Eppley Institute for Cancer Research

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Conference contribution

A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3

Ohno, Y., Nishibori, E., Narumi, T., Koishi, T., Tahirov, T. H., Ago, H., Miyano, M., Himeno, R., Ebisuzaki, T., Sakata, M. & Taiji, M., 2007, Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, SC'07. 56. (Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, SC'07).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

A comparison of statistical approaches for genetic anticipation with application to pancreatic cancer

Havnatzki, G. R., Brand, R. E., Haynatzka, V. R., Lynch, H. T. & Sherman, S. A., 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. 4076630. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Activation of immune cells by polyanhydride adjuvants: Potential for novel cancer vaccines

Torres, M. P., Mallapragada, S. K., Jain, M., Batra, S. K. & Narasimhan, B., 2008, 8th World Biomaterials Congress 2008. p. 442 1 p. (8th World Biomaterials Congress 2008; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Breast cancer subtypes: Two decades of journey from cell culture to patients

Zhao, X., Gurumurthy, C. B., Malhotra, G., Mirza, S., Mohibi, S., Bele, A., Quinn, M. G., Band, H. & Band, V., 2011, Human Cell Transformation: Role of Stem Cells and the Microenvironment. Rhim, J. & Kremer, R. (eds.). p. 135-144 10 p. (Advances in Experimental Medicine and Biology; vol. 720).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Catechol quinones of estrogens in the initiation of breast, prostate, and other human cancers: Keynote lecture

Cavalieri, E. & Rogan, E., Nov 2006, Estrogens and Human Diseases. Blackwell Publishing Inc., p. 286-301 16 p. (Annals of the New York Academy of Sciences; vol. 1089).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

82 Scopus citations

Drug resistance and cancer

Morrow, C. S. & Cowan, K., 1993, Advances in Experimental Medicine and Biology. p. 287-305 19 p. (Advances in Experimental Medicine and Biology; vol. 330).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

15 Scopus citations

Efficacy of indocyanine green-loaded hyaluronic acid nanoparticles for the surgical resection of orthotopic breast tumors

Wojtynek, N. E., Holmes, M. B., Olson, M. T., Baher, F., Silva, E. & Mohs, A. M., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108621G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Engineering hydrogel based cancer microenvironments for in vitro breast cancer cell culture and therapeutics screening

Shi, W., Kuss, M. A., Mohapatra, B., Mirza, S., Band, H., Band, V. & Duan, B., 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, p. 642 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Estrogen mediation of breast tumor formation involves estrogen receptor-dependent, as well as independent, genotoxic effects

Santen, R., Cavalieri, E., Rogan, E., Russo, J., Guttenplan, J., Ingle, J. & Yue, W., Feb 2009, Steroid Enzymes and Cancer. Blackwell Publishing Inc., p. 132-140 9 p. (Annals of the New York Academy of Sciences; vol. 1155).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

61 Scopus citations

From context-dependence of mutations to molecular mechanisms of mutagenesis

Rogozin, I. B., Malyarchuk, B. A., Pavlov, Y. & Milanesi, L., 2005, Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005. p. 409-420 12 p. (Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Scopus citations

Grid-layout visualization method in the microarray data analysis interactive graphics toolkit

Xiao, L., Shats, O. & Sherman, S., 2003, Proceedings of the 36th Annual Hawaii International Conference on System Sciences, HICSS 2003. Sprague, R. H. (ed.). Institute of Electrical and Electronics Engineers Inc., 1174805. (Proceedings of the 36th Annual Hawaii International Conference on System Sciences, HICSS 2003).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

High-throughput computational and experimental biology strategy in identifying tumor expressing CAMs

Sadanandam, A., Varney, M. L. & Singh, R. K., 2004, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. p. 450-451 2 p. (Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Identification of genes important in predicting the overall survival in patients with follicular lymphoma

Xiao, L., Fu, K., Iqbal, J., Chan, W. C. & Sherman, S., 2005, Proceedings of the 2005 International Conference on Data Mining, DMIN'05. p. 181-186 6 p. (Proceedings of the 2005 International Conference on Data Mining, DMIN'05).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Imaging DNA molecules chemically bound to a mica surface (Invited Paper)

Lindsay, S. M., Lyubchenko, Y. L., Gall, A. A., Shlyakhtenko, L. S. & Harrington, R. E., 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 84-90 7 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1639).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations

Influence of time period and birth cohort effects on age-specific incidence rates of pancreatic and kidney cancer

Mdzinarishvili, T., Gleason, M. X. & Sherman, S., 2010, Proceedings of the 43rd Annual Hawaii International Conference on System Sciences, HICSS-43. 5428372. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Introduction to advanced bioinformatics tools for translational research minitrack

Ali, H. H. & Sherman, S., 2008, Proceedings of the 41st Annual Hawaii International Conference on System Sciences 2008, HICSS. 4438931. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Introduction to Mini-track: Advanced data management tools for biomedical informatics

Ali, H. H. & Sherman, S., 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. IEEE Computer Society, p. 127 1 p. 4076626. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

MUC16 as a potential target for the surgical detection of pancreatic cancer

Olson, M. T., Wojtynek, N. E., Caffrey, T. C., Radhakrishnan, P., Ly, Q. P., Talmon, G. A., Hollingsworth, M. A. & Mohs, A. M., 2020, Molecular-Guided Surgery: Molecules, Devices, and Applications VI. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 112220M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11222).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mucin O-glycan branching enzymes: Structure, function, and gene regulation

Cheng, P-W. & Radhakrishnan, P., 2011, The Molecular Immunology of Complex Carbohydrates-3. Wu, A. (ed.). p. 465-492 28 p. (Advances in Experimental Medicine and Biology; vol. 705).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

16 Scopus citations

New computational models for electrostatics of macromolecules in solvents

Dai, J., Tsukerman, I., Rubinstein, A. & Sherman, S., 2006, 12th Biennial IEEE Conference on Electromagnetic Field Computation, CEFC 2006. IEEE Computer Society, p. 362 1 p. 1633152. (12th Biennial IEEE Conference on Electromagnetic Field Computation, CEFC 2006).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Novel intra-operative peripheral nerve agent for fluorescence guided imaging

Liu, X., Lovell, P., Cruz, D. R., Houser, L., Lagrange, C. A. & Mohs, A. M., 2019, Clinical and Translational Neurophotonics 2020. Madsen, S. J., Yang, V. X. D. & Thakor, N. V. (eds.). SPIE, 112250J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11225).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

ONE-ELECTRON OXIDATION IN AROMATIC HYDROCARBON CARCINOGENESIS.

Cavalieri, E. L. & Rogan, E. G., 1985, ACS Symposium Series. Harvey, R. G. (ed.). ACS, p. 289-305 17 p. (ACS Symposium Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

35 Scopus citations

ONE-ELECTRON OXIDATION OF AROMATIC HYDROCARBONS IN CHEMICAL AND BIOLOGICAL SYSTEMS.

Cavalieri, E. & Rogan, E., 1983, Polynuclear Aromatic Hydrocarbons, International Symposium. Battelle Press, p. 1-26 26 p. (Polynuclear Aromatic Hydrocarbons, International Symposium).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

PCCR study for Italy: Meat consumption, preparation, and meat-derived carcinogens on the risk of sporadic pancreatic cancer

Haynatzki, G., Haynatzka, V., Ghiorzo, P. & Sherman, S., 2009, Proceedings of the 42nd Annual Hawaii International Conference on System Sciences, HICSS. 4755577. (Proceedings of the 42nd Annual Hawaii International Conference on System Sciences, HICSS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Protein motif searching through similar enriched parikh vector identification

Huang, X., Ali, H., Sadanandam, A. & Singh, R., 2005, Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering. p. 285-289 5 p. 1544482. (Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Qualitative and quantitative analysis of endocytic recycling

Reineke, J. B., Xie, S., Naslavsky, N. & Caplan, S., 2015, Methods in Cell Biology: Sorting and Recycling Endosomes, 2015. Guo, W. (ed.). Academic Press Inc., p. 139-155 17 p. (Methods in Cell Biology; vol. 130).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

SRPVS: A new motif searching algorithm for protein analysis

Huang, X., Ali, H., Sadanandam, A. & Singh, R., 2004, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. p. 674-675 2 p. (Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Surgical imaging of pancreatic cancer using polysaccharide-delivered near infrared fluorophores

Qi, B., Crawford, A. J., Wojtynek, N. E., Hollingsworth, M. A., Ly, Q. P. & Mohs, A. M., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

SYNERGISTIC EFFECT OF THE ENVIRONMENTAL CONTAMINANTS CYCLOPENTA(cd)PYRENE AND BENZO(a)PYRENE IN MOUSE SKIN CARCINOGENICITY.

Rogan, E., Cavalieri, E., Munhall, A. & Salmasi, S., 1983, Polynuclear Aromatic Hydrocarbons, International Symposium. Battelle Press, p. 1035-1046 12 p. (Polynuclear Aromatic Hydrocarbons, International Symposium).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Targeting fatty acid synthase to inhibit tumor growth and overcome taxane resistance

Souchek, J. J., Muraskin, L., Houser, L., Vu, Q. & Mohs, A. M., 2019, Visualizing and Quantifying Drug Distribution in Tissue III. Chan, K. F. & Evans, C. L. (eds.). SPIE, 1085909. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10859).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using a level set to model multiple myeloma induced bone loss

Ayati, B. P., Graham, J. M. & Holstein, S. A., 2012, ECCOMAS 2012 - European Congress on Computational Methods in Applied Sciences and Engineering, e-Book Full Papers. p. 3236-3248 13 p. (ECCOMAS 2012 - European Congress on Computational Methods in Applied Sciences and Engineering, e-Book Full Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations