• 1179 Citations
  • 15 h-Index
1990 …2020

Research output per year

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Research Output

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Article
2020

A bag-of-words feature engineering approach for assessing health conditions using accelerometer data

Rastegari, E. & Ali, H., May 2020, In : Smart Health. 16, 100116.

Research output: Contribution to journalArticle

2019

A novel graph theoretical approach for modeling microbiomes and inferring microbial ecological relationships

Kim, S., Thapa, I., Zhang, L. & Ali, H., Dec 20 2019, In : BMC genomics. 20, 945.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
Open Access
1 Scopus citations
Open Access
2018

Heterogeneity of Ly6G+ Ly6C+ myeloid-derived suppressor cell infiltrates during Staphylococcus aureus biofilm infection

Heim, C. E., West, S. C., Ali, H. & Kielian, T., Dec 1 2018, In : Infection and immunity. 86, 12, e00684.

Research output: Contribution to journalArticle

8 Scopus citations
2016

Graph mining for next generation sequencing: Leveraging the assembly graph for biological insights

Warnke-Sommer, J. & Ali, H., May 6 2016, In : BMC genomics. 17, 1, 340.

Research output: Contribution to journalArticle

2 Scopus citations
2014

Identifying aging-related genes in mouse hippocampus using gateway nodes

Dempsey, K. M. & Ali, H. H., May 27 2014, In : BMC systems biology. 8, 1, 62.

Research output: Contribution to journalArticle

10 Scopus citations
2 Scopus citations
2013

A base composition analysis of natural patterns for the preprocessing of metagenome sequences.

Bonham-Carter, O., Ali, H. & Bastola, D., 2013, In : BMC bioinformatics. 14 Suppl 11, p. S5 S5.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
Open Access
1 Scopus citations
3 Scopus citations
2012

CD4+ regulatory and effector/memory T cell subsets profile motor dysfunction in Parkinson's disease

Saunders, J. A. H., Estes, K. A., Kosloski, L. M., Allen, H. E., Dempsey, K. M., Torres-Russotto, D. R., Meza, J. L., Santamaria, P. M., Bertoni, J. M., Murman, D. L., Ali, H. H., Standaert, D. G., Mosley, R. L. & Gendelman, H. E., Dec 2012, In : Journal of Neuroimmune Pharmacology. 7, 4, p. 927-938 12 p.

Research output: Contribution to journalArticle

114 Scopus citations
6 Scopus citations
2011
4 Scopus citations
2010
2 Scopus citations
3 Scopus citations
2009

Genomic analyses reveal global functional alterations that promote tumor growth and novel tumor suppressor genes in natural killer-cell malignancies

Iqbal, J., Kucuk, C., deLeeuw, R. J., Srivastava, G., Tam, W., Geng, H., Klinkebiel, D., Christman, J. K., Patel, K., Cao, K., Shen, L., Dybkaer, K., Tsui, I. F. L., Ali, H., Shimizu, N., Au, W. Y., Lam, W. L. & Chan, W. C., 2009, In : Leukemia. 23, 6, p. 1139-1151 13 p.

Research output: Contribution to journalArticle

125 Scopus citations
2008
2 Scopus citations
9 Scopus citations

MTAP: The motif tool assessment platform

Quest, D., Dempsey, K., Shafiullah, M., Bastola, D. & Ali, H., Aug 12 2008, In : BMC bioinformatics. 9, SUPPL. 9, S6.

Research output: Contribution to journalArticle

7 Scopus citations
2007
1 Scopus citations

Cross-platform analysis of cancer biomarkers: A Bayesian network approach to incorporating mass spectrometry and microarray data

Deng, X., Geng, H. & Ali, H. H., 2007, In : Cancer Informatics. 3, p. 183-202 20 p.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations

High sensitivity RNA pseudoknot prediction

Huang, X. & Ali, H., Jan 2007, In : Nucleic acids research. 35, 2, p. 656-663 8 p.

Research output: Contribution to journalArticle

28 Scopus citations
33 Scopus citations
2006

A coarse-grain analysis for the performance of measurement-based admission control algorithms

Abdelaal, A. M., Ali, H. H. & Sharif, H., 2006, In : Journal of Computational Methods in Sciences and Engineering. 6, 5-6, p. S349-S358

Research output: Contribution to journalArticle

Joint learning of gene functions - A Bayesian network model approach

Deng, X., Geng, H. & Ali, H. H., Apr 2006, In : Journal of Bioinformatics and Computational Biology. 4, 2, p. 217-239 23 p.

Research output: Contribution to journalArticle

3 Scopus citations

Link test-A statistical method for finding prostate cancer biomarkers

Deng, X., Geng, H., Bastola, D. R. & Ali, H. H., Dec 2006, In : Computational Biology and Chemistry. 30, 6, p. 425-433 9 p.

Research output: Contribution to journalArticle

20 Scopus citations
2005

A method of precise mRNA/DNA homology-based gene structure prediction

Churbanov, A., Pauley, M., Quest, D. & Ali, H., Oct 21 2005, In : BMC bioinformatics. 6, 261.

Research output: Contribution to journalArticle

6 Scopus citations
1 Scopus citations
22 Scopus citations

Evolutionary conservation suggests a regulatory function of AUG triplets in 5′-UTRs of eukaryotic genes

Churbanov, A., Rogozin, I. B., Babenko, V. N., Ali, H. & Koonin, E. V., 2005, In : Nucleic acids research. 33, 17, p. 5512-5520 9 p.

Research output: Contribution to journalArticle

80 Scopus citations

EXAMINE: A computational approach to reconstructing gene regulatory networks

Deng, X., Geng, H. & Ali, H., Aug 2005, In : BioSystems. 81, 2, p. 125-136 12 p.

Research output: Contribution to journalArticle

19 Scopus citations
2003
1998

New approach for task scheduling in distributed systems

Ali, H. H. & Vemulapalli, R., 1998, In : International Journal of Parallel and Distributed Systems and Networks. 1, 2, p. 101-107 7 p.

Research output: Contribution to journalArticle

1 Scopus citations
1995

An Optimal algorithm for scheduling interval ordered tasks with communication on N processors

Ali, H. H. & El-Rewini, H., Oct 1995, In : Journal of Computer and System Sciences. 51, 2, p. 301-306 6 p.

Research output: Contribution to journalArticle

11 Scopus citations

On optimal loop unrolling in two-processor scheduling

El-Rewini, H. & Ali, H. H., Jan 1 1995, In : Parallel Algorithms and Applications. 7, 1-2, p. 107-119 13 p.

Research output: Contribution to journalArticle

Static scheduling of conditional branches in parallel programs

El-Rewini, H. & Ali, H. H., Jan 1995, In : Journal of Parallel and Distributed Computing. 24, 1, p. 41-54 14 p.

Research output: Contribution to journalArticle

7 Scopus citations

Task scheduling in multiprocessing systems

El-Rewini, H., Ali, H. H. & Lewis, T., Dec 1995, In : Computer. 28, 12, p. 27-37 11 p.

Research output: Contribution to journalArticle

103 Scopus citations
1994

On considering communication in scheduling task graphs on parallel processors

El-Rewini, H. & Ali, H. H., Jan 1 1994, In : Parallel Algorithms and Applications. 3, 3-4, p. 177-191 15 p.

Research output: Contribution to journalArticle

5 Scopus citations

On the intractability of task allocation in distributed systems

Ali, H. H. & El-Rewini, H., Jun 1994, In : Parallel Processing Letters. 4, 1-2, p. 149-157 9 p.

Research output: Contribution to journalArticle

3 Scopus citations