University of Nebraska-Lincoln

Research Output

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2014

Comparing and optimizing transcriptome assembly pipeline for diploid wheat

Pavlovikj, N., Begcy, K., Behera, S., Campbell, M., Walia, H. & Deogun, J. S., Sep 20 2014, ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 603-604 2 p. (ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Compression of quality factors in next generation sequencing

Nalbantoĝlu, O. U. & Sayood, K., Jan 1 2014, Proceedings - DCC 2014: 2014 Data Compression Conference. Institute of Electrical and Electronics Engineers Inc., 1 p. 6824471. (Data Compression Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Contention-sensing and dynamic spectrum co-use in secondary user Cognitive Radio societies

Wisniewska, A. & Khan, B., Sep 22 2014, IWCMC 2014 - 10th International Wireless Communications and Mobile Computing Conference. Institute of Electrical and Electronics Engineers Inc., p. 157-162 6 p. 6906349. (IWCMC 2014 - 10th International Wireless Communications and Mobile Computing Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Controllable electrical breakdown of multiwall carbon nanotubes

Song, B., Xi, N., Sun, Z., Yang, R., Chen, L. & Chen, H., Nov 26 2014, Proceedings of the IEEE Conference on Nanotechnology. Institute of Electrical and Electronics Engineers Inc., p. 693-697 5 p. 6968133. (Proceedings of the IEEE Conference on Nanotechnology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Design and analysis of a novel articulated drive mechanism for multifunctional notes robot

Shen, T., Warburton, K., Nelson, C. A. & Oleynikov, D., Jan 1 2014, 38th Mechanisms and Robotics Conference. American Society of Mechanical Engineers (ASME), (Proceedings of the ASME Design Engineering Technical Conference; vol. 5A).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Design and implementation of a low-cost embedded Linux gateway for smart home health monitoring

Mittek, M., Carlson, J. D. & Perez, L. C., Jan 1 2014, 2014 IEEE International Conference on Electro/Information Technology, EIT 2014. IEEE Computer Society, p. 485-490 6 p. 6871812. (IEEE International Conference on Electro Information Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Direct numerical simulation of a turbulent lifted flame: Stabilisation mechanism

Karami, S., Hawkes, E. R., Talei, M. & Yu, H., Jan 1 2014, Proceedings of the 19th Australasian Fluid Mechanics Conference, AFMC 2014. Australasian Fluid Mechanics Society, (Proceedings of the 19th Australasian Fluid Mechanics Conference, AFMC 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dynamics modeling signaling pathway regulating egf-induced cell adhesion

Yang, R., Xi, N., Song, B., Sun, Z., Chen, L., Garcia, M. P. & Xi, J., Jan 1 2014, 19th IFAC World Congress IFAC 2014, Proceedings. Xia, X. & Boje, E. (eds.). IFAC Secretariat, p. 7486-7491 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 19).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Effect of polypropylene fiber length on the flexural and compressive strength of compressed stabilized earth blocks

Donkor, P., Obonyo, E., Matta, F. & Erdogmus, E., Jan 1 2014, Construction Research Congress 2014: Construction in a Global Network - Proceedings of the 2014 Construction Research Congress. American Society of Civil Engineers (ASCE), p. 661-670 10 p. (Construction Research Congress 2014: Construction in a Global Network - Proceedings of the 2014 Construction Research Congress).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Effects of droplet diameter on the Leidenfrost temperature of laser processed multiscale structured surfaces

Hassebrook, A., Kruse, C., Wilson, C., Anderson, T., Zuhlke, C., Alexander, D., Gogos, G. & Ndao, S., Sep 4 2014, Thermomechanical Phenomena in Electronic Systems -Proceedings of the Intersociety Conference. Institute of Electrical and Electronics Engineers Inc., p. 452-457 6 p. 6892316. (Thermomechanical Phenomena in Electronic Systems -Proceedings of the Intersociety Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Effects of room acoustics on comprehension of foreign-accented speech by native and non-native English-speaking listeners

Peng, Z., Hanna, K. E., Boyd, B. N. & Wang, L. M., Jan 1 2014, INTERNOISE 2014 - 43rd International Congress on Noise Control Engineering: Improving the World Through Noise Control. Davy, J., Burgess, M., Don, C., Dowsett, L., McMinn, T. & Broner, N. (eds.). Australian Acoustical Society, (INTERNOISE 2014 - 43rd International Congress on Noise Control Engineering: Improving the World Through Noise Control).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Engineering of lipid based nanoparticles as a platform for the delivery of nucleic acids to treat invasive breast cancer

Hayward, S. L. & Kidambi, S., Jan 1 2014, Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting. AIChE, 1 p. (Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enhanced coherent anti-Stokes Raman scattering imaging using silica mircospheres

Huang, X., He, X. N., Xiong, W., Gao, Y., Jiang, L. J., Liu, L., Zhou, Y. S., Silvain, J. F., Jiang, L. & Lu, Y. F., Jan 1 2014, Nanoscale Imaging, Sensing, and Actuation for Biomedical Applications XI. SPIE, 895402. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8954).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Enhanced pool-boiling heat transfer and critical heat flux using femtosecond laser surface processing

Kruse, C. M., Anderson, T., Wilson, C., Zuhlke, C., Alexander, D., Gogos, G. & Ndao, S., Sep 4 2014, Thermomechanical Phenomena in Electronic Systems -Proceedings of the Intersociety Conference. Institute of Electrical and Electronics Engineers Inc., p. 444-451 8 p. 6892315. (Thermomechanical Phenomena in Electronic Systems -Proceedings of the Intersociety Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Evaluating assembly pipeline for transcriptomes

Pavlovikj, N., Bogey, K., Behera, S., Cambell, M., Walia, H. & Deogun, J. S., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 163-168 6 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evaluating distributed platforms for protein-guided scientific workflow

Pavlovikj, N., Begcy, K., Behera, S., Campbell, M., Walia, H. & Deogun, J. S., Jan 1 2014, Proceedings of the XSEDE 2014 Conference: Engaging Communities. Association for Computing Machinery, 38. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evaluating energy loss through recessed lighting fixtures (RLF) in residential buildings through a case study

Na, R., Lin, S., Shen, Z. & Gu, L., Jan 1 2014, Computing in Civil and Building Engineering - Proceedings of the 2014 International Conference on Computing in Civil and Building Engineering. Issa, R. R. & Flood, I. (eds.). American Society of Civil Engineers (ASCE), p. 1691-1698 8 p. (Computing in Civil and Building Engineering - Proceedings of the 2014 International Conference on Computing in Civil and Building Engineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Evaluation on the validity of the assumptions underlying CO 2-based demand-controlled ventilation by a literature review

Lin, X., Lau, J. & Yuill, G. K., Jan 1 2014, ASHRAE Transactions - ASHRAE Winter Conference. PART 1 ed. Amer. Soc. Heating, Ref. Air-Conditoning Eng. Inc., p. 81-87 7 p. (ASHRAE Transactions; vol. 120, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Experimental observation of multiphoton Thomson scattering

Yan, W., Golovin, G., Fruhling, C., Haden, D., Zhang, P., Zhang, J., Zhao, B., Liu, C., Chen, S., Banerjee, S. & Umstadter, D., Jul 21 2014, Frontiers in Optics, FiO 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Exposure of primary hepatocytes to three different types of titanium dioxide nanoparticles induces Reactive Oxygen Species (ROS) production and loss of hepatic functions

Natarajan, V., Davis, C., Hayward, S. L. & Kidambi, S., Jan 1 2014, Environmental Aspects, Applications and Implications of Nanomaterials and Nanotechnology 2014 - Topical Conference at the 2014 AIChE Annual Meeting. AIChE, 1 p. (Environmental Aspects, Applications and Implications of Nanomaterials and Nanotechnology 2014 - Topical Conference at the 2014 AIChE Annual Meeting).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Extreme light: Driver for a table-top electron accelerator and tunable narrowband hard X-ray light source

Umstadter, D., Oct 14 2014, Frontiers in Optics, FiO 2014. Optical Society of America (OSA), (Frontiers in Optics, FiO 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Femtosecond laser microchannels fabrication based on electrons dynamics control using temporally or spatially shaped pulses

Yan, X., Hu, J., Li, X., Xia, B., Liu, P., Lu, Y. & Jiang, L., Jan 1 2014, High-Power Lasers and Applications VII. Walter, R. F., Li, R. & Singh, U. N. (eds.). SPIE, 92660T. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9266).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Free space optical data center architecture design with fully connected racks

Hamza, A. S., Deogun, J. S. & Alexander, D. R., Feb 9 2014, 2014 IEEE Global Communications Conference, GLOBECOM 2014. Institute of Electrical and Electronics Engineers Inc., p. 2192-2197 6 p. 7037133. (2014 IEEE Global Communications Conference, GLOBECOM 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

25 Scopus citations

Free space optical multicast crossbar switch with non-movable switching elements

Hamza, A. S., Deogun, J. S. & Alexander, D. R., Jan 1 2014, Advanced Photonics for Communications - Photonics in Switching, PS 2014. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Free space optical multicast crossbar switch with non-movable switching elements

Hamza, A. S., Deogun, J. S. & Alexander, D. R., Jan 1 2014, Advanced Photonics for Communications - Photonics in Switching, PS 2014. Optical Society of American (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Free space optical multicast crossbar switch with non-movable switching elements

Hamza, A. S., Deogun, J. S. & Alexander, D. R., Jan 1 2014, Advanced Photonics for Communications - Signal Processing in Photonic Communications, SPPCom 2014. Optical Society of American (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Free space optical multicast crossbar switch with non-movable switching elements

Hamza, A. S., Deogun, J. S. & Alexander, D. R., Jan 1 2014, Photonic Networks and Devices 2014. Optical Society of American (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Free space optical multicast crossbar switch with non-movable switching elements

Hamza, A. S., Deogun, J. S. & Alexander, D. R., Jan 1 2014, Integrated Photonics Research, Silicon and Nanophotonics, IPRSN 2014. Optical Society of American (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Frequency domain discrete spring transform: A novel frequency domain steganographic attack

Sharp, A., Qi, Q., Yang, Y., Peng, D. & Sharif, H., Oct 14 2014, 2014 9th International Symposium on Communication Systems, Networks and Digital Signal Processing, CSNDSP 2014. Institute of Electrical and Electronics Engineers Inc., p. 972-976 5 p. 6923970. (2014 9th International Symposium on Communication Systems, Networks and Digital Signal Processing, CSNDSP 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

High precision positioning control for SPM based nanomanipulation: A robust adaptive model reference control approach

Song, B., Sun, Z., Xi, N., Yang, R. & Chen, L., Jan 1 2014, AIM 2014 - IEEE/ASME International Conference on Advanced Intelligent Mechatronics. Institute of Electrical and Electronics Engineers Inc., p. 1658-1663 6 p. 6878322. (IEEE/ASME International Conference on Advanced Intelligent Mechatronics, AIM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Hydrogel based dermal patch with integrated flexible electronics for on demand drug delivery

Bagherifard, S., Tamayol, A., Comotto, M., Mostafalu, P., Akbari, M., Annabi, N., Ghaderi, M., Sonkusale, S., Guagliano, M., Dokmeci, M. R. & Khademhosseini, A., Jan 1 2014, 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014. Chemical and Biological Microsystems Society, p. 2532-2533 2 p. (18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Identifying malware genera using the Jensen-Shannon distance between system call traces

Seideman, J. D., Khan, B. & Vargas, A. C., Dec 29 2014, Proceedings of the 9th IEEE International Conference on Malicious and Unwanted Software, MALCON 2014. Institute of Electrical and Electronics Engineers Inc., p. 1-7 7 p. 6999409. (Proceedings of the 9th IEEE International Conference on Malicious and Unwanted Software, MALCON 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Infrared light field imaging using single carbon nanotube detector

Xi, N., Chen, L., Zhou, Z., Yang, R., Song, B. & Sun, Z., Jan 1 2014, Infrared Technology and Applications XL. SPIE, 90700K. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9070).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

In situ visualization of dynamic interactions of cellulase and cellulose molecules

Song, B., Xi, N., Yang, R., Sun, Z. & Chen, L., Nov 26 2014, 14th IEEE International Conference on Nanotechnology, IEEE-NANO 2014. Institute of Electrical and Electronics Engineers Inc., p. 13-17 5 p. 6968134. (14th IEEE International Conference on Nanotechnology, IEEE-NANO 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Integrating computational and creative thinking to improve learning and performance in CS1

Miller, L. D., Soh, L. K., Chiriacescu, V., Ingraham, E., Shell, D. F. & Hazley, M. P., 2014, SIGCSE 2014 - Proceedings of the 45th ACM Technical Symposium on Computer Science Education. Association for Computing Machinery, p. 475-480 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

20 Scopus citations

In-use activity, fuel use, and emissions of diesel roll-off refuse trucks

Sandhu, G. S., Frey, H. C., Bartelt-Hunt, S. & Jones, E., Jan 1 2014, 107th Air and Waste Management Association Annual Conference and Exhibition, ACE 2014. Air and Waste Management Association, p. 975-985 11 p. (Proceedings of the Air and Waste Management Association's Annual Conference and Exhibition, AWMA; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

In Vivo tumor interstitial fluid pressure measurement using static micro force sensor and mechanical tumor model

Sun, Z., Yang, R., Kovalenko, P., Song, B., Chen, L., Walsh, M. F., Hao, L., Basson, M. D. & Xi, N., Jan 1 2014, AIM 2014 - IEEE/ASME International Conference on Advanced Intelligent Mechatronics. Institute of Electrical and Electronics Engineers Inc., p. 587-592 6 p. 6878142. (IEEE/ASME International Conference on Advanced Intelligent Mechatronics, AIM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Life-cycle cost assessment for bridge management: An application to Nebraska bridges

Hatami, A. & Morcous, G., Jan 1 2014, Computing in Civil and Building Engineering - Proceedings of the 2014 International Conference on Computing in Civil and Building Engineering. Issa, R. R. & Flood, I. (eds.). American Society of Civil Engineers (ASCE), p. 1779-1787 9 p. (Computing in Civil and Building Engineering - Proceedings of the 2014 International Conference on Computing in Civil and Building Engineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Measuring ultralow emittance of laser-driven electron beams with spectroscopic imaging of inverse-Compton scattered x-rays

Golovin, G., Banerjee, S., Liu, C., Chen, S., Zhang, J., Zhao, B., Zhang, P., Veale, M., Wilson, M., Seller, P. & Umstadter, D., Jul 21 2014, Frontiers in Optics, FiO 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modeling self-efficacy using the computational-Unified Learning Model (C-ULM): Implications for computational psychology and cognitive computing

Shell, D. F., Soh, L. K. & Chiriacescu, V., Oct 10 2014, Proceedings of 2014 IEEE 13th International Conference on Cognitive Informatics and Cognitive Computing, ICCI*CC 2014. Fariello, G., Kinsner, W., Wang, Y., Patel, S., Zadeh, L. A. & Patel, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 117-125 9 p. 6921450. (Proceedings of 2014 IEEE 13th International Conference on Cognitive Informatics and Cognitive Computing, ICCI*CC 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Modeling the effects of constituent properties on the mechanical behavior of asphalt mixtures

Thiago, F., Aragão, S. & Kim, Y. R., Jan 1 2014, Asphalt Pavements - Proceedings of the International Conference on Asphalt Pavements, ISAP 2014. Taylor and Francis - Balkema, p. 1365-1374 10 p. (Asphalt Pavements - Proceedings of the International Conference on Asphalt Pavements, ISAP 2014; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Multiscale modeling of asphaltic media considering heterogeneity, viscoelasticity, and nonlinear fracture damage

Lutif, J. E. S., Kim, Y., Souza, F. V. & Allen, D. H., Jan 1 2014, Asphalt Pavements - Proceedings of the International Conference on Asphalt Pavements, ISAP 2014. Taylor and Francis - Balkema, p. 943-952 10 p. (Asphalt Pavements - Proceedings of the International Conference on Asphalt Pavements, ISAP 2014; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

President's message

Lu, Y., Jul 1 2014, LIA Today. 4 ed. Laser Institute of America, Vol. 22. 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

President's message

Lu, Y., Nov 1 2014, LIA Today. 6 ed. Laser Institute of America, Vol. 22. 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Quasi monoenergetic and tunable X-rays by laser compton scattering from laser wakefield e-beam

Powers, N. D., Ghebregziabher, I., Golovin, G., Liu, C., Chen, S., Banerjee, S., Zhang, J. & Umstadter, D., Jan 1 2014, CLEO: Science and Innovations, CLEO_SI 2014. Optical Society of American (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Quasi monoenergetic and tunable X-rays by laser compton scattering from laser Wakefield e-beam

Powers, N. D., Ghebregziabher, I., Golovin, G., Liu, C., Chen, S., Banerjee, S., Zhang, J. & Umstadter, D., Jan 1 2014, CLEO: Applications and Technology, CLEO_AT 2014. Optical Society of American (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Radiation reaction of electrons scattered by intense laser light

Umstadter, D., Oct 14 2014, Frontiers in Optics, FiO 2014. Optical Society of America (OSA), (Frontiers in Optics, FiO 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Real-time scheduling in MapReduce clusters

He, C., Lu, Y. & Swanson, D., Jan 1 2014, Proceedings - 2013 IEEE International Conference on High Performance Computing and Communications, HPCC 2013 and 2013 IEEE International Conference on Embedded and Ubiquitous Computing, EUC 2013. IEEE Computer Society, p. 1536-1544 9 p. 6832098. (Proceedings - 2013 IEEE International Conference on High Performance Computing and Communications, HPCC 2013 and 2013 IEEE International Conference on Embedded and Ubiquitous Computing, EUC 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Recent experience in "Flipping" the kinematics classroom

Nelson, C. A., Jan 1 2014, 38th Mechanisms and Robotics Conference. American Society of Mechanical Engineers (ASME), (Proceedings of the ASME Design Engineering Technical Conference; vol. 5B).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Rutting and cracking modeling of asphalt pavements considering nonlinear viscoelasticity and cohesive zone fracture

Im, S., Ban, H. & Kim, Y. R., Jan 1 2014, Asphalt Pavements - Proceedings of the International Conference on Asphalt Pavements, ISAP 2014. Taylor and Francis - Balkema, p. 775-783 9 p. (Asphalt Pavements - Proceedings of the International Conference on Asphalt Pavements, ISAP 2014; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations