Research Output

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2020

MUC16 as a potential target for the surgical detection of pancreatic cancer

Olson, M. T., Wojtynek, N. E., Caffrey, T. C., Radhakrishnan, P., Ly, Q. P., Talmon, G. A., Hollingsworth, M. A. & Mohs, A. M., 2020, Molecular-Guided Surgery: Molecules, Devices, and Applications VI. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 112220M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11222).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Efficacy of indocyanine green-loaded hyaluronic acid nanoparticles for the surgical resection of orthotopic breast tumors

Wojtynek, N. E., Holmes, M. B., Olson, M. T., Baher, F., Silva, E. & Mohs, A. M., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108621G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Engineering hydrogel based cancer microenvironments for in vitro breast cancer cell culture and therapeutics screening

Shi, W., Kuss, M. A., Mohapatra, B., Mirza, S., Band, H., Band, V. & Duan, B., 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mineralized short nanofibers coupled with BMP-2 peptides for alveolar bone regeneration

Xie, J., Boda, S. K., Wang, H., Wang, D. & Reinhardt, R. A., 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Novel intra-operative peripheral nerve agent for fluorescence guided imaging

Liu, X., Lovell, P., Cruz, D. R., Houser, L., Lagrange, C. A. & Mohs, A. M., 2019, Clinical and Translational Neurophotonics 2020. Madsen, S. J., Yang, V. X. D. & Thakor, N. V. (eds.). SPIE, 112250J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11225).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surgical imaging of pancreatic cancer using polysaccharide-delivered near infrared fluorophores

Qi, B., Crawford, A. J., Wojtynek, N. E., Hollingsworth, M. A., Ly, Q. P. & Mohs, A. M., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Comparing biocompatibility of titanium orthopaedic implants with and without an ultra-thin coating of TiO2 by Ion beam assisted deposition

Miralami, R., Namavar, F., Thiele, G. M., Sharp, J. G. & Garvin, K. L., 2016, Biotech, Biomaterials and Biomedical - TechConnect Briefs 2016. Laudon, M., Case, F., Case, F., Romanowicz, B. & Romanowicz, B. (eds.). TechConnect, p. 43-46 4 p. (Advanced Materials - TechConnect Briefs 2016; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

Qualitative and quantitative analysis of endocytic recycling

Reineke, J. B., Xie, S., Naslavsky, N. & Caplan, S., 2015, Methods in Cell Biology: Sorting and Recycling Endosomes, 2015. Guo, W. (ed.). Academic Press Inc., p. 139-155 17 p. (Methods in Cell Biology; vol. 130).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations
2014

Work injuries among therapists in physical rehabilitation

McCrory, B., Burnfield, J. M., Darragh, A. R., Meza, J. L., Irons, S. L., Chernyavskiy, P., Link, A. M. & Brusola, G., 2014, 2014 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2014. Human Factors an Ergonomics Society Inc., p. 1072-1076 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 2014-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2013

Comparing biocompatibility of nanocrystalline titanium and titanium-oxide with microcrystalline titanium

Miralami, R., Koepsell, L., Premaraj, T., Kim, B., Thiele, G. M., Sharp, J. G., Garvin, K. L. & Namavar, F., 2013, Materials Research Society Symposium Proceedings. Materials Research Society, Vol. 1569.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Examination of muscle effort and fatigue during virtual and actual laparoscopic surgical skills practice

Ehlers, L., Suh, I. H., Lagrange, C., Oleynikov, D. & Siu, K. C., 2013, Studies in Health Technology and Informatics. IOS Press, Vol. 184. p. 122-128 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Hand instrument performance in a single site surgery simulator with novices

Riggle, J. D., Miller, E. E., McCrory, B., Meitl, A., Lim, E., Hallbeck, M. S. & LaGrange, C. A., 2013, Proceedings of the Human Factors and Ergonomics Society Annual Meeting, HFES 2013. p. 1522-1526 5 p. (Proceedings of the Human Factors and Ergonomics Society).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nanostructurally designed ultra-hydrophilic hard ceramic oxide coatings for orthopaedic application

Namavar, F., Sabirianov, R. F., Zhang, J., Cheung, C. L., Blatchley, C., Miralami, R., Sharp, J. G. & Garvin, K. L., 2013, Titanium Dioxide: Fundamentals and Applications. Materials Research Society, p. 23-28 6 p. (Materials Research Society Symposium Proceedings; vol. 1578).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2012

Engineered nanostructured coatings for enhanced protein adsorption and cell growth

Namavar, F., Rubinstein, A., Sabirianov, R. F., Thiele, G. M., Sharp, J. G., Pokharel, U., Namavar, R. M. & Garvin, K. L., 2012, Gels and Biomedical Materials. p. 119-125 7 p. (Materials Research Society Symposium Proceedings; vol. 1418).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations
2011

Breast cancer subtypes: Two decades of journey from cell culture to patients

Zhao, X., Gurumurthy, C. B., Malhotra, G., Mirza, S., Mohibi, S., Bele, A., Quinn, M. G., Band, H. & Band, V., 2011, Human Cell Transformation: Role of Stem Cells and the Microenvironment. Rhim, J. & Kremer, R. (eds.). p. 135-144 10 p. (Advances in Experimental Medicine and Biology; vol. 720).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Mucin O-glycan branching enzymes: Structure, function, and gene regulation

Cheng, P-W. & Radhakrishnan, P., 2011, The Molecular Immunology of Complex Carbohydrates-3. Wu, A. (ed.). p. 465-492 28 p. (Advances in Experimental Medicine and Biology; vol. 705).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

16 Scopus citations
2010

Influence of time period and birth cohort effects on age-specific incidence rates of pancreatic and kidney cancer

Mdzinarishvili, T., Gleason, M. X. & Sherman, S., 2010, Proceedings of the 43rd Annual Hawaii International Conference on System Sciences, HICSS-43. 5428372. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2009

Altering the motivational function of nicotine through conditioning processes

Bevins, R. A., 2009, The Motivational Impact of Nicotine and Its Role in Tobacco Use. Bevins, R. & Caggiula, A. (eds.). p. 111-129 19 p. (Nebraska Symposium on Motivation; vol. 55).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations

An image warping technique for rodent brain MRI-histology registration based on thin-plate splines with landmark optimization

Liu, Y., Uberti, M., Dou, H., Mosley, R. L., Gendelman, H. E. & Boska, M. D., 2009, Medical Imaging 2009 - Image Processing. 72592K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7259).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Estrogen mediation of breast tumor formation involves estrogen receptor-dependent, as well as independent, genotoxic effects

Santen, R., Cavalieri, E., Rogan, E., Russo, J., Guttenplan, J., Ingle, J. & Yue, W., Feb 2009, Steroid Enzymes and Cancer. Blackwell Publishing Inc., p. 132-140 9 p. (Annals of the New York Academy of Sciences; vol. 1155).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

61 Scopus citations

Nicotine, tobacco use, and the 55th Nebraska symposium on motivation

Bevins, R. A. & Caggiula, A. R., 2009, The Motivational Impact of Nicotine and Its Role in Tobacco Use. Bevins, R. & Caggiula, A. (eds.). p. 1-3 3 p. (Nebraska Symposium on Motivation; vol. 55).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

PCCR study for Italy: Meat consumption, preparation, and meat-derived carcinogens on the risk of sporadic pancreatic cancer

Haynatzki, G., Haynatzka, V., Ghiorzo, P. & Sherman, S., 2009, Proceedings of the 42nd Annual Hawaii International Conference on System Sciences, HICSS. 4755577. (Proceedings of the 42nd Annual Hawaii International Conference on System Sciences, HICSS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Registration of in vivo MR to histology of rodent brains using blockface imaging

Uberti, M., Liu, Y., Dou, H., Mosley, R. L., Gendelman, H. E. & Boska, M., 2009, Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging. 726213. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7262).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Stereoselective synthesis of quaternary, α-vinyl amino acids and their α-(2'Z-fluoro)vinyl congeners: Promising candidates for PLP enzyme inactivation

Berkowitz, D. B., Karukurichi, K. R., De La Salud-Bea, R., Maiti, G., McFadden, J. M. & Morris, M. L., Jun 14 2009, Asymmetric Synthesis and Application of a-Amino Acids. American Chemical Society, p. 288-303 16 p. (ACS Symposium Series; vol. 1009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Use of average mutual information for studying changes in HIV populations

Sayood, K., Hoffman, F. & Wood, C., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3861-3864 4 p. 5332579. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2008

Activation of immune cells by polyanhydride adjuvants: Potential for novel cancer vaccines

Torres, M. P., Mallapragada, S. K., Jain, M., Batra, S. K. & Narasimhan, B., 2008, 8th World Biomaterials Congress 2008. 1 p. (8th World Biomaterials Congress 2008; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Decision fusion of machine learning models to predict radiotherapyinduced lung pneumonitis

Das, S. K., Chen, S., Deasy, J. O., Zhou, S., Yin, F. F. & Marks, L. B., 2008, Proceedings - 7th International Conference on Machine Learning and Applications, ICMLA 2008. p. 545-550 6 p. 4725027. (Proceedings - 7th International Conference on Machine Learning and Applications, ICMLA 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

I2MeDS: Intelligent Integrated Medical Data System

Uher, J., Sadofsky, D., Youn, J. H., Ali, H., Sharif, H., Deogun, J. & Hinrichs, S. H., 2008, BioMedical Engineering and Informatics: New Development and the Future - Proceedings of the 1st International Conference on BioMedical Engineering and Informatics, BMEI 2008. p. 631-637 7 p. 4548746. (BioMedical Engineering and Informatics: New Development and the Future - Proceedings of the 1st International Conference on BioMedical Engineering and Informatics, BMEI 2008; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Introduction to advanced bioinformatics tools for translational research minitrack

Ali, H. H. & Sherman, S., 2008, Proceedings of the 41st Annual Hawaii International Conference on System Sciences 2008, HICSS. 4438931. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

RFLP-WAVE analysis for rapid identification of medically important fungi

Bastola, D. R., Chandio, S. H., Iwen, P. C., Hinrichs, S. H. & Ali, H., 2008, Proceedings of the 41st Annual Hawaii International Conference on System Sciences 2008, HICSS. 4438933. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The design and synthesis of an osteotropic polyrotaxane for the treatment of skeletal diseases

Hein, C. D., Liu, X. M. & Wang, D., 2008, American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 1 ed. Vol. 49. p. 248-249 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2007

A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3

Ohno, Y., Nishibori, E., Narumi, T., Koishi, T., Tahirov, T. H., Ago, H., Miyano, M., Himeno, R., Ebisuzaki, T., Sakata, M. & Taiji, M., 2007, Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, SC'07. 56. (Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, SC'07).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

A comparison of statistical approaches for genetic anticipation with application to pancreatic cancer

Havnatzki, G. R., Brand, R. E., Haynatzka, V. R., Lynch, H. T. & Sherman, S. A., 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. 4076630. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Introduction to Mini-track: Advanced data management tools for biomedical informatics

Ali, H. H. & Sherman, S., 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. 4076626. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Virtual CGH: Prediction of novel regions of chromosomal alterations in tumor from gene expression profiling

Geng, H., Iqbal, J., Deng, X., Chan, W. C. & Ali, H., 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. 4076629. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

WLAN-based real-time asset tracking system in healthcare environments

Youn, J. H., Ali, H., Sharif, H., Deogun, J., Uher, J. & Hinrichs, S. H., 2007, 3rd IEEE International Conference on Wireless and Mobile Computing, Networking and Communications, WiMob 2007. 4390865. (3rd IEEE International Conference on Wireless and Mobile Computing, Networking and Communications, WiMob 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations
2006

Catechol quinones of estrogens in the initiation of breast, prostate, and other human cancers: Keynote lecture

Cavalieri, E. & Rogan, E., Nov 2006, Estrogens and Human Diseases. Blackwell Publishing Inc., p. 286-301 16 p. (Annals of the New York Academy of Sciences; vol. 1089).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

81 Scopus citations

Designing an emergency response system for electronic laboratory diagnostics consultation

Fruhling, A., Sambol, A., Hinrichs, S. & Devreede, G. J., 2006, Proceedings of the 39th Annual Hawaii International Conference on System Sciences, HICSS'06. p. 37a 1579365. (Proceedings of the Annual Hawaii International Conference on System Sciences; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

GenomeBlast: A Web tool for small genome comparison

Lu, G., Jiang, L., Kotalik, R. M., Rowley, T. W., Zhang, L., Chen, X. & Moriyama, E. N., 2006, First International Multi- Symposiums on Computer and Computational Sciences, IMSCCS'06. p. 136-141 6 p. 1636030. (First International Multi- Symposiums on Computer and Computational Sciences, IMSCCS'06; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

New computational models for electrostatics of macromolecules in solvents

Dai, J., Tsukerman, I., Rubinstein, A. & Sherman, S., 2006, 12th Biennial IEEE Conference on Electromagnetic Field Computation, CEFC 2006. 1633152. (12th Biennial IEEE Conference on Electromagnetic Field Computation, CEFC 2006).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Searching for smart durable coatings to promote bone marrow stromal cell growth while preventing biofilm formation

Namavar, F., Jackson, J. D., Sharp, J. G., Mann, E. E., Bayles, K., Barry, C. L. C., Feschuk, C. A., Varma, S., Haider, H. & Garvin, K. L., 2006, Biofilm-Material Interactions: New Tools, Technologies and Opportunities. Materials Research Society, p. 1-7 7 p. (Materials Research Society Symposium Proceedings; vol. 954).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Towards an evaluation of a microbiology laboratory system

Johnson, N., Fruhling, A., Sambol, A. & Hinrichs, S., 2006, Association for Information Systems - 12th Americas Conference On Information Systems, AMCIS 2006. p. 2692-2696 5 p. (Association for Information Systems - 12th Americas Conference On Information Systems, AMCIS 2006; vol. 5).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2005

From context-dependence of mutations to molecular mechanisms of mutagenesis

Rogozin, I. B., Malyarchuk, B. A., Pavlov, Y. & Milanesi, L., 2005, Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005. p. 409-420 12 p. (Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Scopus citations

Identification of genes important in predicting the overall survival in patients with follicular lymphoma

Xiao, L., Fu, K., Iqbal, J., Chan, W. C. & Sherman, S., 2005, Proceedings of the 2005 International Conference on Data Mining, DMIN'05. p. 181-186 6 p. (Proceedings of the 2005 International Conference on Data Mining, DMIN'05).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Identification of pathogenic fungi using computational and molecular biological approaches

Chandio, S. H., Bastola, D. R., Iwen, P. C. & Hinrichs, S. H., 2005, 2005 IEEE International Conference on Electro Information Technology. 1627000. (2005 IEEE International Conference on Electro Information Technology; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Protein motif searching through similar enriched parikh vector identification

Huang, X., Ali, H., Sadanandam, A. & Singh, R., 2005, Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering. p. 285-289 5 p. 1544482. (Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Using databases and computational techniques to infer the function of novel proteins

Ramanathan, V., Mercier, K. A., Powers, R. & Revesz, P. Z., 2005, 2005 IEEE International Conference on Electro Information Technology. 1626981. (2005 IEEE International Conference on Electro Information Technology; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2004

High-throughput computational and experimental biology strategy in identifying tumor expressing CAMs

Sadanandam, A., Varney, M. L. & Singh, R. K., 2004, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. p. 450-451 2 p. (Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Identification of Mycobacterium species using curated custom databases

Kuyper, D., Ali, H. H., Mohamed, A. M. & Hinrichs, S. H., 2004, Proceedings - 18th International Parallel and Distributed Processing Symposium, IPDPS 2004 (Abstracts and CD-ROM). p. 2679-2685 7 p. (Proceedings - International Parallel and Distributed Processing Symposium, IPDPS 2004 (Abstracts and CD-ROM); vol. 18).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

On the alleviation of side effect of outliers to Fisher's Discriminate Criterion in micro-array data analysis

Cao, K., Zhu, Q., Iqbal, J. & Chan, J. W. C., 2004, Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04. Valafar, F. & Valafar, H. (eds.). p. 263-269 7 p. (Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04).

Research output: Chapter in Book/Report/Conference proceedingConference contribution