Research Output

2020

A Novel Prediction Model for Discovering Beneficial Effects of Natural Compounds in Drug Repurposing

Chandrababu, S. & Bastola, D., 2020, Bioinformatics and Biomedical Engineering - 8th International Work-Conference, IWBBIO 2020, Proceedings. Rojas, I., Valenzuela, O., Rojas, F., Herrera, L. J. & Ortuño, F. (eds.). Springer, p. 811-824 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12108 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Changes in the community structure of the symbiotic microbes of wild amphibians from the eastern edge of the Tibetan Plateau

Xu, L. L., Chen, H., Zhang, M., Zhu, W., Chang, Q., Lu, G., Chen, Y., Jiang, J. & Zhu, L., Apr 1 2020, In : MicrobiologyOpen. 9, 4, e1004.

Research output: Contribution to journalArticle

Open Access

Computational Approaches for Drug Design: A Focus on Drug Repurposing

Kim, S., Thapa, I., Samadi, F. & Ali, H., 2020, Bioinformatics and Biomedical Engineering - 8th International Work-Conference, IWBBIO 2020, Proceedings. Rojas, I., Valenzuela, O., Rojas, F., Herrera, L. J. & Ortuño, F. (eds.). Springer, p. 213-223 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12108 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Criminal tendency detection from facial images and the gender bias effect

Hashemi, M. & Hall, M., Dec 1 2020, In : Journal of Big Data. 7, 1, 2.

Research output: Contribution to journalArticle

4 Scopus citations

Do Machines Replicate Humans? Toward a Unified Understanding of Radicalizing Content on the Open Social Web

Hall, M., Logan, M., Ligon, G. S. & Derrick, D. C., Mar 1 2020, In : Policy and Internet. 12, 1, p. 109-138 30 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Drivers and barriers to public acceptance of future energy sources and grid expansion in the United States

Sharpton, T., Lawrence, T. & Hall, M., Jul 2020, In : Renewable and Sustainable Energy Reviews. 126, 109826.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Epstein-barr virus epitope-major histocompatibility complex interaction combined with convergent recombination drives selection of diverse T cell receptor α and β repertoires

Gil, A., Kamga, L., Chirravuri-Venkata, R., Aslan, N., Clark, F., Ghersi, D., Luzuriaga, K. & Selin, L. K., Mar 1 2020, In : mBio. 11, 2, e00250-20.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Evolution and genetics of bighead and silver carps: Native population conservation versus invasive species control

Lu, G., Wang, C., Zhao, J., Liao, X., Wang, J., Luo, M., Zhu, L., Bernatzhez, L. & Li, S., Jul 1 2020, In : Evolutionary Applications. 13, 6, p. 1351-1362 12 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Genomes of major fishes in world fisheries and aquaculture: Status, application and perspective

Lu, G. & Luo, M., Jul 2020, In : Aquaculture and Fisheries. 5, 4, p. 163-173 11 p.

Research output: Contribution to journalReview article

Open Access

Impact of age on patients' communication and technology preferences in the era of meaningful use: Mixed methods study

Clarke, M. A., Fruhling, A. L., Sitorius, M., Windle, T. A., Bernard, T. L. & Windle, J. R., Jun 1 2020, In : Journal of medical Internet research. 22, 6, e13470.

Research output: Contribution to journalArticle

Open Access

Lessons from bamboo-eating pandas and their gut microbiome: Gut microbiome flow and applications

Zhang, Z., Hu, T., Lu, G. & Zhu, L., Apr 1 2020, In : Evolutionary Applications. 13, 4, p. 615-619 5 p.

Research output: Contribution to journalArticle

Open Access

MiR-1253 exerts tumor-suppressive effects in medulloblastoma via inhibition of CDK6 and CD276 (B7-H3)

Kanchan, R. K., Perumal, N., Atri, P., Chirravuri Venkata, R., Thapa, I., Klinkebiel, D. L., Donson, A. M., Perry, D., Punsoni, M., Talmon, G. A., Coulter, D. W., Boue’, D. R., Snuderl, M., Nasser, M. W., Batra, S. K., Vibhakar, R. & Mahapatra, S., Jul 1 2020, In : Brain Pathology. 30, 4, p. 732-745 14 p.

Research output: Contribution to journalArticle

1 Scopus citations

MUCIN-4 (MUC4) is a novel tumor antigen in pancreatic cancer immunotherapy

Gautam, S. K., Kumar, S., Dam, V., Ghersi, D., Jain, M. & Batra, S. K., Feb 2020, In : Seminars in Immunology. 47, 101391.

Research output: Contribution to journalReview article

Multi-label classification and knowledge extraction from oncology-related content on online social networks

Hashemi, M. & Hall, M., 2020, (Accepted/In press) In : Artificial Intelligence Review.

Research output: Contribution to journalArticle

On the planarity of validated complexes of model organisms in protein-protein interaction networks

Cooper, K., Cornelius, N., Gasper, W., Bhowmick, S. & Ali, H., 2020, Computational Science – ICCS 2020 - 20th International Conference, Proceedings. Krzhizhanovskaya, V. V., Závodszky, G., Lees, M. H., Sloot, P. M. A., Sloot, P. M. A., Sloot, P. M. A., Dongarra, J. J., Brissos, S. & Teixeira, J. (eds.). Springer, p. 652-666 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12137 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Presence and structure-activity relationship of intrinsically disordered regions across mucins

Carmicheal, J., Atri, P., Sharma, S., Kumar, S., Chirravuri Venkata, R., Kulkarni, P., Salgia, R., Ghersi, D., Kaur, S. & Batra, S. K., Feb 1 2020, In : FASEB Journal. 34, 2, p. 1939-1957 19 p.

Research output: Contribution to journalArticle

Open Access

Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin

Wang, J., Gaughan, S., Lamer, J. T., Deng, C., Hu, W., Wachholtz, M., Qin, S., Nie, H., Liao, X., Ling, Q., Li, W., Zhu, L., Bernatchez, L., Wang, C. & Lu, G., Feb 1 2020, In : Evolutionary Applications. 13, 2, p. 263-277 15 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
Open Access

The Changes in the Frog Gut Microbiome and Its Putative Oxygen-Related Phenotypes Accompanying the Development of Gastrointestinal Complexity and Dietary Shift

Zhang, M., Chen, H., Liu, L., Xu, L., Wang, X., Chang, L., Chang, Q., Lu, G., Jiang, J. & Zhu, L., Mar 3 2020, In : Frontiers in Microbiology. 11, 162.

Research output: Contribution to journalArticle

Open Access

The role of information search in creative problem solving

Harms, M., Reiter-Palmon, R. & Derrick, D. C., Aug 2020, In : Psychology of Aesthetics, Creativity, and the Arts. 14, 3, p. 367-380 14 p.

Research output: Contribution to journalArticle

3 Scopus citations

Usability and cognitive load in the design of a personal health record

Clarke, M. A., Schuetzler, R. M., Windle, J. R., Pachunka, E. & Fruhling, A., Jun 2020, In : Health Policy and Technology. 9, 2, p. 218-224 7 p.

Research output: Contribution to journalArticle

2019

Age-related changes in the gut microbiota of the Chinese giant salamander (Andrias davidianus)

Zhang, M., Gaughan, S., Chang, Q., Chen, H., Lu, G., Wang, X., Xu, L., Zhu, L. & Jiang, J., Jul 2019, In : MicrobiologyOpen. 8, 7, e00778.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A Graph-Theoretic Approach for Identifying Bacterial Inter-correlations and Functional Pathways in Microbiome Data

Kim, S., Thapa, I. & Ali, H. H., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 405-411 7 p. 8621179. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Analyzing and predicting player performance in a quantum cryptography serious game

Abeyrathna, D., Vadla, S., Bommanapally, V., Subramaniam, M., Chundi, P. & Parakh, A., 2019, Games and Learning Alliance - 7th International Conference, GALA 2018, Proceedings. Söbke, H., Gentile, M. & Allegra, M. (eds.). Springer Verlag, p. 267-276 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11385 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

An approach towards designing problem networks in serious games

Parakh, A., Chundi, P. & Subramaniam, M., Aug 2019, IEEE Conference on Games 2019, CoG 2019. IEEE Computer Society, 8848055. (IEEE Conference on Computatonal Intelligence and Games, CIG; vol. 2019-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A novel graph theoretical approach for modeling microbiomes and inferring microbial ecological relationships

Kim, S., Thapa, I., Zhang, L. & Ali, H., Dec 20 2019, In : BMC genomics. 20, 945.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Are the gut microbial systems of giant pandas unstable?

Yao, R., Yang, Z., Zhang, Z., Hu, T., Chen, H., Huang, F., Gu, X., Yang, X., Lu, G. & Zhu, L., Sep 2019, In : Heliyon. 5, 9, e02480.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Barriers to integration of bioinformatics into undergraduate life sciences education: A national study of US life sciences faculty uncover significant barriers to integrating bioinformatics into undergraduate instruction

Williams, J. J., Drew, J. C., Galindo-Gonzalez, S., Robic, S., Dinsdale, E., Morgan, W. R., Triplett, E. W., Burnette, J. M., Donovan, S. S., Fowlks, E. R., Goodman, A. L., Grandgenett, N. F., Goller, C. C., Hauser, C., Jungck, J. R., Newman, J. D., Pearson, W. R., Ryder, E. F., Sierk, M. E., Smith, T. M. & 10 others, Tosado-Acevedo, R., Tapprich, W., Tobin, T. C., Toro-Martinez, A., Welch, L. R., Wilson, M. A., Ebenbach, D., McWilliams, M., Rosenwald, A. G. & Pauley, M. A., 2019, In : PloS one. 14, 11, e0224288.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

CDR3α drives selection of the immunodominant Epstein Barr virus (EBV) BRLF1-specific CD8 T cell receptor repertoire in primary infection

Kamga, L., Gil, A., Song, I., Brody, R., Ghersi, D., Aslan, N., Stern, L. J., Selin, L. K. & Luzuriaga, K., 2019, In : PLoS pathogens. 15, 11, e1008122.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Comparative skin transcriptome of two Oujiang color common carp (Cyprinus carpio var. color) varieties

Du, J., Chen, X., Wang, J., Chen, H., Yue, W., Lu, G. & Wang, C., Feb 15 2019, In : Fish Physiology and Biochemistry. 45, 1, p. 177-185 9 p.

Research output: Contribution to journalArticle

1 Scopus citations
1 Scopus citations

Computer modeling of clonal dominance: Memory-anti-naïve and its curbing by attrition

Castiglione, F., Ghersi, D. & Celada, F., 2019, In : Frontiers in immunology. 10, JUL, 1513.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Detecting and classifying online dark visual propaganda

Hashemi, M. & Hall, M., Sep 2019, In : Image and Vision Computing. 89, p. 95-105 11 p.

Research output: Contribution to journalArticle

5 Scopus citations

Developing a platform to evaluate and assess the security of wearable devices

Hale, M. L., Lotfy, K., Gamble, R. F., Walter, C. & Lin, J., Aug 2019, In : Digital Communications and Networks. 5, 3, p. 147-159 13 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Differences in emotional reactions to social media content: The role of location and content type

Afzali, F. M., Haas, C. & Hall, M., Jun 26 2019, WebSci 2019 - Proceedings of the 11th ACM Conference on Web Science. Association for Computing Machinery, Inc, p. 1-5 5 p. (WebSci 2019 - Proceedings of the 11th ACM Conference on Web Science).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Differential gene expression in chronic wasting disease-positive white-tailed deer (Odocoileus virginianus)

Trone-Launer, E. K., Wang, J., Lu, G., Mateus-Pinilla, N. E., Zick, P. R., Lamer, J. T., Shelton, P. A. & Jacques, C. N., Nov 1 2019, In : Ecology and Evolution. 9, 22, p. 12600-12612 13 p.

Research output: Contribution to journalArticle

Open Access

Evaluating Citizen Scientists’ User Experience and Engagement Using a Mobile Watershed Data Management App

Fruhling, A., Bartelt-Hunt, S. L. & Kolok, A., 2019, HCI International 2019 – Late Breaking Papers - 21st HCI International Conference, HCII 2019, Proceedings. Stephanidis, C. (ed.). Springer Verlag, p. 541-554 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11786 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
1 Scopus citations

Exploratory factor analysis of graphical features for link prediction in social networks

Madahali, L., Najjar, L. & Hall, M., 2019, Springer Proceedings in Complexity. Springer, p. 17-31 15 p. (Springer Proceedings in Complexity).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
Open Access
4 Scopus citations

Graph Model for the Identification of Multi-target Drug Information for Culinary Herbs

Chandrababu, S. & Bastola, D., 2019, Bioinformatics and Biomedical Engineering - 7th International Work-Conference, IWBBIO 2019, Proceedings. Rojas, F., Ortuño, F., Ortuño, F., Valenzuela, O. & Rojas, I. (eds.). Springer Verlag, p. 498-512 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11465 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Habitat use and population structure of the shoal chub (Macrhybopsis hyostoma) in the upper Mississippi River basin

Gaughan, S., Steffensen, K. & Lu, G., Jun 15 2019, In : Environmental Biology of Fishes. 102, 6, p. 901-914 14 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Identifying Structural Changes in Correlation Networks Models of Cancer Gene Expression by Stage

Li, Q., Ghersi, D., Thapa, I., Zhang, L., Ali, H. & Cooper, K., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2075-2082 8 p. 8983069. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Integrated network-based approach for the treatment & prevention of IBD with natural products

Chandrababu, S. & Bastola, D. R., Oct 2019, Proceedings - 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering, BIBE 2019. Institute of Electrical and Electronics Engineers Inc., p. 827-831 5 p. 8941942. (Proceedings - 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering, BIBE 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Investigating information: A qualitative analysis of expert designers’ information representation and structuring behaviors

Damen, N. B. & Toh, C. A., 2019, 31st International Conference on Design Theory and Methodology. American Society of Mechanical Engineers (ASME), (Proceedings of the ASME Design Engineering Technical Conference; vol. 7).

Research output: Chapter in Book/Report/Conference proceedingConference contribution