Research Output

Filter
Article
2020

Changes in the community structure of the symbiotic microbes of wild amphibians from the eastern edge of the Tibetan Plateau

Xu, L. L., Chen, H., Zhang, M., Zhu, W., Chang, Q., Lu, G., Chen, Y., Jiang, J. & Zhu, L., Apr 1 2020, In : MicrobiologyOpen. 9, 4, e1004.

Research output: Contribution to journalArticle

Open Access

Criminal tendency detection from facial images and the gender bias effect

Hashemi, M. & Hall, M., Dec 1 2020, In : Journal of Big Data. 7, 1, 2.

Research output: Contribution to journalArticle

4 Scopus citations

Drivers and barriers to public acceptance of future energy sources and grid expansion in the United States

Sharpton, T., Lawrence, T. & Hall, M., Jul 2020, In : Renewable and Sustainable Energy Reviews. 126, 109826.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Epstein-barr virus epitope-major histocompatibility complex interaction combined with convergent recombination drives selection of diverse T cell receptor α and β repertoires

Gil, A., Kamga, L., Chirravuri-Venkata, R., Aslan, N., Clark, F., Ghersi, D., Luzuriaga, K. & Selin, L. K., Mar 1 2020, In : mBio. 11, 2, e00250-20.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Impact of Age on Patients' Communication and Technology Preferences in the Era of Meaningful Use: Mixed Methods Study

Clarke, M. A., Fruhling, A. L., Sitorius, M., Windle, T. A., Bernard, T. L. & Windle, J. R., Jun 1 2020, In : Journal of medical Internet research. 22, 6, p. e13470

Research output: Contribution to journalArticle

Open Access

Lessons from bamboo-eating pandas and their gut microbiome: Gut microbiome flow and applications

Zhang, Z., Hu, T., Lu, G. & Zhu, L., Apr 1 2020, In : Evolutionary Applications. 13, 4, p. 615-619 5 p.

Research output: Contribution to journalArticle

Open Access

MiR-1253 exerts tumor-suppressive effects in medulloblastoma via inhibition of CDK6 and CD276 (B7-H3)

Kanchan, R. K., Perumal, N., Atri, P., Chirravuri Venkata, R., Thapa, I., Klinkebiel, D. L., Donson, A. M., Perry, D., Punsoni, M., Talmon, G. A., Coulter, D. W., Boue’, D. R., Snuderl, M., Nasser, M. W., Batra, S. K., Vibhakar, R. & Mahapatra, S., Jul 1 2020, In : Brain Pathology. 30, 4, p. 732-745 14 p.

Research output: Contribution to journalArticle

1 Scopus citations

Multi-label classification and knowledge extraction from oncology-related content on online social networks

Hashemi, M. & Hall, M., 2020, (Accepted/In press) In : Artificial Intelligence Review.

Research output: Contribution to journalArticle

Presence and structure-activity relationship of intrinsically disordered regions across mucins

Carmicheal, J., Atri, P., Sharma, S., Kumar, S., Chirravuri Venkata, R., Kulkarni, P., Salgia, R., Ghersi, D., Kaur, S. & Batra, S. K., Feb 1 2020, In : FASEB Journal. 34, 2, p. 1939-1957 19 p.

Research output: Contribution to journalArticle

Open Access

Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin

Wang, J., Gaughan, S., Lamer, J. T., Deng, C., Hu, W., Wachholtz, M., Qin, S., Nie, H., Liao, X., Ling, Q., Li, W., Zhu, L., Bernatchez, L., Wang, C. & Lu, G., Feb 1 2020, In : Evolutionary Applications. 13, 2, p. 263-277 15 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

The Changes in the Frog Gut Microbiome and Its Putative Oxygen-Related Phenotypes Accompanying the Development of Gastrointestinal Complexity and Dietary Shift

Zhang, M., Chen, H., Liu, L., Xu, L., Wang, X., Chang, L., Chang, Q., Lu, G., Jiang, J. & Zhu, L., Mar 3 2020, In : Frontiers in Microbiology. 11, 162.

Research output: Contribution to journalArticle

Open Access
2019

Age-related changes in the gut microbiota of the Chinese giant salamander (Andrias davidianus)

Zhang, M., Gaughan, S., Chang, Q., Chen, H., Lu, G., Wang, X., Xu, L., Zhu, L. & Jiang, J., Jul 2019, In : MicrobiologyOpen. 8, 7, e00778.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A novel graph theoretical approach for modeling microbiomes and inferring microbial ecological relationships

Kim, S., Thapa, I., Zhang, L. & Ali, H., Dec 20 2019, In : BMC genomics. 20, 945.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Are the gut microbial systems of giant pandas unstable?

Yao, R., Yang, Z., Zhang, Z., Hu, T., Chen, H., Huang, F., Gu, X., Yang, X., Lu, G. & Zhu, L., Sep 2019, In : Heliyon. 5, 9, e02480.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Barriers to integration of bioinformatics into undergraduate life sciences education: A national study of US life sciences faculty uncover significant barriers to integrating bioinformatics into undergraduate instruction

Williams, J. J., Drew, J. C., Galindo-Gonzalez, S., Robic, S., Dinsdale, E., Morgan, W. R., Triplett, E. W., Burnette, J. M., Donovan, S. S., Fowlks, E. R., Goodman, A. L., Grandgenett, N. F., Goller, C. C., Hauser, C., Jungck, J. R., Newman, J. D., Pearson, W. R., Ryder, E. F., Sierk, M. E., Smith, T. M. & 10 others, Tosado-Acevedo, R., Tapprich, W., Tobin, T. C., Toro-Martinez, A., Welch, L. R., Wilson, M. A., Ebenbach, D., McWilliams, M., Rosenwald, A. G. & Pauley, M. A., 2019, In : PloS one. 14, 11, e0224288.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

CDR3α drives selection of the immunodominant Epstein Barr virus (EBV) BRLF1-specific CD8 T cell receptor repertoire in primary infection

Kamga, L., Gil, A., Song, I., Brody, R., Ghersi, D., Aslan, N., Stern, L. J., Selin, L. K. & Luzuriaga, K., 2019, In : PLoS pathogens. 15, 11, e1008122.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Comparative skin transcriptome of two Oujiang color common carp (Cyprinus carpio var. color) varieties

Du, J., Chen, X., Wang, J., Chen, H., Yue, W., Lu, G. & Wang, C., Feb 15 2019, In : Fish Physiology and Biochemistry. 45, 1, p. 177-185 9 p.

Research output: Contribution to journalArticle

1 Scopus citations
1 Scopus citations

Computer modeling of clonal dominance: Memory-anti-naïve and its curbing by attrition

Castiglione, F., Ghersi, D. & Celada, F., 2019, In : Frontiers in immunology. 10, JUL, 1513.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Detecting and classifying online dark visual propaganda

Hashemi, M. & Hall, M., Sep 2019, In : Image and Vision Computing. 89, p. 95-105 11 p.

Research output: Contribution to journalArticle

5 Scopus citations

Developing a platform to evaluate and assess the security of wearable devices

Hale, M. L., Lotfy, K., Gamble, R. F., Walter, C. & Lin, J., Aug 2019, In : Digital Communications and Networks. 5, 3, p. 147-159 13 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Differential gene expression in chronic wasting disease-positive white-tailed deer (Odocoileus virginianus)

Trone-Launer, E. K., Wang, J., Lu, G., Mateus-Pinilla, N. E., Zick, P. R., Lamer, J. T., Shelton, P. A. & Jacques, C. N., Nov 1 2019, In : Ecology and Evolution. 9, 22, p. 12600-12612 13 p.

Research output: Contribution to journalArticle

Open Access
Open Access
4 Scopus citations

Habitat use and population structure of the shoal chub (Macrhybopsis hyostoma) in the upper Mississippi River basin

Gaughan, S., Steffensen, K. & Lu, G., Jun 15 2019, In : Environmental Biology of Fishes. 102, 6, p. 901-914 14 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Measuring Tactical Innovation in Terrorist Attacks

Logan, M. K., Ligon, G. S. & Derrick, D. C., Jan 1 2019, In : Journal of Creative Behavior.

Research output: Contribution to journalArticle

Multiplatform biomarker identification using a data-driven approach enables single-sample classification

Zhang, L., Thapa, I., Haas, C. & Bastola, D., Nov 21 2019, In : BMC bioinformatics. 20, 1, 1 p.

Research output: Contribution to journalArticle

Open Access

Semantic hierarchies for extracting, modeling, and connecting compliance requirements in information security control standards

Hale, M. L. & Gamble, R. F., Sep 1 2019, In : Requirements Engineering. 24, 3, p. 365-402 38 p.

Research output: Contribution to journalArticle

2 Scopus citations

Two-Sided Matching for mentor-mentee allocations—Algorithms and manipulation strategies

Haas, C. & Hall, M., Mar 2019, In : PloS one. 14, 3, e0213323.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
Open Access

Usability and cognitive load in the design of a personal health record

Clarke, M. A., Schuetzler, R. M., Windle, J. R., Pachunka, E. & Fruhling, A., 2019, (Accepted/In press) In : Health Policy and Technology.

Research output: Contribution to journalArticle

2018

Adaptive evolution to a high purine and fat diet of carnivorans revealed by gut microbiomes and host genomes

Zhu, L., Wu, Q., Deng, C., Zhang, M., Zhang, C., Chen, H., Lu, G. & Wei, F., May 2018, In : Environmental microbiology. 20, 5, p. 1711-1722 12 p.

Research output: Contribution to journalArticle

8 Scopus citations

Bioinformatics core competencies for undergraduate life sciences education

Wilson Sayres, M. A., Hauser, C., Sierk, M., Robic, S., Rosenwald, A. G., Smith, T. M., Triplett, E. W., Williams, J. J., Dinsdale, E., Morgan, W. R., Burnette, J. M., Donovan, S. S., Drew, J. C., Elgin, S. C. R., Fowlks, E. R., Galindo-Gonzalez, S., Goodman, A. L., Grandgenett, N. F., Goller, C. C., Jungck, J. R. & 14 others, Newman, J. D., Pearson, W., Ryder, E. F., Tosado-Acevedo, R., Tapprich, W., Tobin, T. C., Toro-Martínez, A., Welch, L. R., Wright, R., Barone, L., Ebenbach, D., McWilliams, M., Olney, K. C. & Pauley, M. A., Jun 2018, In : PloS one. 13, 6, e0196878.

Research output: Contribution to journalArticle

8 Scopus citations

Cigarette Smoke Induces Stem Cell Features of Pancreatic Cancer Cells via PAF1

Nimmakayala, R. K., Seshacharyulu, P., Lakshmanan, I., Rachagani, S., Chugh, S., Karmakar, S., Rauth, S., Vengoji, R., Atri, P., Talmon, G. A., Lele, S. M., Smith, L. M., Thapa, I., Bastola, D., Ouellette, M. M., Batra, S. K. & Ponnusamy, M. P., Sep 2018, In : Gastroenterology. 155, 3, p. 892-908.e6

Research output: Contribution to journalArticle

20 Scopus citations

Developing a serious game for nurse education

Johnsen, H. M., Fossum, M., Vivekananda-Schmidt, P., Fruhling, A. & Slettebø, Å., Jan 1 2018, In : Journal of gerontological nursing. 44, 1, p. 15-19 5 p.

Research output: Contribution to journalArticle

7 Scopus citations

Disruption of C1galt1 Gene Promotes Development and Metastasis of Pancreatic Adenocarcinomas in Mice

Chugh, S., Barkeer, S., Rachagani, S., Nimmakayala, R. K., Perumal, N., Pothuraju, R., Atri, P., Mahapatra, S., Thapa, I., Talmon, G. A., Smith, L. M., Yu, X., Neelamegham, S., Fu, J., Xia, L., Palanimuthu Ponnusamy, M. & Batra, S. K., Nov 2018, In : Gastroenterology. 155, 5, p. 1608-1624 17 p.

Research output: Contribution to journalArticle

11 Scopus citations

Endangered Père David’s deer genome provides insights into population recovering

Zhu, L., Deng, C., Zhao, X., Ding, J., Huang, H., Zhu, S., Wang, Z., Qin, S., Ding, Y., Lu, G. & Yang, Z., Dec 2018, In : Evolutionary Applications. 11, 10, p. 2040-2053 14 p.

Research output: Contribution to journalArticle

5 Scopus citations

Finding optimal mentor-mentee matches: A case study in applied two-sided matching

Haas, C., Hall, M. & Vlasnik, S. L., Jun 2018, In : Heliyon. 4, 6, e00634.

Research output: Contribution to journalArticle

5 Scopus citations

Motifome comparison between modern human, Neanderthal and Denisovan

Cserhati, M. F., Mooter, M. E., Peterson, L., Wicks, B., Xiao, P., Pauley, M. A. & Guda, C., Jun 18 2018, In : BMC genomics. 19, 1, 472.

Research output: Contribution to journalArticle

2 Scopus citations

Nursing students’ perceptions of a video-based serious game's educational value: A pilot study

Johnsen, H. M., Fossum, M., Vivekananda-Schmidt, P., Fruhling, A. & Slettebø, Å., Mar 2018, In : Nurse Education Today. 62, p. 62-68 7 p.

Research output: Contribution to journalArticle

6 Scopus citations

Perspectives of nurses toward telehealth efficacy and quality of health care: Pilot study

Bashir, A. & Bastola, D. R., May 2018, In : Journal of medical Internet research. 20, 5, e35.

Research output: Contribution to journalArticle

1 Scopus citations

The development and application of bioinformatics core competencies to improve bioinformatics training and education

Mulder, N., Schwartz, R., Brazas, M. D., Brooksbank, C., Gaeta, B., Morgan, S. L., Pauley, M. A., Rosenwald, A., Rustici, G., Sierk, M., Warnow, T. & Welch, L., Feb 2018, In : PLoS computational biology. 14, 2, e1005772.

Research output: Contribution to journalArticle

12 Scopus citations

The Impact of Dynamic Feedback and Personal Budgets on Arousal and Funding Behaviour in Participatory Budgeting

Niemeyer, C., Teubner, T., Hall, M. & Weinhardt, C., Aug 1 2018, In : Group Decision and Negotiation. 27, 4, p. 611-636 26 p.

Research output: Contribution to journalArticle

The Role of Information Search in Creative Problem Solving

Harms, M., Reiter-Palmon, R. & Derrick, D. C., 2018, (Accepted/In press) In : Psychology of Aesthetics, Creativity, and the Arts.

Research output: Contribution to journalArticle

3 Scopus citations

Two critical positions in zinc finger domains are heavily mutated in three human cancer types

Munro, D., Ghersi, D. & Singh, M., Jun 2018, In : PLoS computational biology. 14, 6, e1006290.

Research output: Contribution to journalArticle

4 Scopus citations

Utilizing Twitter data for analysis of chemotherapy

Zhang, L., Hall, M. & Bastola, D., Dec 2018, In : International Journal of Medical Informatics. 120, p. 92-100 9 p.

Research output: Contribution to journalArticle

5 Scopus citations