Bin Yu

  • 3548 Citations
  • 26 h-Index
20022019

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

  • 3548 Citations
  • 26 h-Index
  • 45 Article
  • 6 Review article
  • 2 Chapter
  • 1 Conference contribution
Filter
Article
2019

DSP1 and DSP4 act synergistically in small nuclear RNA 3’ end maturation and pollen growth

Pu, X., Meng, C., Wang, W., Yang, S., Chen, Y., Xie, Q., Yu, B. & Liu, Y., Aug 2019, In : Plant physiology. 180, 4, p. 2142-2151 10 p.

Research output: Contribution to journalArticle

Open Access

Mapping of transgenic alleles in soybean using a nanopore-based sequencing strategy

Li, S., Jia, S., Hou, L., Nguyen, H., Sato, S., Holding, D., Cahoon, E., Zhang, C., Clemente, T. & Yu, B., Aug 1 2019, In : Journal of experimental botany. 70, 15, p. 3825-3833 9 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Two distinct nucleic acid binding surfaces of Cdc5 regulate development

Wang, C., Li, M., Li, G., Liu, X., Zhao, W., Yu, B., Liu, J., Yang, J. & Peng, Y. L., Nov 15 2019, In : Biochemical Journal. 476, 21, p. 3355-3368 14 p.

Research output: Contribution to journalArticle

2018

DAWDLE interacts with DICER-LIKE proteins to mediate small RNA biogenesis

Zhang, S., Dou, Y., Li, S., Ren, G., Chevalier, D., Zhang, C. & Yu, B., Jun 2018, In : Plant physiology. 177, 3, p. 1142-1151 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3′ to 5′ exoribonuclease Atrimmer 2 in Arabidopsis

Wang, X., Wang, Y., Dou, Y., Chen, L., Wang, J., Jiang, N., Guo, C., Yao, Q., Wang, C., Liu, L., Yu, B., Zheng, B., Chekanova, J. A., Ma, J. & Ren, G., Jul 10 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 28, p. E6659-E6667

Research output: Contribution to journalArticle

6 Scopus citations

MAC3A and MAC3B, two core subunits of the MOS4-associated complex, positively influence miRNA biogenesis

Li, S., Liu, K., Zhou, B., Li, M., Zhang, S., Zeng, L., Zhang, C. & Yu, B., Feb 2018, In : Plant Cell. 30, 2, p. 481-494 14 p.

Research output: Contribution to journalArticle

12 Scopus citations

SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis

Li, S., Xu, R., Li, A., Liu, K., Gu, L., Li, M., Zhang, H., Zhang, Y., Zhuang, S., Wang, Q., Gao, G., Li, N., Zhang, C., Li, Y. & Yu, B., 2018, In : Nucleic acids research. 46, 17, p. 9148-9159 12 p.

Research output: Contribution to journalArticle

4 Scopus citations

SWI2/SNF2 ATPase CHR2 remodels pri-miRNAs via Serrate to impede miRNA production

Wang, Z., Ma, Z., Castillo-González, C., Sun, D., Li, Y., Yu, B., Zhao, B., Li, P. & Zhang, X., May 24 2018, In : Nature. 557, 7706, p. 516-521 6 p.

Research output: Contribution to journalArticle

20 Scopus citations
2017

Insect and plant-derived miRNAs in greenbug (Schizaphis graminum) and yellow sugarcane aphid (Sipha flava) revealed by deep sequencing

Wang, H., Zhang, C., Dou, Y., Yu, B., Liu, Y., Heng-Moss, T. M., Lu, G., Wachholtz, M., Bradshaw, J. D., Twigg, P., Scully, E., Palmer, N. & Sarath, G., Jan 30 2017, In : Gene. 599, p. 68-77 10 p.

Research output: Contribution to journalArticle

8 Scopus citations

MiRNA limits MAP kinase-mediated immunity: Optimization of plant fitness

Li, S. & Yu, B., Dec 16 2017, In : Journal of experimental botany. 68, 21-22, p. 5685-5687 3 p.

Research output: Contribution to journalArticle

1 Scopus citations

STV1, a ribosomal protein, binds primary microRNA transcripts to promote their interaction with the processing complex in Arabidopsis

Li, S., Liua, K., Zhang, S., Wang, X., Rogers, K., Ren, G., Zhang, C. & Yu, B., Feb 7 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 6, p. 1424-1429 6 p.

Research output: Contribution to journalArticle

7 Scopus citations

The arabidopsis MOS4-associated complex promotes microRNA biogenesis and precursor messenger RNA splicing

Jia, T., Zhang, B., You, C., Zhang, Y., Zeng, L., Li, S., Johnson, K. C. M., Yu, B., Li, X. & Chen, X., Oct 2017, In : Plant Cell. 29, 10, p. 2626-2643 18 p.

Research output: Contribution to journalArticle

16 Scopus citations

The functions of plant small RNAs in development and in stress responses

Li, S., Castillo-González, C., Yu, B. & Zhang, X., May 2017, In : Plant Journal. 90, 4, p. 654-670 17 p.

Research output: Contribution to journalArticle

61 Scopus citations
2016

PARylation of the forkhead-associated domain protein DAWDLE regulates plant immunity

Feng, B., Ma, S., Chen, S., Zhu, N., Zhang, S., Yu, B., Yu, Y., Le, B., Chen, X., Dinesh-Kumar, S. P., Shan, L. & He, P., Dec 1 2016, In : EMBO Reports. 17, 12, p. 1799-1813 15 p.

Research output: Contribution to journalArticle

12 Scopus citations

snRNA 3′ End Processing by a CPSF73-Containing Complex Essential for Development in Arabidopsis

Liu, Y., Li, S., Chen, Y., Kimberlin, A. N., Cahoon, E. B. & Yu, B., Oct 25 2016, In : PLoS biology. 14, 10, e1002571.

Research output: Contribution to journalArticle

5 Scopus citations
2015

Chlorophyll synthase under epigenetic surveillance is critical for vitamin E synthesis, and altered expression affects tocopherol levels in arabidopsis

Zhang, C., Zhang, W., Ren, G., Li, D., Cahoon, R. E., Chen, M., Zhou, Y., Yu, B. & Cahoon, E. B., Aug 1 2015, In : Plant physiology. 168, 4, p. 1503-1511 9 p.

Research output: Contribution to journalArticle

14 Scopus citations

Distinct and Cooperative Activities of HESO1 and URT1 Nucleotidyl Transferases in MicroRNA Turnover in Arabidopsis

Tu, B., Liu, L., Xu, C., Zhai, J., Li, S., Lopez, M. A., Zhao, Y., Yu, Y., Ramachandran, V., Ren, G., Yu, B., Li, S., Meyers, B. C., Mo, B. & Chen, X., Apr 1 2015, In : PLoS genetics. 11, 4, e1005119.

Research output: Contribution to journalArticle

50 Scopus citations

SiRNA-directed DNA methylation in plants

Xie, M. & Yu, B., Jan 1 2015, In : Current Genomics. 16, 1, p. 23-31 9 p.

Research output: Contribution to journalArticle

23 Scopus citations

Synergistic and Independent Actions of Multiple Terminal Nucleotidyl Transferases in the 3’ Tailing of Small RNAs in Arabidopsis

Wang, X., Zhang, S., Dou, Y., Zhang, C., Chen, X., Yu, B. & Ren, G., Apr 1 2015, In : PLoS genetics. 11, 4, e1005091.

Research output: Contribution to journalArticle

38 Scopus citations
2014

Identification of RNA silencing components in soybean and sorghum

Liu, X., Lu, T., Dou, Y., Yu, B. & Zhang, C., Jan 4 2014, In : BMC bioinformatics. 15, 1, 4.

Research output: Contribution to journalArticle

20 Scopus citations

Methylation protects microRNAs from an AGO1-associated activity that uridylates 5' RNA fragments generated by AGO1 cleavage

Ren, G., Xie, M., Zhang, S., Vinovskis, C., Chen, X. & Yu, B., Apr 29 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 17, p. 6365-6370 6 p.

Research output: Contribution to journalArticle

59 Scopus citations

PRL1, an RNA-Binding Protein, Positively Regulates the Accumulation of miRNAs and siRNAs in Arabidopsis

Zhang, S., Liu, Y. & Yu, B., Dec 1 2014, In : PLoS genetics. 10, 12

Research output: Contribution to journalArticle

28 Scopus citations
2013
55 Scopus citations

Plant microRNAs display differential 39 truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species

Zhai, J., Zhao, Y., Simon, S. A., Huang, S., Petsch, K., Arikit, S., Pillay, M., Ji, L., Xie, M., Cao, X., Yu, B., Timmermans, M., Yang, B., Chen, X. & Meyersa, B. C., Jul 2013, In : Plant Cell. 25, 7, p. 2417-2428 12 p.

Research output: Contribution to journalArticle

67 Scopus citations
2012

A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation

Xie, M., Ren, G., Costa-Nunes, P., Pontes, O. & Yu, B., May 2012, In : Nucleic acids research. 40, 10, p. 4422-4431 10 p.

Research output: Contribution to journalArticle

27 Scopus citations

Critical roles of RNA-binding proteins in miRNA biogenesis in Arabidopsis

Ren, G. & Yu, B., Dec 2012, In : RNA Biology. 9, 12, p. 1424-1428 5 p.

Research output: Contribution to journalArticle

15 Scopus citations

Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis

Ren, G., Xie, M., Dou, Y., Zhang, S., Zhang, C. & Yu, B., Jul 31 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 31, p. 12817-12821 5 p.

Research output: Contribution to journalArticle

114 Scopus citations

The chloroplast triggers developmental reprogramming when MutS HOMOLOG1 is suppressed in plants

Xu, Y. Z., de la Rosa Santamaria, R., Virdi, K. S., Arrieta-Montiel, M. P., Razvi, F., Li, S., Ren, G., Yu, B., Alexander, D., Guo, L., Feng, X., Dweikat, I. M., Clemente, T. E. & Mackenzie, S. A., Jun 2012, In : Plant physiology. 159, 2, p. 710-720 11 p.

Research output: Contribution to journalArticle

39 Scopus citations
17 Scopus citations

Uridylation of miRNAs by HEN1 SUPPRESSOR1 in arabidopsis

Ren, G., Chen, X. & Yu, B., Apr 24 2012, In : Current Biology. 22, 8, p. 695-700 6 p.

Research output: Contribution to journalArticle

108 Scopus citations
2010

Analysis of miRNA Modifications.

Yu, B. & Chen, X., 2010, In : Methods in molecular biology (Clifton, N.J.). 592, p. 137-148 12 p.

Research output: Contribution to journalArticle

12 Scopus citations

siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis

Yu, B., Bi, L., Zhai, J., Agarwal, M., Li, S., Wu, Q., Ding, S. W., Meyers, B. C., Vaucheret, H. & Chen, X., May 6 2010, In : Nucleic acids research. 38, 17, p. 5844-5850 7 p., gkq348.

Research output: Contribution to journalArticle

44 Scopus citations
2009

Computational prediction of novel non-coding RNAs in Arabidopsis thaliana

Song, D., Yang, Y., Yu, B., Zheng, B., Deng, Z., Lu, B. L., Chen, X. & Jiang, T., Jan 30 2009, In : BMC bioinformatics. 10, SUPPL. 1, S36.

Research output: Contribution to journalArticle

35 Scopus citations

Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis

Zheng, B., Wang, Z., Li, S., Yu, B., Liu, J. Y. & Chen, X., Dec 15 2009, In : Genes and Development. 23, 24, p. 2850-2860 11 p.

Research output: Contribution to journalArticle

184 Scopus citations
2008

The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis

Yu, B., Bi, L., Zheng, B., Ji, L., Chevalier, D., Agarwal, M., Ramachandran, V., Li, W., Lagrange, T., Walker, J. C. & Chen, X., Jul 22 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 29, p. 10073-10078 6 p.

Research output: Contribution to journalArticle

190 Scopus citations
2006

HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide

Yang, Z., Ebright, Y. W., Yu, B. & Chen, X., Feb 2006, In : Nucleic acids research. 34, 2, p. 667-675 9 p.

Research output: Contribution to journalArticle

274 Scopus citations

Phosphatidylglycerol biosynthesis in chloroplasts of Arabidopsis mutants deficient in acyl-ACP glycerol-3-phosphate acyltransferase

Xu, C., Yu, B., Cornish, A. J., Froehlich, J. E. & Benning, C., Jul 2006, In : Plant Journal. 47, 2, p. 296-309 14 p.

Research output: Contribution to journalArticle

68 Scopus citations

Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis

Yu, B., Chapman, E. J., Yang, Z., Carrington, J. C. & Chen, X., May 29 2006, In : FEBS Letters. 580, 13, p. 3117-3120 4 p.

Research output: Contribution to journalArticle

84 Scopus citations
2005

Methylation as a crucial step in plant microRNA biogenesis

Yu, B., Yang, Z., Li, J., Minakhina, S., Yang, M., Padgett, R. W., Steward, R. & Chen, X., Feb 11 2005, In : Science. 307, 5711, p. 932-935 4 p.

Research output: Contribution to journalArticle

652 Scopus citations

Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis

Li, J., Yang, Z., Yu, B., Liu, J. & Chen, X., Aug 23 2005, In : Current Biology. 15, 16, p. 1501-1507 7 p.

Research output: Contribution to journalArticle

496 Scopus citations
2004

EST-analysis of the thermo-acidophilic red microalga Galdieria sulphuraria reveals potential for lipid A biosynthesis and unveils the pathway of carbon export from rhodoplasts

Weber, A. P. M., Oesterhelt, C., Gross, W., Bräutigam, A., Imboden, L. A., Krassovskaya, I., Linka, N., Truchina, J., Schneidereit, J., Voll, H., Voll, L. M., Zimmermann, M., Jamai, A., Riekhof, W. R., Yu, B., Garavito, R. M. & Benning, C., May 2004, In : Plant Molecular Biology. 55, 1, p. 17-32 16 p.

Research output: Contribution to journalArticle

67 Scopus citations

Loss of plastidic lysophosphatidic acid acyltransferase causes embryo-lethality in Arabidopsis

Yu, B., Wakao, S., Fan, J. & Benning, C., May 2004, In : Plant and Cell Physiology. 45, 5, p. 503-510 8 p.

Research output: Contribution to journalArticle

70 Scopus citations
2003

Anionic lipids are required for chloroplast structure and function in Arabidopsis

Yu, B. & Banning, C., Dec 2003, In : Plant Journal. 36, 6, p. 762-770 9 p.

Research output: Contribution to journalArticle

91 Scopus citations
2002
208 Scopus citations

The pgp1 mutant locus of Arabidopsis encodes a phosphatidylglycerolphosphate synthase with impaired activity

Xu, C., Härtel, H., Wada, H., Hagio, M., Yu, B., Eakin, C. & Benning, C., 2002, In : Plant physiology. 129, 2, p. 594-604 11 p.

Research output: Contribution to journalArticle

83 Scopus citations