Research Output

2020

A global database of soil nematode abundance and functional group composition

van den Hoogen, J., Geisen, S., Wall, D. H., Wardle, D. A., Traunspurger, W., de Goede, R. G. M., Adams, B. J., Ahmad, W., Ferris, H., Bardgett, R. D., Bonkowski, M., Campos-Herrera, R., Cares, J. E., Caruso, T., de Brito Caixeta, L., Chen, X., Costa, S. R., Creamer, R., da Cunha e Castro, J. M., Dam, M. & 54 others, Djigal, D., Escuer, M., Griffiths, B. S., Gutiérrez, C., Hohberg, K., Kalinkina, D., Kardol, P., Kergunteuil, A., Korthals, G., Krashevska, V., Kudrin, A. A., Li, Q., Liang, W., Magilton, M., Marais, M., Martín, J. A. R., Matveeva, E., Mayad, E. H., Mzough, E., Mulder, C., Mullin, P., Neilson, R., Nguyen, T. A. D., Nielsen, U. N., Okada, H., Rius, J. E. P., Pan, K., Peneva, V., Pellissier, L., da Silva, J. C. P., Pitteloud, C., Powers, T. O., Powers, K., Quist, C. W., Rasmann, S., Moreno, S. S., Scheu, S., Setälä, H., Sushchuk, A., Tiunov, A. V., Trap, J., Vestergård, M., Villenave, C., Waeyenberge, L., Wilschut, R. A., Wright, D. G., Keith, A. M., Yang, J. I., Schmidt, O., Bouharroud, R., Ferji, Z., van der Putten, W. H., Routh, D. & Crowther, T. W., Dec 1 2020, In : Scientific Data. 7, 1, 103.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Genetic diversity of potassium ion channel proteins encoded by chloroviruses that infect chlorella heliozoae

Murry, C. R., Agarkova, I. V., Ghosh, J. S., Fitzgerald, F. C., Carlson, R. M., Hertel, B., Kukovetz, K., Rauh, O., Thiel, G. & Van Etten, J. L., Jun 2020, In : Viruses. 12, 6, 678.

Research output: Contribution to journalArticle

Open Access

Multi-location evaluation of fluopyram seed treatment and cultivar on root infection by Fusarium virguliforme, foliar symptom development, and yield of soybean

Sjarpe, D. A., Kandel, Y. R., Chilvers, M. I., Giesler, L. J., Malvick, D. K., McCarville, M. T., Tenuta, A. U., Wise, K. A. & Mueller, D. S., Apr 2 2020, In : Canadian Journal of Plant Pathology. 42, 2, p. 192-202 11 p.

Research output: Contribution to journalArticle

Nutritional factors modulating plant and fruit susceptibility to pathogens: BARD workshop, Haifa, Israel, February 25–26, 2018

Prusky, D., de Assis, L. J., Baroncelli, R., Benito, E. P., del Castillo, V. C., Chaya, T., Covo, S., Díaz-Mínguez, J. M., Donofrio, N. M., Espeso, E., Fernandes, T. R., Goldman, G. H., Judelson, H., Nordzieke, D., Di Pietro, A., Sionov, E., Sukno, S. A., Thon, M. R., Todd, R. B., Voll, L. & 3 others, Xu, J. R., Horwitz, B. A. & Wilson, R. A., Jul 1 2020, In : Phytoparasitica. 48, 3, p. 317-333 17 p.

Research output: Contribution to journalReview article

Open Access

Pathogenic bacteria target plant plasmodesmata to colonize and invade surrounding tissues[CC-by]

Aung, K., Kim, P., Li, Z., Joe, A., Kvitko, B., Alfano, J. R. & Hea, S. Y., 2020, In : Plant Cell. 32, 3, p. 595-611 17 p.

Research output: Contribution to journalArticle

3 Scopus citations

SMRT Sequencing of Paramecium Bursaria Chlorella Virus-1 Reveals Diverse Methylation Stability in Adenines Targeted by Restriction Modification Systems

Coy, S. R., Gann, E. R., Papoulis, S. E., Holder, M. E., Ajami, N. J., Petrosino, J. F., Zinser, E. R., Van Etten, J. L. & Wilhelm, S. W., May 19 2020, In : Frontiers in Microbiology. 11, 887.

Research output: Contribution to journalArticle

Open Access

Terminating rice innate immunity induction requires a network of antagonistic and redox-responsive E3 ubiquitin ligases targeting a fungal sirtuin

Li, G., Qi, X., Sun, G., Rocha, R. O., Segal, L. M., Downey, K. S., Wright, J. D. & Wilson, R. A., Apr 1 2020, In : New Phytologist. 226, 2, p. 523-540 18 p.

Research output: Contribution to journalArticle

The M-band: The underestimated part of the sarcomere

Lange, S., Pinotsis, N., Agarkova, I. & Ehler, E., Mar 2020, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1867, 3, 118440.

Research output: Contribution to journalReview article

Open Access
6 Scopus citations

Tri5 gene expression analysis during postharvest storage of wheat grain from field plots treated with a triazole and a strobilurin fungicide

Bolanos-Carriel, C., Wegulo, S. N., Baenziger, P. S., Eskridge, K. M., Funnell-Harris, D., Mcmaster, N., Schmale, D. G. & Hallen-Adams, H. E., 2020, (Accepted/In press) In : Canadian Journal of Plant Pathology.

Research output: Contribution to journalArticle

2019

A COI DNA barcoding survey of Pratylenchus species in the Great Plains Region of North America

Ozbayrak, M., Todd, T., Harris, T., Higgins, R., Powers, K., Mullin, P., Sutton, L. & Powers, T., 2019, In : Journal of Nematology. 51, 1, e2019-81.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

A Negative Binomial Regression Model of the Observed Population Density of Heterodera glycines after Annual Corn Rotation in Nebraska

Pérez-Hernández, O., Giesler, L. J. & Hilbe, J. M., 2019, In : Plant disease. 103, 12, p. 3093-3100 8 p.

Research output: Contribution to journalArticle

A Plant Immune Receptor Degraded by Selective Autophagy

Yang, F., Kimberlin, A. N., Elowsky, C. G., Liu, Y., Gonzalez-Solis, A., Cahoon, E. B. & Alfano, J. R., Jan 7 2019, In : Molecular Plant. 12, 1, p. 113-123 11 p.

Research output: Contribution to journalArticle

13 Scopus citations

A small viral potassium ion channel with an inherent inward rectification

Eckert, D., Schulze, T., Stahl, J., Rauh, O., Van Etten, J. L., Hertel, B., Schroeder, I., Moroni, A. & Thiel, G., Jan 1 2019, In : Channels. 13, 1, p. 124-135 12 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Chloroviruses

Van Etten, J. L., Agarkova, I. V. & Dunigan, D. D., Dec 23 2019, In : Viruses. 12, 1, 20.

Research output: Contribution to journalReview article

Open Access
1 Scopus citations

Chloroviruses lure hosts through long-distance chemical signaling

Dunigan, D. D., Al-Sammak, M., Al-Ameeli, Z., Agarkova, I. V., DeLong, J. P. & Van Etten, J. L., 2019, In : Journal of virology. 93, 7, e01688.

Research output: Contribution to journalArticle

1 Scopus citations

Cryopreservation of Paramecium bursaria Chlorella Virus-1 during an active infection cycle of its host

Coy, S. R., Alsante, A. N., Van Etten, J. L. & Wilhelm, S. W., Mar 2019, In : PloS one. 14, 3, e0211755.

Research output: Contribution to journalArticle

Open Access

DNA barcoding evidence for the North American presence of alfalfa cyst nematode, Heterodera medicaginis

Powers, T., Skantar, A., Harris, T., Higgins, R., Mullin, P., Hafez, S., Handoo, Z., Todd, T. & Powers, K., 2019, In : Journal of Nematology. 51, 1

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Essential, deadly, enigmatic: Polyamine metabolism and roles in fungal cells

Rocha, R. O. & Wilson, R. A., Jan 2019, In : Fungal Biology Reviews. 33, 1, p. 47-57 11 p.

Research output: Contribution to journalReview article

6 Scopus citations

Genetic evidence for magnaporthe oryzae vitamin b3 acquisition from rice cells

Wilson, R. A., Fernandez, J., Rocha, R. O., Marroquin-Guzman, M. & Wright, J. D., 2019, In : Microbiology (United Kingdom). 165, 11, p. 1198-1202 5 p.

Research output: Contribution to journalArticle

Genome-wide association and gene co-expression network analyses reveal complex genetics of resistance to Goss’s Wilt of Maize

Singh, A., Li, G., Brohammer, A. B., Jarquin, D., Hirsch, C. N., Alfano, J. R. & Lorenz, A. J., 2019, In : G3: Genes, Genomes, Genetics. 9, 10, p. 3139-3152 14 p.

Research output: Contribution to journalArticle

Open Access

Genome-Wide Variation in Potyviruses

Nigam, D., LaTourrette, K., Souza, P. F. N. & Garcia-Ruiz, H., Nov 12 2019, In : Frontiers in Plant Science. 10, 1439.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Host factors against plant viruses

Garcia-Ruiz, H., Nov 1 2019, In : Molecular Plant Pathology. 20, 11, p. 1588-1601 14 p.

Research output: Contribution to journalReview article

Open Access
7 Scopus citations

Microbial community of saline, alkaline lakes in the Nebraska Sandhills based on 16S rRNA gene amplicon sequence data

Fiore, N. A., Dunigan, D. D., Shaffer, J. J., Roberts, R., Antony-Babu, S., Plantz, B. A., Nickerson, K. W., Benson, A. K. & Weberc, K. A., Mar 21 2019, In : Microbiology Resource Announcements. 8, 12, e00063-19.

Research output: Contribution to journalArticle

Open Access

Near-atomic structure of a giant virus

Fang, Q., Zhu, D., Agarkova, I., Adhikari, J., Klose, T., Liu, Y., Chen, Z., Sun, Y., Gross, M. L., Van Etten, J. L., Zhang, X. & Rossmann, M. G., Dec 1 2019, In : Nature communications. 10, 1, 388.

Research output: Contribution to journalArticle

14 Scopus citations

Neonicotinoid seed treatments of soybean provide negligible benefits to US farmers

Mourtzinis, S., Krupke, C. H., Esker, P. D., Varenhorst, A., Arneson, N. J., Bradley, C. A., Byrne, A. M., Chilvers, M. I., Giesler, L. J., Herbert, A., Kandel, Y. R., Kazula, M. J., Hunt, C., Lindsey, L. E., Malone, S., Mueller, D. S., Naeve, S., Nafziger, E., Reisig, D. D., Ross, W. J. & 3 others, Rossman, D. R., Taylor, S. & Conley, S. P., Dec 1 2019, In : Scientific reports. 9, 1, 11207.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

PBS3 Protects EDS1 from Proteasome-Mediated Degradation in Plant Immunity

Chang, M., Zhao, J., Chen, H., Li, G., Chen, J., Li, M., Palmer, I. A., Song, J., Alfano, J. R., Liu, F. & Fu, Z. Q., May 6 2019, In : Molecular Plant. 12, 5, p. 678-688 11 p.

Research output: Contribution to journalArticle

2 Scopus citations

Recent population changes of Fusarium head blight pathogens: drivers and implications

Valverde-Bogantes, E., Bianchini, A., Herr, J. R., Rose, D. J., Wegulo, S. N. & Hallen-Adams, H. E., 2019, (Accepted/In press) In : Canadian Journal of Plant Pathology.

Research output: Contribution to journalReview article

2 Scopus citations

Soil nematode abundance and functional group composition at a global scale

van den Hoogen, J., Geisen, S., Routh, D., Ferris, H., Traunspurger, W., Wardle, D. A., de Goede, R. G. M., Adams, B. J., Ahmad, W., Andriuzzi, W. S., Bardgett, R. D., Bonkowski, M., Campos-Herrera, R., Cares, J. E., Caruso, T., de Brito Caixeta, L., Chen, X., Costa, S. R., Creamer, R., Mauro da Cunha Castro, J. & 50 others, Dam, M., Djigal, D., Escuer, M., Griffiths, B. S., Gutiérrez, C., Hohberg, K., Kalinkina, D., Kardol, P., Kergunteuil, A., Korthals, G., Krashevska, V., Kudrin, A. A., Li, Q., Liang, W., Magilton, M., Marais, M., Martín, J. A. R., Matveeva, E., Mayad, E. H., Mulder, C., Mullin, P., Neilson, R., Nguyen, T. A. D., Nielsen, U. N., Okada, H., Rius, J. E. P., Pan, K., Peneva, V., Pellissier, L., Carlos Pereira da Silva, J., Pitteloud, C., Powers, T. O., Powers, K., Quist, C. W., Rasmann, S., Moreno, S. S., Scheu, S., Setälä, H., Sushchuk, A., Tiunov, A. V., Trap, J., van der Putten, W., Vestergård, M., Villenave, C., Waeyenberge, L., Wall, D. H., Wilschut, R., Wright, D. G., Yang, J. I. & Crowther, T. W., Aug 8 2019, In : Nature. 572, 7768, p. 194-198 5 p.

Research output: Contribution to journalArticle

43 Scopus citations
1 Scopus citations

The N-glycan structures of the antigenic variants of chlorovirus PBCV-1 major capsid protein help to identify the virus-encoded glycosyltransferases

Speciale, I., Duncan, G. A., Unione, L., Agarkova, I. V., Garozzo, D., Jimenez-Barbero, J., Lin, S., Lowary, T. L., Molinaro, A., Noel, E., Laugieri, M. E., Tonetti, M. G., Van Etten, J. L. & De Castro, C., Apr 5 2019, In : Journal of Biological Chemistry. 294, 14, p. 5688-5699 12 p.

Research output: Contribution to journalArticle

2 Scopus citations

What proteomics can reveal about plant–virus interactions? Photosynthesis-related proteins on the spotlight

Souza, P. F. N., Garcia-Ruiz, H. & Carvalho, F. E. L., Mar 15 2019, In : Theoretical and Experimental Plant Physiology. 31, 1, p. 227-248 22 p.

Research output: Contribution to journalArticle

4 Scopus citations
2018

Benefits and profitability of fluopyram-amended seed treatments for suppressing sudden death syndrome and protecting soybean yield a meta-analysis

Kandel, Y. R., McCarville, M. T., Adee, E. A., Bond, J. P., Chilvers, M. I., Conley, S. P., Giesler, L. J., Kelly, H. M., Malvick, D. K., Mathew, F. M., Rupe, J. C., Sweets, L. E., Tenuta, A. U., Wise, K. A. & Mueller, D. S., Jun 2018, In : Plant disease. 102, 6, p. 1093-1100 8 p.

Research output: Contribution to journalArticle

8 Scopus citations

Biophysical approaches to solve the structures of the complex glycan shield of chloroviruses

De Castro, C., Duncan, G. A., Garozzo, D., Molinaro, A., Sturiale, L., Tonetti, M. & Van Etten, J. L., 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 237-257 21 p. (Advances in Experimental Medicine and Biology; vol. 1104).

Research output: Chapter in Book/Report/Conference proceedingChapter

Characterizing soybean vigor and productivity using multiple crop canopy sensor readings

Miller, J. J., Schepers, J. S., Shapiro, C. A., Arneson, N. J., Eskridge, K. M., Oliveira, M. C. & Giesler, L. J., Feb 2018, In : Field Crops Research. 216, p. 22-31 10 p.

Research output: Contribution to journalArticle

7 Scopus citations

Clean low-biomass procedures and their application to ancient ice core microorganisms

Zhong, Z. P., Solonenko, N. E., Gazitúa, M. C., Kenny, D. V., Mosley-Thompson, E., Rich, V. I., Van Etten, J. L., Thompson, L. G. & Sullivan, M. B., May 25 2018, In : Frontiers in Microbiology. 9, MAY, 1094.

Research output: Contribution to journalArticle

4 Scopus citations

Description and distribution of three criconematid nematodes from Hangzhou, Zhejiang Province, China

Munawar, M., Thomas, P. O., Tian, Z., Timothy, H., Rebecca, H. & Zheng, J., 2018, In : Journal of Nematology. 50, 2, p. 183-206 24 p.

Research output: Contribution to journalArticle

5 Scopus citations

Description of Gracilacus paralatescens n. sp. (Nematoda: Paratylenchinae) found from the rhizosphere of Bamboo in Zhejiang, China

Maria, M., Cai, R., Ye, W., Powers, T. O. & Zheng, J., 2018, In : Journal of Nematology. 50, 4, p. 611-622 12 p.

Research output: Contribution to journalArticle

4 Scopus citations

Discovery and identification of meloidogyne species using COI DNA barcoding

Powers, T., Harris, T., Higgins, R., Mullin, P. & Powers, K., 2018, In : Journal of Nematology. 50, 3, p. 399-412 14 p.

Research output: Contribution to journalArticle

4 Scopus citations
4 Scopus citations

First report of Fusarium boothii causing head blight of wheat in the United States

Wegulo, S. N., Valverde-Bogantes, E., Bolanos-Carriel, C., Hallen-Adams, H., Bianchini, A., McMaster, N. & Schmale, D. G., 2018, In : Plant disease. 102, 12, 1 p.

Research output: Contribution to journalComment/debate

2 Scopus citations

Functional analysis of the seven in absentia ubiquitin ligase family in tomato

Wang, W., Fan, Y., Niu, X., Miao, M., Kud, J., Zhou, B., Zeng, L., Liu, Y. & Xiao, F., Mar 2018, In : Plant Cell and Environment. 41, 3, p. 689-703 15 p.

Research output: Contribution to journalArticle

1 Scopus citations

Gene gangs of the chloroviruses: Conserved clusters of collinear monocistronic genes

Seitzer, P., Jeanniard, A., Ma, F., Van Etten, J. L., Facciotti, M. T. & Dunigan, D. D., Oct 20 2018, In : Viruses. 10, 10, 576.

Research output: Contribution to journalArticle

1 Scopus citations

Genes for membrane transport proteins: Not so rare in viruses

Greiner, T., Moroni, A., Van Etten, J. L. & Thiel, G., Sep 2018, In : Viruses. 10, 9, 456.

Research output: Contribution to journalArticle

4 Scopus citations

Genome-wide analysis of genes encoding core components of the ubiquitin system in soybean (Glycine max) reveals a potential role for ubiquitination in host immunity against soybean cyst nematode

Zhang, C., Song, L., Choudhary, M. K., Zhou, B., Sun, G., Broderick, K., Giesler, L. & Zeng, L., Jul 18 2018, In : BMC plant biology. 18, 1, 149.

Research output: Contribution to journalArticle

3 Scopus citations

Immunity-associated programmed cell death as a tool for the identification of genes essential for plant innate immunity

Zhou, B. & Zeng, L., 2018, Methods in Molecular Biology. Humana Press Inc., p. 51-63 13 p. (Methods in Molecular Biology; vol. 1743).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Intermolecular RNA recombination occurs at different frequencies in alternate forms of brome mosaic virus RNA replication compartments

Garcia-Ruiz, H., Diaz, A. & Ahlquist, P., Mar 15 2018, In : Viruses. 10, 3, 131.

Research output: Contribution to journalArticle

6 Scopus citations

MAC3A and MAC3B, two core subunits of the MOS4-associated complex, positively influence miRNA biogenesis

Li, S., Liu, K., Zhou, B., Li, M., Zhang, S., Zeng, L., Zhang, C. & Yu, B., Feb 2018, In : Plant Cell. 30, 2, p. 481-494 14 p.

Research output: Contribution to journalArticle

12 Scopus citations

Metabolic constraints on magnaporthe biotrophy: Loss of de novo asparagine biosynthesis aborts invasive Hyphal growth in the first infected rice cell

Marroquin-Guzman, M., Krotz, J., Appeah, H. & Wilson, R. A., 2018, In : Microbiology (United Kingdom). 164, 12, p. 1541-1546 6 p., 000713.

Research output: Contribution to journalArticle

1 Scopus citations

Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

Wamaitha, M. J., Nigam, D., Maina, S., Stomeo, F., Wangai, A., Njuguna, J. N., Holton, T. A., Wanjala, B. W., Wamalwa, M., Lucas, T., Djikeng, A. & Garcia-Ruiz, H., May 23 2018, In : Virology Journal. 15, 1, 90.

Research output: Contribution to journalArticle

16 Scopus citations