University of Nebraska Medical Center

Research Output

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2020

Clinical evaluation

Armitage, J. O. & Friedberg, J. W., 2020, Hematologic Malignancies. Springer, p. 99-111 13 p. (Hematologic Malignancies).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clinical Manifestations of Insulin Resistance in Youth

Chen, M. E. & Hannon, T. S., 2020, Contemporary Endocrinology. Humana Press Inc., p. 3-17 15 p. (Contemporary Endocrinology).

Research output: Chapter in Book/Report/Conference proceedingChapter

EPCES and EPSVR: Prediction of B-Cell antigenic epitopes on protein surfaces with conformational information

Liang, S., Zheng, D., Yao, B. & Zhang, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 289-297 9 p. (Methods in Molecular Biology; vol. 2131).

Research output: Chapter in Book/Report/Conference proceedingChapter

Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope

Vellichirammal, N. N., Albahrani, A., Li, Y. & Guda, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 13-25 13 p. (Methods in Molecular Biology; vol. 2079).

Research output: Chapter in Book/Report/Conference proceedingChapter

Microfluidic Device for Localized Electroporation

Brooks, J., Jaberi, A. & Yang, R., 2020, Methods in Molecular Biology. Humana Press Inc., p. 91-97 7 p. (Methods in Molecular Biology; vol. 2050).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Neutrophils in the Tumor Microenvironment

Wu, L., Saxena, S. & Singh, R. K., 2020, Advances in Experimental Medicine and Biology. Springer, p. 1-20 20 p. (Advances in Experimental Medicine and Biology; vol. 1224).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Pancreatic Stellate Cells: The Key Orchestrator of The Pancreatic Tumor Microenvironment

Thomas, D. & Radhakrishnan, P., 2020, Advances in Experimental Medicine and Biology. Springer, p. 57-70 14 p. (Advances in Experimental Medicine and Biology; vol. 1234).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Protecting groups in peptide synthesis

Conda-Sheridan, M. & Krishnaiah, M., 2020, Methods in Molecular Biology. Humana Press Inc., p. 111-128 18 p. (Methods in Molecular Biology; vol. 2103).

Research output: Chapter in Book/Report/Conference proceedingChapter

Readily Releasable Stores of Calcium in Neuronal Endolysosomes: Physiological and Pathophysiological Relevance

Lakpa, K. L., Halcrow, P. W., Chen, X. & Geiger, J. D., 2020, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 681-697 17 p. (Advances in Experimental Medicine and Biology; vol. 1131).

Research output: Chapter in Book/Report/Conference proceedingChapter

SVMTriP: A method to predict B-Cell linear antigenic epitopes

Yao, B., Zheng, D., Liang, S. & Zhang, C., 2020, Methods in Molecular Biology. Humana Press Inc., p. 299-307 9 p. (Methods in Molecular Biology; vol. 2131).

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthesis and application of a ratiometric probe for hydrogen peroxide

Yin, R., Fang, Y., Zhou, X. & Stains, C. I., 2020, Methods in Enzymology. Academic Press Inc., p. 23-36 14 p. (Methods in Enzymology; vol. 639).

Research output: Chapter in Book/Report/Conference proceedingChapter

Targeting endoplasmic reticulum stress and autophagy as therapeutic approaches for neurological diseases

Thangaraj, A., Sil, S., Tripathi, A., Chivero, E. T., Periyasamy, P. & Buch, S., 2020, International Review of Cell and Molecular Biology. Kepp, O. & Galluzzi, L. (eds.). Elsevier Inc., p. 285-325 41 p. (International Review of Cell and Molecular Biology; vol. 350).

Research output: Chapter in Book/Report/Conference proceedingChapter

Zinc signals in inflammation

Hall, S. C. & Knoell, D. L., Jan 1 2020, Zinc Signaling. Springer Singapore, p. 279-304 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Aberrant brain dynamics in neuroHIV: Evidence from magnetoencephalographic (MEG) imaging

Wilson, T. W., Lew, B. J., Spooner, R. K., Rezich, M. T. & Wiesman, A. I., 2019, Progress in Molecular Biology and Translational Science. Becker, J. T. & Cohen, A. D. (eds.). Elsevier B.V., p. 285-320 36 p. (Progress in Molecular Biology and Translational Science; vol. 165).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

A computational platform and guide for acceleration of novel medicines and personalized medicine

Melas, I. N., Sakellaropoulos, T., Hur, J., Messinis, D., Guo, E. Y., Alexopoulos, L. G. & Bai, J. P. F., 2019, Methods in Molecular Biology. Humana Press Inc., p. 181-198 18 p. (Methods in Molecular Biology; vol. 1939).

Research output: Chapter in Book/Report/Conference proceedingChapter

Animal models of cancer-associated cachexia

Shukla, S. K. & Singh, P. K., Apr 17 2019, Animal Models in Cancer Drug Discovery. Elsevier, p. 59-74 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemical and cellular assays to assess the effects of acetylation on base excision repair enzymes

Roychoudhury, S., Pramanik, S., Harris, H. L. & Bhakat, K. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 191-206 16 p. (Methods in Molecular Biology; vol. 1983).

Research output: Chapter in Book/Report/Conference proceedingChapter

Calcineurin signaling as a target for the treatment of alcohol abuse and neuroinflammatory disorders

Ronan, P. J., Flynn, S. A. & Beresford, T. P., 2019, Progress in Molecular Biology and Translational Science. Rahman, S. (ed.). Elsevier B.V., p. 125-142 18 p. (Progress in Molecular Biology and Translational Science; vol. 167).

Research output: Chapter in Book/Report/Conference proceedingChapter

Changes in Parameters of Aqueous Humor Dynamics Throughout Life

Toris, C. B., Tye, G. & Pattabiraman, P., 2019, Modeling and Simulation in Science, Engineering and Technology. Birkhauser, p. 161-190 30 p. (Modeling and Simulation in Science, Engineering and Technology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Characterization of DNA bound cyclic GMP-AMP synthase using atomic force microscopy imaging

Lushnikov, A., Hooy, R., Sohn, J. & Krasnoslobodtsev, A., 2019, Methods in Enzymology. Sohn, J. (ed.). Academic Press Inc., p. 157-166 10 p. (Methods in Enzymology; vol. 625).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clinical application of parent-child interaction therapy to promote play and vocalizations in young children with autism spectrum disorder: A case study and recommendations

Shillingsburg, M. A., Hansen, B. & Frampton, S., Jan 1 2019, Handbook of Parent-Child Interaction Therapy for Children on the Autism Spectrum. Springer International Publishing, p. 483-500 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Construction of a Sequence-Defined Transposon Mutant Library in Staphylococcus aureus

Endres, J. L., Yajjala, V. K., Fey, P. D. & Bayles, K. W., 2019, Methods in Molecular Biology. Humana Press Inc., p. 29-37 9 p. (Methods in Molecular Biology; vol. 2016).

Research output: Chapter in Book/Report/Conference proceedingChapter

CRISPR-cas technology as a tool to create animal models for biomedical research

Sundhari, A. K., Reddy, S. K., Walz, K., Gurumurthy, C. B. & Quadros, R. M., Jan 1 2019, Cellular and Animal Models in Human Genomics Research. Elsevier, p. 141-153 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Critical Care Viral Infections

O'Horo, J. C. & Cawcutt, K. A., 2019, Critical Care Nephrology: Third Edition. Elsevier Inc., p. 560-567.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

Deep tissue pressure injury: A clinical perspective regarding a condition that evolves under the skin

Black, J. M. & Berke, C. T., Jan 1 2019, Innovations and Emerging Technologies in Wound Care. Elsevier, p. 171-181 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Design and synthesis of fluorescent activity probes for protein phosphatases

Casey, G. R., Beck, J. R. & Stains, C. I., 2019, Methods in Enzymology. Shukla, A. K. (ed.). Academic Press Inc., p. 29-53 25 p. (Methods in Enzymology; vol. 622).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Design of antimicrobial peptides: Progress made with human cathelicidin LL-37

Wang, G., Narayana, J. L., Mishra, B., Zhang, Y., Wang, F., Wang, C., Zarena, D., Lushnikova, T. & Wang, X., 2019, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 215-240 26 p. (Advances in Experimental Medicine and Biology; vol. 1117).

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Scopus citations

Evaluating the metabolic alterations in pancreatic cancer

Dasgupta, A., Shukla, S. K., Gunda, V., King, R. J. & Singh, P. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 221-228 8 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

Evidence-based models of treatment

Carroll, R. A. & Kodak, T., Jan 1 2019, Handbook of Parent-Child Interaction Therapy for Children on the Autism Spectrum. Springer International Publishing, p. 41-53 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene therapy

Wu, H., Chaudhary, A. K. & Mahato, R. I., Apr 13 2019, Pharmaceutical Biotechnology: Fundamentals and Applications. Springer International Publishing, p. 323-355 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Growth and development in gymnastics

Ritchie, L. K., Ronshaugen, N. & Sygo, J., Oct 8 2019, Gymnastics Medicine: Evaluation, Management and Rehabilitation. Springer International Publishing, p. 55-73 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Influence of relative amplitude and presentation level on perception of the /p/ - /t/stop consonant contrast by normal and impaired listeners

Hedrick, M. S. & Jesteadt, W., Jan 1 2019, Modeling Sensorineural Hearing Loss. Taylor and Francis, p. 475-486 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

In situ AFM analysis investigating disassembly of DNA nanoparticles and nanofilms

Zou, Y., Wan, L., Blacklock, J., Xie, L., Carroll, S., Oupicky, D. & Mao, G., 2019, Methods in Molecular Biology. Humana Press Inc., p. 199-209 11 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter

Introduction

Neely, S. T., Jan 1 2019, Modeling Sensorineural Hearing Loss. Taylor and Francis, p. 6-8 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Introduction: Modeling sensorineural hearing loss

Jesteadt, W., Jan 1 2019, Modeling Sensorineural Hearing Loss. Taylor and Francis, p. 1-4 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Isolation and analysis of a genome-edited single-hepatocyte from a Cas9 transgenic mouse line

Sakurai, T., Kamiyoshi, A., Ohtsuka, M., Gurumurthy, C. B., Sato, M. & Shindo, T., 2019, Methods in Molecular Biology. Humana Press Inc., p. 257-271 15 p. (Methods in Molecular Biology; vol. 1874).

Research output: Chapter in Book/Report/Conference proceedingChapter

Management of Infection in Patients With Kidney Transplant

Cawcutt, K. A. & Zimmer, A., 2019, Critical Care Nephrology: Third Edition. Elsevier Inc., p. 552-560.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

Metabolomics analyses from tissues in parkinson’s disease

Bhinderwala, F., Lei, S., Woods, J., Rose, J., Marshall, D. D., Riekeberg, E., Leite, A. D. L., Morton, M., Dodds, E. D., Franco, R. & Powers, R., 2019, Methods in Molecular Biology. Humana Press Inc., p. 217-257 41 p. (Methods in Molecular Biology; vol. 1996).

Research output: Chapter in Book/Report/Conference proceedingChapter

Methods for determining the reduction potentials of flavin enzymes

Christgen, S. L., Becker, S. M. & Becker, D. F., 2019, Methods in Enzymology. Palfey, B. A. (ed.). Academic Press Inc., p. 1-25 25 p. (Methods in Enzymology; vol. 620).

Research output: Chapter in Book/Report/Conference proceedingChapter

Modeling hearing loss as an additional source of masking

Jesteadt, W., Neff, D. L., Humes, L. & Leek, M. R., Jan 1 2019, Modeling Sensorineural Hearing Loss. Taylor and Francis, p. 289-306 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular and physiological evaluation of pancreatic cancer-induced cachexia

Shukla, S. K., Dasgupta, A., Mulder, S. E. & Singh, P. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 321-333 13 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Mouse models of pancreatic cancer: An ever-emerging arm of cancer drug discovery

Ganguly, K., Batra, S. K. & Kaur, S., Apr 17 2019, Animal Models in Cancer Drug Discovery. Elsevier, p. 249-266 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Movere: Characterizing the role of emotion and motivation in shaping human behavior

Neta, M. & Haas, I. J., 2019, Nebraska Symposium on Motivation. Springer, p. 1-9 9 p. (Nebraska Symposium on Motivation; vol. 66).

Research output: Chapter in Book/Report/Conference proceedingChapter

NMR Metabolomics Protocols for Drug Discovery

Bhinderwala, F. & Powers, R., 2019, Methods in Molecular Biology. Humana Press Inc., p. 265-311 47 p. (Methods in Molecular Biology; vol. 2037).

Research output: Chapter in Book/Report/Conference proceedingChapter

Plasmodium falciparum in vitro drug resistance selections and gene editing

Ng, C. L. & Fidock, D. A., 2019, Methods in Molecular Biology. Humana Press Inc., p. 123-140 18 p. (Methods in Molecular Biology; vol. 2013).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Proximity Labeling of the Chlamydia trachomatis Inclusion Membrane

Olson, M. G., Jorgenson, L. M., Widner, R. E. & Rucks, E. A., 2019, Methods in Molecular Biology. Humana Press Inc., p. 245-278 34 p. (Methods in Molecular Biology; vol. 2042).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Regulating inflammatory cytokines in the diabetic heart

Yadav, S. K., Kambis, T. N. & Mishra, P. K., Jan 1 2019, Oxidative Stress in Heart Diseases. Springer Singapore, p. 427-436 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Relation between the rate of growth of loudness and the intensity DL

Neely, S. T. & Allen, J. B., Jan 1 2019, Modeling Sensorineural Hearing Loss. Taylor and Francis, p. 213-222 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Simulation of Masonry Arch Bridges Using 3D Discrete Element Modeling

Pulatsu, B., Erdogmus, E. & Lourenço, P. B., 2019, RILEM Bookseries. Springer Netherlands, p. 871-880 10 p. (RILEM Bookseries; vol. 18).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Synthesis of bioreducible polycations with controlled topologies

You, Y. Z., Yan, J. J., Yu, F., Yu, Z. Q. & Oupicky, D., 2019, Methods in Molecular Biology. Humana Press Inc., p. 27-38 12 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter