Irina V Agarkova

  • 1254 Citations
  • 15 h-Index
20052020

Research output per year

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Research Output

  • 1254 Citations
  • 15 h-Index
  • 27 Article
  • 3 Review article
  • 2 Comment/debate
  • 1 Letter
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Article
2020

Genetic diversity of potassium ion channel proteins encoded by chloroviruses that infect chlorella heliozoae

Murry, C. R., Agarkova, I. V., Ghosh, J. S., Fitzgerald, F. C., Carlson, R. M., Hertel, B., Kukovetz, K., Rauh, O., Thiel, G. & Van Etten, J. L., Jun 2020, In : Viruses. 12, 6, 678.

Research output: Contribution to journalArticle

Open Access
2019

Chloroviruses lure hosts through long-distance chemical signaling

Dunigan, D. D., Al-Sammak, M., Al-Ameeli, Z., Agarkova, I. V., DeLong, J. P. & Van Etten, J. L., 2019, In : Journal of virology. 93, 7, e01688.

Research output: Contribution to journalArticle

1 Scopus citations

Near-atomic structure of a giant virus

Fang, Q., Zhu, D., Agarkova, I., Adhikari, J., Klose, T., Liu, Y., Chen, Z., Sun, Y., Gross, M. L., Van Etten, J. L., Zhang, X. & Rossmann, M. G., Dec 1 2019, In : Nature communications. 10, 1, 388.

Research output: Contribution to journalArticle

14 Scopus citations

The N-glycan structures of the antigenic variants of chlorovirus PBCV-1 major capsid protein help to identify the virus-encoded glycosyltransferases

Speciale, I., Duncan, G. A., Unione, L., Agarkova, I. V., Garozzo, D., Jimenez-Barbero, J., Lin, S., Lowary, T. L., Molinaro, A., Noel, E., Laugieri, M. E., Tonetti, M. G., Van Etten, J. L. & De Castro, C., Apr 5 2019, In : Journal of Biological Chemistry. 294, 14, p. 5688-5699 12 p.

Research output: Contribution to journalArticle

2 Scopus citations
2017

Characterization of a new chlorovirus type with permissive and non-permissive features on phylogenetically related algal strains

Quispe, C. F., Esmael, A., Sonderman, O., McQuinn, M., Agarkova, I., Battah, M., Duncan, G. A., Dunigan, D. D., Smith, T. P. L., De Castro, C., Speciale, I., Ma, F. & Van Etten, J. L., Jan 1 2017, In : Virology. 500, p. 103-113 11 p.

Research output: Contribution to journalArticle

11 Scopus citations

Structure of the N-glycans from the chlorovirus NE-JV-1

Speciale, I., Agarkova, I., Duncan, G. A., Van Etten, J. L. & De Castro, C., Nov 1 2017, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 110, 11, p. 1391-1399 9 p.

Research output: Contribution to journalArticle

4 Scopus citations
2016

Effect of Chlorovirus ATCV-1 infection on behavior of C57Bl/6 mice

Petro, M. S., Agarkova, I. V. & Petro, T. M., Aug 15 2016, In : Journal of Neuroimmunology. 297, p. 46-55 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

Genome analysis and development of a multiplex TaqMan real-time PCR for specific identification and detection of clavibacter michiganensis subsp. Nebraskensis

Tambong, J. T., Xu, R., Daayf, F., Brière, S., Bilodeau, G. J., Tropiano, R., Hartke, A., Reid, L. M., Cott, M., Cote, T. & Agarkova, I., Dec 2016, In : Phytopathology. 106, 12, p. 1473-1485 13 p.

Research output: Contribution to journalArticle

6 Scopus citations

N-Linked Glycans of Chloroviruses Sharing a Core Architecture without Precedent

De Castro, C., Speciale, I., Duncan, G., Dunigan, D. D., Agarkova, I., Lanzetta, R., Sturiale, L., Palmigiano, A., Garozzo, D., Molinaro, A., Tonetti, M. & Van Etten, J. L., Jan 11 2016, In : Angewandte Chemie - International Edition. 55, 2, p. 654-658 5 p.

Research output: Contribution to journalArticle

18 Scopus citations
2015
8 Scopus citations
2014

Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice

Yolken, R. H., Jones-Brando, L., Dunigan, D. D., Kannan, G., Dickerson, F., Severance, E., Sabunciyan, S., Talbot, C. C., Prandovszky, E., Gurnon, J. R., Agarkova, I. V., Leister, F., Gressitt, K. L., Chen, O., Deuber, B., Ma, F., Pletnikov, M. V. & Van Etten, J. L., Nov 11 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 45, p. 16106-16111 6 p.

Research output: Contribution to journalArticle

Open Access
65 Scopus citations

Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice

Yolken, R. H., Jones-Brando, L., Dunigan, D. D., Kannan, G., Dickerson, F., Severance, E., Sabunciyan, S., Talbot, C. C., Prandovszky, E., Gurnon, J. R., Agarkova, I. V., Leister, F., Gressitt, K. L., Chen, O., Deuber, B., Ma, F., Pletnikov, M. V. & Van Etten, J. L., Nov 11 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 45, p. 16106-16111 6 p.

Research output: Contribution to journalArticle

Deep RNA sequencing reveals hidden features and dynamics of early gene transcription in Paramecium bursaria chlorella virus 1

Blanc, G., Mozar, M., Agarkova, I. V., Gurnon, J. R., Yanai-Balser, G., Rowe, J. M., Xia, Y., Riethoven, J. J., Dunigan, D. D. & Van Etten, J. L., Mar 7 2014, In : PloS one. 9, 3, e90989.

Research output: Contribution to journalArticle

19 Scopus citations

Dynamic attachment of Chlorovirus PBCV-1 to Chlorella variabilis

Agarkova, I., Hertel, B., Zhang, X., Lane, L., Tchourbanov, A., Dunigan, D. D., Thiel, G., Rossmann, M. G. & Van Etten, J. L., Oct 1 2014, In : Virology. 466-467, p. 95-102 8 p.

Research output: Contribution to journalArticle

10 Scopus citations
2013

Towards defining the chloroviruses: A genomic journey through a genus of large DNA viruses

Jeanniard, A., Dunigan, D. D., Gurnon, J. R., Agarkova, I. V., Kang, M., Vitek, J., Duncan, G., McClung, O. W., Larsen, M., Claverie, J. M., Van Etten, J. L. & Blanc, G., Mar 8 2013, In : BMC genomics. 14, 1, 158.

Research output: Contribution to journalArticle

52 Scopus citations
2012

Genetic diversity among Curtobacterium flaccumfaciens pv. flaccumfaciens populations in the American high plains

Agarkova, I. V., Lambrecht, P. A., Vidaver, A. K. & Harveson, R. M., Jun 2012, In : Canadian journal of microbiology. 58, 6, p. 788-801 14 p.

Research output: Contribution to journalArticle

14 Scopus citations

Paramecium bursaria chlorella virus 1 proteome reveals novel architectural and regulatory features of a giant virus

Dunigan, D. D., Cerny, R. L., Bauman, A. T., Roach, J. C., Lane, L. C., Agarkova, I. V., Wulser, K., Yanai-Balser, G. M., Gurnon, J. R., Vitek, J. C., Kronschnabel, B. J., Jeanniard, A., Blanc, G., Upton, C., Duncan, G. A., McClung, O. W., Ma, F. & Van Etten, J. L., Aug 2012, In : Journal of virology. 86, 16, p. 8821-8834 14 p.

Research output: Contribution to journalArticle

39 Scopus citations

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

Blanc, G., Agarkova, I., Grimwood, J., Kuo, A., Brueggeman, A., Dunigan, D. D., Gurnon, J., Ladunga, I., Lindquist, E., Lucas, S., Pangilinan, J., Pröschold, T., Salamov, A., Schmutz, J., Weeks, D., Yamada, T., Lomsadze, A., Borodovsky, M., Claverie, J. M., Grigoriev, I. V. & 1 others, Van Etten, J. L., May 25 2012, In : Genome biology. 13, 5, R39.

Research output: Contribution to journalArticle

162 Scopus citations
2011

Genetic diversity and population structure of Clavibacter michiganensis subsp. nebraskensis

Agarkova, I. V., Lambrecht, P. A. & Vidaver, A. K., Apr 21 2011, In : Canadian journal of microbiology. 57, 5, p. 366-374 9 p.

Research output: Contribution to journalArticle

16 Scopus citations
2010

Microarray analysis of Paramecium bursaria chlorella virus 1 transcription

Yanai-Balser, G. M., Duncan, G. A., Eudy, J. D., Wang, D., Li, X., Agarkova, I. V., Dunigan, D. D. & Van Etten, J. L., Jan 2010, In : Journal of virology. 84, 1, p. 532-542 11 p.

Research output: Contribution to journalArticle

32 Scopus citations

The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex

Blanc, G., Duncan, G., Agarkova, I., Borodovsky, M., Gurnon, J., Kuo, A., Lindquist, E., Lucas, S., Pangilinan, J., Polle, J., Salamov, A., Terry, A., Yamada, T., Dunigan, D. D., Grigoriev, I. V., Claverie, J. M. & van Etten, J. L., Sep 2010, In : Plant Cell. 22, 9, p. 2943-2955 13 p.

Research output: Contribution to journalArticle

322 Scopus citations
2008

Chlorovirus-mediated membrane depolarization of Chlorella alters secondary active transport of solutes

Agarkova, I., Dunigan, D., Gurnon, J., Greiner, T., Barres, J., Thiel, G. & Van Etten, J. L., Dec 2008, In : Journal of virology. 82, 24, p. 12181-12190 10 p.

Research output: Contribution to journalArticle

21 Scopus citations

Reclassification of subspecies of Acidovorax avenae as A. Avenae (Manns 1905) emend., A. cattleyae (Pavarino, 1911) comb. nov., A. citrulli Schaad et al., 1978) comb. nov., and proposal of A. oryzae sp. nov.

Schaad, N. W., Postnikova, E., Sechler, A., Claflin, L. E., Vidaver, A. K., Jones, J. B., Agarkova, I., Ignatov, A., Dickstein, E. & Ramundo, B. A., Dec 2008, In : Systematic and Applied Microbiology. 31, 6-8, p. 434-446 13 p.

Research output: Contribution to journalArticle

99 Scopus citations
2007

Genetic diversity in populations of Xanthomonas campestris pv. campestris in cruciferous weeds in central coastal CaliforniaN

Ignatov, A., Sechler, A., Schuenzel, E. L., Agarkova, I., Oliver, B., Vidaver, A. K. & Schaad, N. W., Jul 2007, In : Phytopathology. 97, 7, p. 803-812 10 p.

Research output: Contribution to journalArticle

18 Scopus citations
2006

Genetic characterization and diversity of Rathayibacter toxicus

Agarkova, I. V., Vidaver, A. K., Postnikova, E. N., Riley, I. T. & Schaad, N. W., Nov 2006, In : Phytopathology. 96, 11, p. 1270-1277 8 p.

Research output: Contribution to journalArticle

14 Scopus citations

Virion-associated restriction endonucleases of chloroviruses

Agarkova, I. V., Dunigan, D. D. & Van Etten, J. L., Aug 2006, In : Journal of virology. 80, 16, p. 8114-8123 10 p.

Research output: Contribution to journalArticle

52 Scopus citations
2005

Reclassification of Xanthomonas campestris pv. citri (ex Hasse 1915) Dye 1978 forms A, B/C/D, and E

Schaad, N. W., Postnikova, E., Lacy, G. H., Sechler, A., Agarkova, I., Stromberg, P. E., Stromberg, V. K. & Vidaver, A. K., Aug 1 2005, In : Systematic and Applied Microbiology. 28, 6, p. 494-518 25 p.

Research output: Contribution to journalArticle

93 Scopus citations