• 3020 Citations
  • 24 h-Index
19972020

Research output per year

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Research Output

Insect and plant-derived miRNAs in greenbug (Schizaphis graminum) and yellow sugarcane aphid (Sipha flava) revealed by deep sequencing

Wang, H., Zhang, C., Dou, Y., Yu, B., Liu, Y., Heng-Moss, T. M., Lu, G., Wachholtz, M., Bradshaw, J. D., Twigg, P., Scully, E., Palmer, N. & Sarath, G., Jan 30 2017, In : Gene. 599, p. 68-77 10 p.

Research output: Contribution to journalArticle

9 Scopus citations

Integrating decision tree and hidden markov model (hmm) for subtype prediction of human influenza a virus

Attaluri, P. K., Chen, Z., Weerakoon, A. M. & Lu, G., 2009, Cutting-Edge Research Topics on Multiple Criteria Decision Making: 20th International Conference, MCDM 2009, Chengdu/Jiuzhaigou, Proceedings. p. 52-58 7 p. (Communications in Computer and Information Science; vol. 35).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Integrating molecular genetics and ecology in studies of adaptive radiation: Whitefish, Coregonus sp., as a case study

Bernatchez, L., Chouinard, A. & Lu, G., 1999, In : Biological Journal of the Linnean Society. 68, 1-2, p. 173-194 22 p.

Research output: Contribution to journalArticle

124 Scopus citations

Large-scale sequence analysis of influenza A hemagglutinin (HA): insights into a unified system for lineage assignment.

Rickert, J., Xu, J., Christman, M. & Lu, G., May 2011, In : Influenza and other respiratory viruses. 5 Suppl 1, p. 410-413 4 p.

Research output: Contribution to journalArticle

Lessons from bamboo-eating pandas and their gut microbiome: Gut microbiome flow and applications

Zhang, Z., Hu, T., Lu, G. & Zhu, L., Apr 1 2020, In : Evolutionary Applications. 13, 4, p. 615-619 5 p.

Research output: Contribution to journalArticle

Open Access

Microsatellite genetic diversity and differentiation of native and introduced grass carp populations in three continents

Chen, Q., Wang, C., Lu, G., Zhao, J., Chapman, D. C., Zsigmond, J. & Li, S., Jun 2012, In : Genetica. 140, 4-6, p. 115-123 9 p.

Research output: Contribution to journalArticle

10 Scopus citations
29 Scopus citations

Model-based clustering with certainty estimation: Implication for clade assignment of influenza viruses

Zhang, S., Li, Z., Beland, K. & Lu, G., Jul 21 2016, In : BMC bioinformatics. 17, 1, 287.

Research output: Contribution to journalArticle

1 Scopus citations

Modeling miRNA data

Lopez, S., Lu, G. & Chen, Z., 2007, Proceedings of the 2007 ACM Symposium on Applied Computing. Association for Computing Machinery, p. 158-162 5 p. (Proceedings of the ACM Symposium on Applied Computing).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Molecular phylogeny and evolutionary dynamics of influenza A nonstructural (NS) gene

Xu, J., Zhong, H. A., Madrahimov, A., Helikar, T. & Lu, G., Mar 2014, In : Infection, Genetics and Evolution. 22, p. 192-200 9 p.

Research output: Contribution to journalArticle

9 Scopus citations

On the origin of species: Insights from the ecological genomics of lake whitefish

Bernatchez, L., Renaut, S., Whiteley, A. R., Derome, N., Jeukens, J., Landry, L., Lu, G., Nolte, A. W., Østbye, K., Rogers, S. M. & St-Cyr, J., Jun 12 2010, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 365, 1547, p. 1783-1800 18 p.

Research output: Contribution to journalArticle

170 Scopus citations

Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci

Li, C., Lu, G. & Ortí, G., Aug 2008, In : Systematic Biology. 57, 4, p. 519-539 21 p.

Research output: Contribution to journalArticle

160 Scopus citations

Pandemic (H1N1) 2009 virus revisited: An evolutionary retrospective

Christman, M. C., Kedwaii, A., Xu, J., Donis, R. O. & Lu, G., Jul 2011, In : Infection, Genetics and Evolution. 11, 5, p. 803-811 9 p.

Research output: Contribution to journalReview article

45 Scopus citations
22 Scopus citations

PhyloMarker–-A Tool for Mining Phylogenetic Markers through Genome Comparison: Application of the Mouse Lemur (Genus Microcebus) Phylogeny

Lei, R., Rowley, T. W., Zhu, L., Bailey, C. A., Engberg, S. E., Wood, M. L., Christman, M. C., Perry, G. H., Louis, E. E. & Lu, G., Jan 1 2012, In : Evolutionary Bioinformatics. 8

Research output: Contribution to journalReview article

Open Access
7 Scopus citations

Population genetic structure and evolutionary history of grass carp Ctenopharyngodon idella in the Yangtze River, China

Zhao, J., Cao, Y., Li, S., Li, J., Deng, Y. & Lu, G., Jan 2011, In : Environmental Biology of Fishes. 90, 1, p. 85-93 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin

Wang, J., Gaughan, S., Lamer, J. T., Deng, C., Hu, W., Wachholtz, M., Qin, S., Nie, H., Liao, X., Ling, Q., Li, W., Zhu, L., Bernatchez, L., Wang, C. & Lu, G., Feb 1 2020, In : Evolutionary Applications. 13, 2, p. 263-277 15 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Selection of appropriate reference genes for qPCR in the Chinese mitten crab, Eriocheir sinensis (Decapoda, Varunidae)

Huang, S., Chen, X., Wang, J., Chen, J., Yue, W., Lu, W., Lu, G. & Wang, C., 2017, In : Crustaceana. 90, 3, p. 275-296 22 p.

Research output: Contribution to journalArticle

8 Scopus citations

Sequence comparison using multi-order Markov chains

Fang, X., Lu, G. & Zhang, S., 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010. 5515258. (2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Significant genetic differentiation between native and introduced silver carp (Hypophthalmichthys molitrix) inferred from mtDNA analysis

Li, S. F., Xu, J. W., Yang, Q. L., Wang, C. H., Chapman, D. C. & Lu, G., Dec 2011, In : Environmental Biology of Fishes. 92, 4, p. 503-511 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

The Arabidopsis chromatin modifier ATX1, the myotubularin-like AtMTM and the response to drought.

Ding, Y., Lapko, H., Ndamukong, I., Xia, Y., Al-Abdallat, A., Lalithambika, S., Sadder, M., Saleh, A., Fromm, M., Riethoven, J. J., Lu, G. & Avramova, Z., Nov 2009, In : Plant signaling & behavior. 4, 11, p. 1049-1058 10 p.

Research output: Contribution to journalArticle

Open Access
33 Scopus citations

The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes

Alvarez-Venegas, R., Sadder, M., Hlavacka, A., Baluška, F., Xia, Y., Lu, G., Firsov, A., Sarath, G., Moriyama, H., Dubrovsky, J. G. & Avramova, Z., Apr 11 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 15, p. 6049-6054 6 p.

Research output: Contribution to journalArticle

109 Scopus citations

The Changes in the Frog Gut Microbiome and Its Putative Oxygen-Related Phenotypes Accompanying the Development of Gastrointestinal Complexity and Dietary Shift

Zhang, M., Chen, H., Liu, L., Xu, L., Wang, X., Chang, L., Chang, Q., Lu, G., Jiang, J. & Zhu, L., Mar 3 2020, In : Frontiers in Microbiology. 11, 162.

Research output: Contribution to journalArticle

Open Access

The complete mitochondrial genome of the shoal chub, Macrhybopsis hyostoma

Gaughan, S., Johnson, R., Wang, J., Wachholtz, M., Steffensen, K., King, T. & Lu, G., 2016, In : Mitochondrial DNA Part B: Resources. 1, 1, p. 911-912 2 p.

Research output: Contribution to journalArticle

The complete mitochondrial genome of the silver chub, Macrhybopsis storeriana

Gaughan, S., Johnson, R., Wang, J., Wachholtz, M., Steffensen, K., King, T. & Lu, G., 2016, In : Mitochondrial DNA Part B: Resources. 1, 1, p. 789-790 2 p.

Research output: Contribution to journalArticle

The Hera database and its use in the characterization of endoplasmic reticulum proteins

Scott, M., Lu, G., Hallett, M. & Thomas, D. Y., Apr 12 2004, In : Bioinformatics. 20, 6, p. 937-944 8 p.

Research output: Contribution to journalArticle

28 Scopus citations

The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions

Saleh, A., Alvarez-Venegas, R., Yilmaz, M., Oahn-Le, Hou, G., Sadder, M., Al-Abdallat, A., Xia, Y., Lu, G., Ladunga, I. & Avramovaa, Z., Mar 2008, In : Plant Cell. 20, 3, p. 568-579 12 p.

Research output: Contribution to journalArticle

129 Scopus citations

The Tree of Life and a New Classification of Bony Fishes

Betancur-R, R., Broughton, R. E., Wiley, E. O., Carpenter, K., López, J. A., Li, C., Holcroft, N. I., Arcila, D., Sanciangco, M., Cureton, J. C., Zhang, F., Buser, T., Campbell, M. A., Ballesteros, J. A., Roa-Varon, A., Willis, S., Borden, W. C., Rowley, T., Reneau, P. C., Hough, D. J. & 4 others, Lu, G., Grande, T., Arratia, G. & Ortí, G., 2013, In : PLoS Currents. APR 2013, ecurrents.tol.53ba26640df0ccaee75bb165c8c26288.

Research output: Contribution to journalArticle

466 Scopus citations

Transcriptome Analysis of Crucian Carp (Carassius auratus), an Important Aquaculture and Hypoxia-Tolerant Species

Liao, X., Cheng, L., Xu, P., Lu, G., Wachholtz, M., Sun, X. & Chen, S., Apr 22 2013, In : PloS one. 8, 4, e62308.

Research output: Contribution to journalArticle

59 Scopus citations

Transcriptome analysis of two buffalograss cultivars

Wachholtz, M., Heng-Moss, T., Twigg, P., Baird, L., Lu, G. & Amundsen, K., Sep 11 2013, In : BMC genomics. 14, 1, 613.

Research output: Contribution to journalArticle

11 Scopus citations

Transcriptomic comparison of invasive bigheaded carps (Hypophthalmichthys nobilis and Hypophthalmichthys molitrix) and their hybrids

Wang, J., Lamer, J. T., Gaughan, S., Wachholtz, M., Wang, C. & Lu, G., Dec 1 2016, In : Ecology and Evolution. 6, 23, p. 8452-8459 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

Transcriptomic variation of hepatopancreas reveals the energy metabolism and biological processes associated with molting in Chinese mitten crab, Eriocheir sinensis

Huang, S., Wang, J., Yue, W., Chen, J., Gaughan, S., Lu, W., Lu, G. & Wang, C., Sep 15 2015, In : Scientific reports. 5, 14015.

Research output: Contribution to journalArticle

42 Scopus citations

Vector NTI, a balanced all-in-one sequence analysis suite.

Lu, G. & Moriyama, E. N., Dec 2004, In : Briefings in bioinformatics. 5, 4, p. 378-388 11 p.

Research output: Contribution to journalArticle

Open Access
219 Scopus citations