Research Output

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2020

Clinical evaluation

Armitage, J. O. & Friedberg, J. W., 2020, Hematologic Malignancies. Springer, p. 99-111 13 p. (Hematologic Malignancies).

Research output: Chapter in Book/Report/Conference proceedingChapter

Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope

Vellichirammal, N. N., Albahrani, A., Li, Y. & Guda, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 13-25 13 p. (Methods in Molecular Biology; vol. 2079).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neutrophils in the Tumor Microenvironment

Wu, L., Saxena, S. & Singh, R. K., 2020, Advances in Experimental Medicine and Biology. Springer, p. 1-20 20 p. (Advances in Experimental Medicine and Biology; vol. 1224).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Pancreatic Stellate Cells: The Key Orchestrator of The Pancreatic Tumor Microenvironment

Thomas, D. & Radhakrishnan, P., 2020, Advances in Experimental Medicine and Biology. Springer, p. 57-70 14 p. (Advances in Experimental Medicine and Biology; vol. 1234).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Synthesis and application of a ratiometric probe for hydrogen peroxide

Yin, R., Fang, Y., Zhou, X. & Stains, C. I., 2020, Methods in Enzymology. Academic Press Inc., p. 23-36 14 p. (Methods in Enzymology; vol. 639).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Animal models of cancer-associated cachexia

Shukla, S. K. & Singh, P. K., Apr 17 2019, Animal Models in Cancer Drug Discovery. Elsevier, p. 59-74 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemical and cellular assays to assess the effects of acetylation on base excision repair enzymes

Roychoudhury, S., Pramanik, S., Harris, H. L. & Bhakat, K. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 191-206 16 p. (Methods in Molecular Biology; vol. 1983).

Research output: Chapter in Book/Report/Conference proceedingChapter

Design and synthesis of fluorescent activity probes for protein phosphatases

Casey, G. R., Beck, J. R. & Stains, C. I., 2019, Methods in Enzymology. Shukla, A. K. (ed.). Academic Press Inc., p. 29-53 25 p. (Methods in Enzymology; vol. 622).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Design of antimicrobial peptides: Progress made with human cathelicidin LL-37

Wang, G., Narayana, J. L., Mishra, B., Zhang, Y., Wang, F., Wang, C., Zarena, D., Lushnikova, T. & Wang, X., 2019, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 215-240 26 p. (Advances in Experimental Medicine and Biology; vol. 1117).

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Scopus citations

Evaluating the metabolic alterations in pancreatic cancer

Dasgupta, A., Shukla, S. K., Gunda, V., King, R. J. & Singh, P. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 221-228 8 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene therapy

Wu, H., Chaudhary, A. K. & Mahato, R. I., Apr 13 2019, Pharmaceutical Biotechnology: Fundamentals and Applications. Springer International Publishing, p. 323-355 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

In situ AFM analysis investigating disassembly of DNA nanoparticles and nanofilms

Zou, Y., Wan, L., Blacklock, J., Xie, L., Carroll, S., Oupicky, D. & Mao, G., 2019, Methods in Molecular Biology. Humana Press Inc., p. 199-209 11 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter

Metabolomics analyses from tissues in parkinson’s disease

Bhinderwala, F., Lei, S., Woods, J., Rose, J., Marshall, D. D., Riekeberg, E., Leite, A. D. L., Morton, M., Dodds, E. D., Franco, R. & Powers, R., 2019, Methods in Molecular Biology. Humana Press Inc., p. 217-257 41 p. (Methods in Molecular Biology; vol. 1996).

Research output: Chapter in Book/Report/Conference proceedingChapter

Methods for determining the reduction potentials of flavin enzymes

Christgen, S. L., Becker, S. M. & Becker, D. F., 2019, Methods in Enzymology. Palfey, B. A. (ed.). Academic Press Inc., p. 1-25 25 p. (Methods in Enzymology; vol. 620).

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular and physiological evaluation of pancreatic cancer-induced cachexia

Shukla, S. K., Dasgupta, A., Mulder, S. E. & Singh, P. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 321-333 13 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Mouse models of pancreatic cancer: An ever-emerging arm of cancer drug discovery

Ganguly, K., Batra, S. K. & Kaur, S., Apr 17 2019, Animal Models in Cancer Drug Discovery. Elsevier, p. 249-266 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

NMR Metabolomics Protocols for Drug Discovery

Bhinderwala, F. & Powers, R., 2019, Methods in Molecular Biology. Humana Press Inc., p. 265-311 47 p. (Methods in Molecular Biology; vol. 2037).

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthesis of bioreducible polycations with controlled topologies

You, Y. Z., Yan, J. J., Yu, F., Yu, Z. Q. & Oupicky, D., 2019, Methods in Molecular Biology. Humana Press Inc., p. 27-38 12 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter

Thermodynamic contributions for the inclusion of bulges and mismatches in dna hairpin loops

Shikiya, R. & Marky, L. A., Jun 5 2019, A Closer Look at Calorimetry. Nova Science Publishers, Inc., p. 31-60 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Utilizing split-NanoLuc luciferase fragments as luminescent probes for protein solubility in living cells

Nelson, T. J., Zhao, J. & Stains, C. I., 2019, Methods in Enzymology. Shukla, A. K. (ed.). Academic Press Inc., p. 55-66 12 p. (Methods in Enzymology; vol. 622).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2018

5-fluoropyrimidines

Ryan, D. P., Grem, J. & Chabner, B. A., Jan 1 2018, Cancer Chemotherapy, Immunotherapy and Biotherapy: Principles and Practice, Sixth Edition. Wolters Kluwer Health, p. 114-135 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Assembly of centromere chromatin for characterization by high-speed time-lapse atomic force microscopy

Stumme-Diers, M. P., Banerjee, S., Sun, Z. & Lyubchenko, Y. L., 2018, Methods in Molecular Biology. Humana Press Inc., p. 225-242 18 p. (Methods in Molecular Biology; vol. 1814).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Burnout, substance abuse, and suicide: A surgical perspective

Are, C., Caniglia, A. J., Sharma, A. & Gold, J. P., Jan 1 2018, Practical Ethics for the Surgeon. Wolters Kluwer Health Adis (ESP), p. 229-262 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cardiac toxicity

Yahalom, J. & Lunning, M. A., Nov 16 2018, DeVita, Hellman, and Rosenberg's Cancer: Principles & Practice of Oncology. Wolters Kluwer Health Pharma Solutions (Europe) Ltd, p. 2120-2128 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Diagnosis and treatment of non-hodgkin’s lymphoma of adults

Crockett, D. G., Armitage, J. O. & Vose, J. M., Jan 1 2018, Neoplastic Diseases of the Blood. Springer International Publishing, p. 951-973 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Esterases

Lockridge, O., Quinn, D. M. & Radić, Z., 2018, Biotransformation. Elsevier Inc., Vol. 10-15. p. 277-307 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Evaluating the metabolic impact of hypoxia on pancreatic cancer cells

Murthy, D., Vernucci, E., Goode, G., Abrego, J. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 81-93 13 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Evaluation of macrophage polarization in pancreatic cancer microenvironment under hypoxia

Attri, K. S., Mehla, K. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 265-276 12 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Hypoxia-induced metabolomic alterations in pancreatic cancer cells

Gunda, V., Kumar, S., Dasgupta, A. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 95-105 11 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

Hypoxia-mediated in vivo tumor glucose uptake measurement and analysis

Shukla, S. K., Mulder, S. E. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-113 7 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Infections in cancer

Zimmer, A. J. & Freifeld, A. G., Jun 18 2018, Management of Infections in the Immunocompromised Host. Springer International Publishing, p. 183-194 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lipoma and other benign lipomatous tumors

McGarry, S. V., Jan 1 2018, Orthopaedic Knowledge Update: Musculoskeletal Tumors 3. Wolters Kluwer Health, p. 257-262 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mantle Cell Lymphoma

Bhatt, V. R., Valdes, R. F. & Vose, J. M., 2018, Hematology: Basic Principles and Practice. Elsevier Inc., p. 1298-1308.e2

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropathogenesis of human immunodeficiency virus infection

Sillman, B., Woldstad, C., Mcmillan, J. & Gendelman, H. E., 2018, Handbook of Clinical Neurology. Elsevier B.V., p. 21-40 20 p. (Handbook of Clinical Neurology; vol. 152).

Research output: Chapter in Book/Report/Conference proceedingChapter

11 Scopus citations

Polymer nanoarray approach for the characterization of biomolecular interactions

Maity, S., Viazovkina, E., Gall, A. & Lyubchenko, Y. L., 2018, Methods in Molecular Biology. Humana Press Inc., p. 63-74 12 p. (Methods in Molecular Biology; vol. 1814).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Role of preoperative biliary stenting and preoperative preparation before pancreaticoduodenectomy

Batra, R. & Are, C., Jun 1 2018, Surgery for Pancreatic and Periampullary Cancer: Principles and Practice. Springer Singapore, p. 57-64 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Supported lipid bilayers for atomic force microscopy studies

Lv, Z., Banerjee, S., Zagorski, K. & Lyubchenko, Y. L., 2018, Methods in Molecular Biology. Humana Press Inc., p. 129-143 15 p. (Methods in Molecular Biology; vol. 1814).

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Scopus citations

Transcriptional profiling using RNA-seq to study hypoxia-mediated gene regulation

Shukla, S. K., King, R. J. & Singh, P. K., 2018, Methods in Molecular Biology. Humana Press Inc., p. 55-66 12 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Unfolding thermodynamics of nucleic acids: Determining heat capacity effects using differential scanning calorimetry (DSC)

Carr, C. E., Reiling-Steffensmeier, C., Khutsishvili, I. & Marky, L. A., Jan 1 2018, Differential Scanning Calorimetry: Basics and Applications. Nova Science Publishers, Inc., p. 1-41 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Urology: Diseases of the genitourinary system

Kim, I. Y. & Lagrange, C. A., Nov 27 2018, Essentials of General Surgery and Surgical Specialties: Sixth Edition. Wolters Kluwer Health Adis (ESP), p. 1158-1232 75 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

ADMET properties: Overview and current topics

Zhong, H. A., Aug 9 2017, Drug Design: Principles and Applications. Springer Singapore, p. 113-133 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Atomic force microscope for topographic studies

Lyubchenko, Y. L., Jan 1 2017, An Introduction to Single Molecule Biophysics. CRC Press, p. 21-78 58 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Challenges and complexities in quantifying the behavioral health workforce: Implications for tracking the behavioral health workforce in rural communities

Trout, K. E., Chen, L. W., Palm, D., Deras, M. & Watanabe-Galloway, S., Jan 1 2017, Advances in Business and Management. Nova Science Publishers, Inc., Vol. 11. p. 91-117 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lipid inflammatory mediators in cancer progression and therapy

Khadge, S., Sharp, J. G., McGuire, T. R., Thiele, G. M. & Talmadge, J. E., 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 145-156 12 p. (Advances in Experimental Medicine and Biology; vol. 1036).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Magnetic tweezers

Bianco, P. R., Lyubchenko, Y. L. & Sun, Z., Jan 1 2017, An Introduction to Single Molecule Biophysics. CRC Press, p. 115-139 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanism of action of tethered antimicrobial peptides

Wang, G. & Mishra, B., Jan 1 2017, Handbook of Antimicrobial Coatings. Elsevier, p. 559-566 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanisms of global and region-specific control of mutagenesis

Pavlov, Y. I., Lada, A. G., Grabow, C. & Stepchenkova, E. I., Jan 1 2017, Genetics, Evolution and Radiation: Crossing Borders, The Interdisciplinary Legacy of Nikolay W. Timofeeff-Ressovsky. Springer International Publishing, p. 55-76 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Metabolic bone disease in adults with short bowel syndrome

Mack, L. R. & Rochling, F. A., Jan 1 2017, Short Bowel Syndrome: Practical Approach to Management. CRC Press, p. 97-114 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Non-viral delivery of nucleic acid complexes

Kumar, V., Wen, D. & Mahato, R. I., Jan 1 2017, Comprehensive Biomaterials II. Elsevier, p. 506-526 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pathology of experimental bladder cancer in rodents

Cohen, S. M., Jan 1 2017, Pathology of Bladder Cancer. CRC Press, p. 1-40 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

55 Scopus citations