• 2980 Citations
  • 24 h-Index
19972020

Research output per year

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Research Output

2020

Changes in the community structure of the symbiotic microbes of wild amphibians from the eastern edge of the Tibetan Plateau

Xu, L. L., Chen, H., Zhang, M., Zhu, W., Chang, Q., Lu, G., Chen, Y., Jiang, J. & Zhu, L., Apr 1 2020, In : MicrobiologyOpen. 9, 4, e1004.

Research output: Contribution to journalArticle

Open Access

Evolution and genetics of bighead and silver carps: Native population conservation versus invasive species control

Lu, G., Wang, C., Zhao, J., Liao, X., Wang, J., Luo, M., Zhu, L., Bernatzhez, L. & Li, S., Jan 1 2020, (Accepted/In press) In : Evolutionary Applications.

Research output: Contribution to journalReview article

Open Access

Lessons from bamboo-eating pandas and their gut microbiome: Gut microbiome flow and applications

Zhang, Z., Hu, T., Lu, G. & Zhu, L., Apr 1 2020, In : Evolutionary Applications. 13, 4, p. 615-619 5 p.

Research output: Contribution to journalArticle

Open Access

Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin

Wang, J., Gaughan, S., Lamer, J. T., Deng, C., Hu, W., Wachholtz, M., Qin, S., Nie, H., Liao, X., Ling, Q., Li, W., Zhu, L., Bernatchez, L., Wang, C. & Lu, G., Feb 1 2020, In : Evolutionary Applications. 13, 2, p. 263-277 15 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

The Changes in the Frog Gut Microbiome and Its Putative Oxygen-Related Phenotypes Accompanying the Development of Gastrointestinal Complexity and Dietary Shift

Zhang, M., Chen, H., Liu, L., Xu, L., Wang, X., Chang, L., Chang, Q., Lu, G., Jiang, J. & Zhu, L., Mar 3 2020, In : Frontiers in Microbiology. 11, 162.

Research output: Contribution to journalArticle

Open Access
2019

Age-related changes in the gut microbiota of the Chinese giant salamander (Andrias davidianus)

Zhang, M., Gaughan, S., Chang, Q., Chen, H., Lu, G., Wang, X., Xu, L., Zhu, L. & Jiang, J., Jul 2019, In : MicrobiologyOpen. 8, 7, e00778.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Are the gut microbial systems of giant pandas unstable?

Yao, R., Yang, Z., Zhang, Z., Hu, T., Chen, H., Huang, F., Gu, X., Yang, X., Lu, G. & Zhu, L., Sep 2019, In : Heliyon. 5, 9, e02480.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Comparative skin transcriptome of two Oujiang color common carp (Cyprinus carpio var. color) varieties

Du, J., Chen, X., Wang, J., Chen, H., Yue, W., Lu, G. & Wang, C., Feb 15 2019, In : Fish Physiology and Biochemistry. 45, 1, p. 177-185 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Differential gene expression in chronic wasting disease-positive white-tailed deer (Odocoileus virginianus)

Trone-Launer, E. K., Wang, J., Lu, G., Mateus-Pinilla, N. E., Zick, P. R., Lamer, J. T., Shelton, P. A. & Jacques, C. N., Nov 1 2019, In : Ecology and Evolution. 9, 22, p. 12600-12612 13 p.

Research output: Contribution to journalArticle

Open Access
Open Access
1 Scopus citations

Habitat use and population structure of the shoal chub (Macrhybopsis hyostoma) in the upper Mississippi River basin

Gaughan, S., Steffensen, K. & Lu, G., Jun 15 2019, In : Environmental Biology of Fishes. 102, 6, p. 901-914 14 p.

Research output: Contribution to journalArticle

2018

Adaptive evolution to a high purine and fat diet of carnivorans revealed by gut microbiomes and host genomes

Zhu, L., Wu, Q., Deng, C., Zhang, M., Zhang, C., Chen, H., Lu, G. & Wei, F., May 2018, In : Environmental microbiology. 20, 5, p. 1711-1722 12 p.

Research output: Contribution to journalArticle

6 Scopus citations

Endangered Père David’s deer genome provides insights into population recovering

Zhu, L., Deng, C., Zhao, X., Ding, J., Huang, H., Zhu, S., Wang, Z., Qin, S., Ding, Y., Lu, G. & Yang, Z., Dec 2018, In : Evolutionary Applications. 11, 10, p. 2040-2053 14 p.

Research output: Contribution to journalArticle

4 Scopus citations
2017

An integrated and comprehensive transcriptome reveals immune-related genes and signal pathways in topmouth culter (Culter alburnus)

Lei, S., Chen, X., Wang, J., Zhou, L., Zhang, Y., Zhang, G., Lu, G. & Wang, C., May 1 2017, In : Aquaculture Research. 48, 5, p. 2231-2242 12 p.

Research output: Contribution to journalArticle

2 Scopus citations

A systems biology approach for modeling microbiomes using split graphs

Kim, S., Thapa, I., Lu, G., Zhu, L. & Ali, H. H., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2062-2068 7 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Complete genome sequences of Pseudomonas fluorescens bacteriophages isolated from freshwater samples in Omaha, Nebraska

Lu, G., Luhr, J., Stoecklein, A., Warner, P. & Tapprich, W., Jan 1 2017, In : Genome Announcements. 5, 12, e01501-16.

Research output: Contribution to journalArticle

4 Scopus citations

Evolutionary relationship of three mitten crabs (Eriocheir sp)revealed by mitogenome and 5S ribosomal DNA analysis

Chen, X., Wang, J., Huang, L., Yue, W., Zou, J., Yuan, C., Lu, G. & Wang, C., Nov 2017, In : Aquaculture and Fisheries. 2, 6, p. 256-261 6 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Insect and plant-derived miRNAs in greenbug (Schizaphis graminum) and yellow sugarcane aphid (Sipha flava) revealed by deep sequencing

Wang, H., Zhang, C., Dou, Y., Yu, B., Liu, Y., Heng-Moss, T. M., Lu, G., Wachholtz, M., Bradshaw, J. D., Twigg, P., Scully, E., Palmer, N. & Sarath, G., Jan 30 2017, In : Gene. 599, p. 68-77 10 p.

Research output: Contribution to journalArticle

7 Scopus citations

Selection of appropriate reference genes for qPCR in the Chinese mitten crab, Eriocheir sinensis (Decapoda, Varunidae)

Huang, S., Chen, X., Wang, J., Chen, J., Yue, W., Lu, W., Lu, G. & Wang, C., Jan 1 2017, In : Crustaceana. 90, 3, p. 275-296 22 p.

Research output: Contribution to journalArticle

7 Scopus citations
2016

Characterization of pikeperch (Sander lucioperca) transcriptome and development of SSR markers

Han, X., Ling, Q., Li, C., Wang, G., Xu, Z. & Lu, G., Jun 1 2016, In : Biochemical Systematics and Ecology. 66, p. 188-195 8 p.

Research output: Contribution to journalArticle

9 Scopus citations

Complete mitochondrial genomes of three mitten crabs, Eriocheir sinensis, E. Hepuensis, and E. Japonica

Wang, J., Huang, L., Cheng, Q., Lu, G. & Wang, C. H., Jan 1 2016, In : Mitochondrial DNA. 27, 2, p. 1175-1176 2 p.

Research output: Contribution to journalArticle

8 Scopus citations

Model-based clustering with certainty estimation: Implication for clade assignment of influenza viruses

Zhang, S., Li, Z., Beland, K. & Lu, G., Jul 21 2016, In : BMC bioinformatics. 17, 1, 287.

Research output: Contribution to journalArticle

1 Scopus citations

The complete mitochondrial genome of the shoal chub, Macrhybopsis hyostoma

Gaughan, S., Johnson, R., Wang, J., Wachholtz, M., Steffensen, K., King, T. & Lu, G., Jan 1 2016, In : Mitochondrial DNA Part B: Resources. 1, 1, p. 911-912 2 p.

Research output: Contribution to journalArticle

The complete mitochondrial genome of the silver chub, Macrhybopsis storeriana

Gaughan, S., Johnson, R., Wang, J., Wachholtz, M., Steffensen, K., King, T. & Lu, G., Jan 1 2016, In : Mitochondrial DNA Part B: Resources. 1, 1, p. 789-790 2 p.

Research output: Contribution to journalArticle

Transcriptomic comparison of invasive bigheaded carps (Hypophthalmichthys nobilis and Hypophthalmichthys molitrix) and their hybrids

Wang, J., Lamer, J. T., Gaughan, S., Wachholtz, M., Wang, C. & Lu, G., Dec 1 2016, In : Ecology and Evolution. 6, 23, p. 8452-8459 8 p.

Research output: Contribution to journalArticle

4 Scopus citations
2015

Genetic diversity in oxytocin ligands and receptors in New World monkeys

Ren, D., Lu, G., Moriyama, H., Mustoe, A. C., Harrison, E. B. & French, J. A., May 4 2015, In : PloS one. 10, 5, e0125775.

Research output: Contribution to journalArticle

33 Scopus citations

Transcriptomic variation of hepatopancreas reveals the energy metabolism and biological processes associated with molting in Chinese mitten crab, Eriocheir sinensis

Huang, S., Wang, J., Yue, W., Chen, J., Gaughan, S., Lu, W., Lu, G. & Wang, C., Sep 15 2015, In : Scientific reports. 5, 14015.

Research output: Contribution to journalArticle

41 Scopus citations
2014

Analysis of the skin transcriptome in two Oujiang color varieties of common carp

Wang, C., Wachholtz, M., Wang, J., Liao, X. & Lu, G., Mar 6 2014, In : PloS one. 9, 3, e90074.

Research output: Contribution to journalArticle

24 Scopus citations

Molecular phylogeny and evolutionary dynamics of influenza A nonstructural (NS) gene

Xu, J., Zhong, H. A., Madrahimov, A., Helikar, T. & Lu, G., Mar 1 2014, In : Infection, Genetics and Evolution. 22, p. 192-200 9 p.

Research output: Contribution to journalArticle

9 Scopus citations
2013

Dynamics of Influenza Virus and Human Host Interactions During Infection and Replication Cycle

Madrahimov, A., Helikar, T., Kowal, B., Lu, G. & Rogers, J., Jun 1 2013, In : Bulletin of Mathematical Biology. 75, 6, p. 988-1011 24 p.

Research output: Contribution to journalArticle

15 Scopus citations

The Tree of Life and a New Classification of Bony Fishes

Betancur-R, R., Broughton, R. E., Wiley, E. O., Carpenter, K., López, J. A., Li, C., Holcroft, N. I., Arcila, D., Sanciangco, M., Cureton, J. C., Zhang, F., Buser, T., Campbell, M. A., Ballesteros, J. A., Roa-Varon, A., Willis, S., Borden, W. C., Rowley, T., Reneau, P. C., Hough, D. J. & 4 others, Lu, G., Grande, T., Arratia, G. & Ortí, G., Apr 29 2013, In : PLoS Currents. APR 2013, ecurrents.tol.53ba26640df0ccaee75bb165c8c26288.

Research output: Contribution to journalArticle

459 Scopus citations

Transcriptome Analysis of Crucian Carp (Carassius auratus), an Important Aquaculture and Hypoxia-Tolerant Species

Liao, X., Cheng, L., Xu, P., Lu, G., Wachholtz, M., Sun, X. & Chen, S., Apr 22 2013, In : PloS one. 8, 4, e62308.

Research output: Contribution to journalArticle

57 Scopus citations

Transcriptome analysis of two buffalograss cultivars

Wachholtz, M., Heng-Moss, T., Twigg, P., Baird, L., Lu, G. & Amundsen, K., Sep 11 2013, In : BMC genomics. 14, 1, 613.

Research output: Contribution to journalArticle

11 Scopus citations
2012

Complete mitogenome sequence of black carp (Mylopharyngodon piceus) and its use for molecular phylogeny of leuciscine fishes

Chenghui, W., Wang, J., Yang, J., Lu, G., Song, X., Chen, Q., Xu, J., Yang, Q. & Li, S., May 1 2012, In : Molecular Biology Reports. 39, 5, p. 6337-6342 6 p.

Research output: Contribution to journalArticle

11 Scopus citations
3 Scopus citations

Evolutionary history and phylodynamics of influenza A and B neuraminidase (NA) genes inferred from large-scale sequence analyses

Xu, J., Davis, C. T., Christman, M. C., Rivailler, P., Zhong, H., Donis, R. O. & Lu, G., Jul 11 2012, In : PloS one. 7, 7, e38665.

Research output: Contribution to journalArticle

24 Scopus citations

Microsatellite genetic diversity and differentiation of native and introduced grass carp populations in three continents

Chen, Q., Wang, C., Lu, G., Zhao, J., Chapman, D. C., Zsigmond, J. & Li, S., Jun 1 2012, In : Genetica. 140, 4-6, p. 115-123 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

PhyloMarker–-A Tool for Mining Phylogenetic Markers through Genome Comparison: Application of the Mouse Lemur (Genus Microcebus) Phylogeny

Lei, R., Rowley, T. W., Zhu, L., Bailey, C. A., Engberg, S. E., Wood, M. L., Christman, M. C., Perry, G. H., Louis, E. E. & Lu, G., Jan 1 2012, In : Evolutionary Bioinformatics. 8

Research output: Contribution to journalReview article

Open Access
6 Scopus citations
2011

Evolutionary dynamics of influenza A nucleoprotein (NP) lineages revealed by large-scale sequence analyses

Xu, J., Christman, M. C., Donis, R. O. & Lu, G., Dec 1 2011, In : Infection, Genetics and Evolution. 11, 8, p. 2125-2132 8 p.

Research output: Contribution to journalArticle

15 Scopus citations

Evolution of influenza viral neuraminidase (NA) revealed by large-scale sequence analysis.

Xu, J. & Lu, G., May 1 2011, In : Influenza and other respiratory viruses. 5 Suppl 1, p. 405-408 4 p.

Research output: Contribution to journalArticle

2 Scopus citations

Large-scale sequence analysis of influenza A hemagglutinin (HA): insights into a unified system for lineage assignment.

Rickert, J., Xu, J., Christman, M. & Lu, G., May 1 2011, In : Influenza and other respiratory viruses. 5 Suppl 1, p. 410-413 4 p.

Research output: Contribution to journalArticle

Pandemic (H1N1) 2009 virus revisited: An evolutionary retrospective

Christman, M. C., Kedwaii, A., Xu, J., Donis, R. O. & Lu, G., Jul 1 2011, In : Infection, Genetics and Evolution. 11, 5, p. 803-811 9 p.

Research output: Contribution to journalReview article

43 Scopus citations

Population genetic structure and evolutionary history of grass carp Ctenopharyngodon idella in the Yangtze River, China

Zhao, J., Cao, Y., Li, S., Li, J., Deng, Y. & Lu, G., Jan 1 2011, In : Environmental Biology of Fishes. 90, 1, p. 85-93 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Significant genetic differentiation between native and introduced silver carp (Hypophthalmichthys molitrix) inferred from mtDNA analysis

Li, S. F., Xu, J. W., Yang, Q. L., Wang, C. H., Chapman, D. C. & Lu, G., Dec 1 2011, In : Environmental Biology of Fishes. 92, 4, p. 503-511 9 p.

Research output: Contribution to journalArticle

6 Scopus citations
2010

Applying neural networks to classify influenza virus antigenic types and hosts

Attaluri, P. K., Chen, Z. & Lu, G., Aug 20 2010, 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010. p. 279-284 6 p. 5510726. (2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Cloning, characterization and expression of the pepsinogen C from the golden mandarin fish Siniperca scherzeri (Teleostei: Perciformes)

Deng, Y., Zhao, J., Lu, G., Wu, X. & Tao, Y., Aug 3 2010, In : Fisheries Science. 76, 5, p. 819-826 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

Genetic diversity and variation of mitochondrial DNA in native and introduced bighead carp

Li, S. F., Yang, Q. L., Xu, JIA. WEI., Wang, C. H., Chapman, D. C. & Lu, G., Dec 1 2010, In : Transactions of the American Fisheries Society. 139, 4, p. 937-946 10 p.

Research output: Contribution to journalArticle

9 Scopus citations

On the origin of species: Insights from the ecological genomics of lake whitefish

Bernatchez, L., Renaut, S., Whiteley, A. R., Derome, N., Jeukens, J., Landry, L., Lu, G., Nolte, A. W., Østbye, K., Rogers, S. M. & St-Cyr, J., Jun 12 2010, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 365, 1547, p. 1783-1800 18 p.

Research output: Contribution to journalArticle

170 Scopus citations

Sequence comparison using multi-order Markov chains

Fang, X., Lu, G. & Zhang, S., Sep 6 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010. 5515258. (2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2009

7TMRmine: A Web server for hierarchical mining of 7TMR proteins

Lu, G., Wang, Z., Jones, A. M. & Moriyama, E. N., Jun 19 2009, In : BMC genomics. 10, 275.

Research output: Contribution to journalArticle

12 Scopus citations