta, S., Batra, S. K. & Jain, M., 2014, Methods in Molecular Biology. Humana Press Inc., Vol. 1141. p. 147-157 11 p. (Methods in Molecular Biology; vol. 1141).

Research output: Chapter in Book/Report/Conference proceedingChapter

Antibody labeling with radioiodine and radiometals

Gupta, S., Batra, S. & Jain, M., 2014, Drug Delivery System. Humana Press Inc., p. 147-157 11 p. (Methods in Molecular Biology; vol. 1141).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Generation of Conditional Knockout Mice

Sakamoto, K., Gurumurthy, C. B. & Wagner, K. U., 2014, Methods in Molecular Biology. Humana Press Inc., Vol. 1194. p. 21-35 15 p. (Methods in Molecular Biology; vol. 1194).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Therapy in Oncology

Talmadge, J. E. & Cowan, K. H., 2014, Abeloff's Clinical Oncology: Fifth Edition. Elsevier Inc., p. 493-507.e4

Research output: Chapter in Book/Report/Conference proceedingChapter