James D Eudy, PhD

  • 1623 Citations
  • 23 h-Index
19962019

Research output per year

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Research Output

  • 1623 Citations
  • 23 h-Index
  • 35 Article
  • 2 Review article
  • 1 Letter
1996

The construction of a yeast artificial chromosome (YAC) contig in the vicinity of the Usher syndrome type IIa (USH2A) gene in 1q41

Sumegi, J., Wang, J. Y., Zhen, D. K., Eudy, J. D., Talmadge, C. B., Li, B. F., Berglund, P., Weston, M. D., Yao, S. F., Ma-Edmonds, M., Overbeck, L., Kelley, P. M., Zabarovsky, E., Uzvolgyi, E., Stanbridge, E. J., Klein, G. & Kimberling, W. J., Jul 1 1996, In : Genomics. 35, 1, p. 79-86 8 p.

Research output: Contribution to journalArticle

27 Scopus citations
1997

Isolation of a novel human homologue of the gene coding for echinoderm microtubule-associated protein (EMAP) from the Usher syndrome type la locus at 14q32

Eudy, J. D., Ma-Edmonds, M., Yao, S. F., Talmadge, C. B., Kelley, P. M., Weston, M. D., Kimberling, W. J. & Sumegi, J., Jul 1 1997, In : Genomics. 43, 1, p. 104-106 3 p.

Research output: Contribution to journalArticle

33 Scopus citations
1998

Isolation of a gene encoding a novel member of the nuclear receptor superfamily from the critical region of usher syndrome type IIa at 1q41

Eudy, J. D., Yao, S., Weston, M. D., Ma-Edmonds, M., Talmadge, C. B., Cheng, J. J., Kimberling, W. J. & Sumegi, J., Jun 15 1998, In : Genomics. 50, 3, p. 382-384 3 p.

Research output: Contribution to journalArticle

110 Scopus citations

Isolation of a novel human homologue of the gene coding for echinoderm microtubule-associated protein (EMAP) from the Usher syndrome type la locus at 14q32

Eudy, J. D., Ma Edmonds, M., Yao, S. F., Talmadge, C. B., Kelley, P. M., Weston, M. D., Kimberling, W. J. & Sumegi, J., 1998, In : Journal of Laryngology and Otology. 112, 1, p. 113 1 p.

Research output: Contribution to journalArticle

Mutation of a gene encoding a protein with extracellular matrix motifs in Usher syndrome type IIa

Eudy, J. D., Weston, M. D., Yao, S., Hoover, D. M., Rehm, H. L., Ma-Edmonds, M., Yan, D., Ahmad, I., Cheng, J. J., Ayuso, C., Cremers, C., Davenport, S., Moller, C., Talmadge, C. B., Beisel, K. W., Tamayo, M., Morton, C. C., Swaroop, A., Kimberling, W. J. & Sumegi, J., Jun 12 1998, In : Science. 280, 5370, p. 1753-1757 5 p.

Research output: Contribution to journalArticle

263 Scopus citations
1999

Molecular genetics of Usher syndrome

Eudy, J. D. & Sumegi, J., Oct 15 1999, In : Cellular and Molecular Life Sciences. 56, 3-4, p. 258-267 10 p.

Research output: Contribution to journalReview article

20 Scopus citations
2000

Genomic structure and identification of novel mutations in Usherin, the gene responsible for usher syndrome type IIa

Weston, M. D., Eudy, J. D., Fujita, S., Yao, S. F., Usami, S., Cremers, C., Greenburg, J., Ramesar, R., Martini, A., Moller, C., Smith, R. J., Sumegi, J. & Kimberling, W. J., 2000, In : American Journal of Human Genetics. 66, 4, p. 1199-1210 12 p.

Research output: Contribution to journalArticle

129 Scopus citations

Identification and characterization of the human and mouse SLC19A3 gene: A novel member of the reduced folate family of micronutrient transporter genes

Eudy, J. D., Spiegelstein, O., Barber, R. C., Wlodarczyk, B. J., Talbot, J. & Finnell, R. H., 2000, In : Molecular Genetics and Metabolism. 71, 4, p. 581-590 10 p.

Research output: Contribution to journalArticle

98 Scopus citations

Identification of two putative novel folate receptor genes in humans and mouse

Spiegelstein, O., Eudy, J. D. & Finnell, R. H., Nov 27 2000, In : Gene. 258, 1-2, p. 117-125 9 p.

Research output: Contribution to journalArticle

66 Scopus citations
2002

Identification of the mouse and rat orthologs of the gene mutated in Usher syndrome type IIA and the cellular source of USH2A mRNA in retina, a target tissue of the disease

Huang, D., Eudy, J. D., Uzvolgyi, E., Davis, J. R., Talmadge, C. B., Pretto, D., Weston, M. D., Lehman, J. E., Zhou, M., Seemayer, T. A., Ahmad, I., Kimberling, W. J. & Sumegi, J., 2002, In : Genomics. 80, 2, p. 195-203 9 p.

Research output: Contribution to journalArticle

12 Scopus citations

Molecular basis of environmentally induced birth defects

Finnell, R. H., Gelineau-van Waes, J., Eudy, J. D. & Rosenquist, T. H., 2002, In : Annual Review of Pharmacology and Toxicology. 42, p. 181-208 28 p.

Research output: Contribution to journalReview article

83 Scopus citations
2003
Open Access
36 Scopus citations
2004

Distinct gene expression profiles in different B-cell compartments in human peripheral lymphoid organs

Shen, Y., Iqbal, J., Xiao, L., Lynch, R. C., Rosenwald, A., Staudt, L. M., Sherman, S., Dybkaer, K., Zhou, G., Eudy, J. D., Delabie, J., McKeithan, T. W. & Chan, W. C., Sep 15 2004, In : BMC Immunology. 5, 20.

Research output: Contribution to journalArticle

40 Scopus citations
2005

Casodex treatment induces hypoxia-related gene expression in the LNCaP prostate cancer progression model

Rothermund, C. A., Gopalakrishnan, V. K., Eudy, J. D. & Vishwanatha, J. K., Mar 24 2005, In : BMC Urology. 5, 5.

Research output: Contribution to journalArticle

15 Scopus citations
2007

ATM, CTLA4, MNDA, and HEM1 in high versus low CD38-expressing B-cell chronic lymphocytic leukemia

Joshi, A. D., Hegde, G. V., Dickinson, J. D., Mittal, A. K., Lynch, J. C., Eudy, J. D., Armitage, J. O., Bierman, P. J., Bociek, R. G., Devetten, M. P., Vose, J. M. & Joshi, S. S., Sep 15 2007, In : Clinical Cancer Research. 13, 18, p. 5295-5304 10 p.

Research output: Contribution to journalArticle

36 Scopus citations
2008

Altered expression of the iron transporter Nramp1 (Slc11a1) during fetal development of the retinal pigment epithelium in microphthalmia-associated transcription factor Mitfmi and Mitfvitiligo mouse mutants

Gelineau-van Waes, J., Smith, L., van Waes, M., Wilberding, J., Eudy, J. D., Bauer, L. K. & Maddox, J., Feb 2008, In : Experimental Eye Research. 86, 2, p. 419-433 15 p.

Research output: Contribution to journalArticle

5 Scopus citations

Array-based comparative genomic hybridization analysis of 1176 consecutive clinical genetics investigations

Pickering, D. L., Eudy, J. D., Olney, A. H., Dave, B. J., Golden, D., Stevens, J. & Sanger, W. G., Apr 2008, In : Genetics in Medicine. 10, 4, p. 262-266 5 p.

Research output: Contribution to journalArticle

42 Scopus citations

Differential expression in lung and bronchial lymph node of pigs with high and low responses to infection with porcine reproductive and respiratory syndrome virus

Bates, J. S., Petry, D. B., Eudy, J., Bough, L. & Johnson, R. K., Dec 2008, In : Journal of animal science. 86, 12, p. 3279-3289 11 p.

Research output: Contribution to journalArticle

15 Scopus citations

Genome-wide expression profiling reveals transcriptomic variation and perturbed gene networks in androgen-dependent and androgen-independent prostate cancer cells

Singh, A. P., Bafna, S., Chaudhary, K., Venkatraman, G., Smith, L., Eudy, J. D., Johansson, S. L., Lin, M. F. & Batra, S. K., Jan 18 2008, In : Cancer Letters. 259, 1, p. 28-38 11 p.

Research output: Contribution to journalArticle

67 Scopus citations

Microarray analysis of E9.5 reduced folate carrier (RFC1; Slc19a1) knockout embryos reveals altered expression of genes in the cubilin-megalin multiligand endocytic receptor complex

Gelineau-Van Waes, J., Maddox, J. R., Smith, L. M., Van Waes, M., Wilberding, J., Eudy, J. D., Bauer, L. K. & Finnell, R. H., Apr 9 2008, In : BMC genomics. 9, 156.

Research output: Contribution to journalArticle

20 Scopus citations

MUC4, a multifunctional transmembrane glycoprotein, induces oncogenic transformation of NIH3T3 mouse fibroblast cells

Bafna, S., Singh, A. P., Moniaux, N., Eudy, J. D., Meza, J. L. & Batra, S. K., Nov 15 2008, In : Cancer Research. 68, 22, p. 9231-9238 8 p.

Research output: Contribution to journalArticle

42 Scopus citations
2009

CD38 regulation in activated astrocytes: Implications for neuroinflammation and HIV-1 brain infection

Kou, W., Banerjee, S., Eudy, J., Smith, L. M., Persidsky, R., Borgmann, K., Wu, L., Sakhuja, N., Deshpande, M. S., Walseth, T. F. & Ghorpade, A., Aug 1 2009, In : Journal of Neuroscience Research. 87, 10, p. 2326-2339 14 p.

Research output: Contribution to journalArticle

29 Scopus citations

The canonical Wnt pathway regulates retinal stem cells/progenitors in concert with notch signaling

Das, A. V., Bhattacharya, S., Zhao, X., Hegde, G., Mallya, K., Eudy, J. D. & Ahmad, I., Jan 2009, In : Developmental Neuroscience. 30, 6, p. 389-409 21 p.

Research output: Contribution to journalArticle

26 Scopus citations
2010

18q22.3 → 18q23 deletion syndrome and cleft palate

Eudy, J. D., Pickering, D. L., Lutz, R., Platt, K., Dave, B. J., Olney, A. H. & Sanger, W. G., Apr 2010, In : American Journal of Medical Genetics, Part A. 152, 4, p. 1046-1048 3 p.

Research output: Contribution to journalLetter

7 Scopus citations

Induced pluripotent stem cells generate both retinal ganglion cells and photoreceptors: Therapeutic implications in degenerative changes in glaucoma and age-related macular degeneration

Parameswaran, S., Balasubramanian, S., Babai, N., Qiu, F., Eudy, J. D., Thoreson, W. B. & Ahmad, I., Apr 2010, In : STEM CELLS. 28, 4, p. 695-703 9 p.

Research output: Contribution to journalArticle

92 Scopus citations

Microarray analysis of Paramecium bursaria chlorella virus 1 transcription

Yanai-Balser, G. M., Duncan, G. A., Eudy, J. D., Wang, D., Li, X., Agarkova, I. V., Dunigan, D. D. & Van Etten, J. L., Jan 2010, In : Journal of virology. 84, 1, p. 532-542 11 p.

Research output: Contribution to journalArticle

32 Scopus citations

Telomerase-immortalized human mammary stem/progenitor cells with ability to self-renew and differentiate

Zhao, X., Malhotra, G. K., Lele, S. M., Lele, M. S., West, W. W., Eudy, J. D., Band, H. & Band, V., Aug 10 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 32, p. 14146-14151 6 p.

Research output: Contribution to journalArticle

41 Scopus citations
2011

IRF4 is a suppressor of C-Myc induced B cell leukemia

Pathak, S., Ma, S., Trinh, L., Eudy, J., Wagner, K. U., Joshi, S. S. & Lu, R., 2011, In : PloS one. 6, 7, e22628.

Research output: Contribution to journalArticle

28 Scopus citations

miR-27b*, an oxidative stress-responsive microRNA modulates nuclear factor-kB pathway in RAW 264.7 cells

Thulasingam, S., Massilamany, C., Gangaplara, A., Dai, H., Yarbaeva, S., Subramaniam, S., Riethoven, J. J., Eudy, J., Lou, M. & Reddy, J., Jun 2011, In : Molecular and cellular biochemistry. 352, 1-2, p. 181-188 8 p.

Research output: Contribution to journalArticle

74 Scopus citations
2012

Cellular transcription factors induced in trigeminal ganglia during dexamethasone-induced reactivation from latency stimulate bovine herpesvirus 1 productive infection and certain viral promoters

Workman, A., Eudy, J., Smith, L., da Silva, L. F., Sinani, D., Bricker, H., Cook, E., Doster, A. & Jones, C., Mar 2012, In : Journal of virology. 86, 5, p. 2459-2473 15 p.

Research output: Contribution to journalArticle

29 Scopus citations

Mammalian alteration/deficiency in activation 3 (Ada3) is essential for embryonic development and cell cycle progression

Mohibi, S., Gurumurthy, C. B., Nag, A., Wang, J., Mirza, S., Mian, Y., Quinn, M., Katafiasz, B., Eudy, J. D., Pandey, S., Guda, C., Naramura, M., Band, H. & Band, V., Aug 24 2012, In : Journal of Biological Chemistry. 287, 35, p. 29442-29456 15 p.

Research output: Contribution to journalArticle

18 Scopus citations
2013

Attachment-regulated signaling networks in the fibroblast-populated 3D collagen matrix

Carlson, M. A., Smith, L. M., Cordes, C. M., Chao, J. & Eudy, J. D., 2013, In : Scientific reports. 3, 1880.

Research output: Contribution to journalArticle

8 Scopus citations

Genome-Wide Mutation Avalanches Induced in Diploid Yeast Cells by a Base Analog or an APOBEC Deaminase

Lada, A. G., Stepchenkova, E. I., Waisertreiger, I. S. R., Noskov, V. N., Dhar, A., Eudy, J. D., Boissy, R. J., Hirano, M., Rogozin, I. B. & Pavlov, Y. I., Sep 2013, In : PLoS genetics. 9, 9, e1003736.

Research output: Contribution to journalArticle

39 Scopus citations
2015

Genome-wide gene expression in relation to age in large laboratory cohorts of drosophila melanogaster

Carlson, K. A., Gardner, K., Pashaj, A., Carlson, D. J., Yu, F., Eudy, J. D., Zhang, C. & Harshman, L. G., 2015, In : Genetics Research International. 2015, 835624.

Research output: Contribution to journalArticle

14 Scopus citations
2016

Targeted myocardial gene expression in failing hearts by RNA sequencing

Dhar, K., Moulton, A. M., Rome, E., Qiu, F., Kittrell, J., Raichlin, E., Zolty, R., Um, J. Y., Moulton, M. J., Basma, H., Anderson, D. R., Eudy, J. D. & Lowes, B. D., Nov 25 2016, In : Journal of Translational Medicine. 14, 1, 327.

Research output: Contribution to journalArticle

6 Scopus citations
2017

Effects of the synthetic corticosteroid dexamethasone on bovine herpesvirus 1 productive infection

Zhu, L., Thompson, J., Ma, F., Eudy, J. & Jones, C., May 1 2017, In : Virology. 505, p. 71-79 9 p.

Research output: Contribution to journalArticle

9 Scopus citations
2019

Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: A multi-center evaluation

Gurumurthy, C. B., O'Brien, A. R., Quadros, R. M., Adams, J., Alcaide, P., Ayabe, S., Ballard, J., Batra, S. K., Beauchamp, M. C., Becker, K. A., Bernas, G., Brough, D., Carrillo-Salinas, F., Chan, W., Chen, H., Dawson, R., Demambro, V., D'Hont, J., Dibb, K. M., Eudy, J. D. & 93 others, Gan, L., Gao, J., Gonzales, A., Guntur, A. R., Guo, H., Harms, D. W., Harrington, A., Hentges, K. E., Humphreys, N., Imai, S., Ishii, H., Iwama, M., Jonasch, E., Karolak, M., Keavney, B., Khin, N. C., Konno, M., Kotani, Y., Kunihiro, Y., Lakshmanan, I., Larochelle, C., Lawrence, C. B., Li, L., Lindner, V., Liu, X. D., Lopez-Castejon, G., Loudon, A., Lowe, J., Jerome-Majewska, L. A., Matsusaka, T., Miura, H., Miyasaka, Y., Morpurgo, B., Motyl, K., Nabeshima, Y. I., Nakade, K., Nakashiba, T., Nakashima, K., Obata, Y., Ogiwara, S., Ouellet, M., Oxburgh, L., Piltz, S., Pinz, I., Ponnusamy, M. P., Ray, D., Redder, R. J., Rosen, C. J., Ross, N., Ruhe, M. T., Ryzhova, L., Salvador, A. M., Alam, S. S., Sedlacek, R., Sharma, K., Smith, C., Staes, K., Starrs, L., Sugiyama, F., Takahashi, S., Tanaka, T., Trafford, A. W., Uno, Y., Vanhoutte, L., Vanrockeghem, F., Willis, B. J., Wright, C. S., Yamauchi, Y., Yi, X., Yoshimi, K., Zhang, X., Zhang, Y., Ohtsuka, M., Das, S., Garry, D. J., Hochepied, T., Thomas, P., Parker-Thornburg, J., Adamson, A. D., Yoshiki, A., Schmouth, J. F., Golovko, A., Thompson, W. R., Lloyd, K. C. K., Wood, J. A., Cowan, M., Mashimo, T., Mizuno, S., Zhu, H., Kasparek, P., Liaw, L., Miano, J. M. & Burgio, G., Aug 26 2019, In : Genome biology. 20, 1, 171.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Splice-altering variant in COL11A1 as a cause of nonsyndromic hearing loss DFNA37

Booth, K. T., Askew, J. W., Talebizadeh, Z., Huygen, P. L. M., Eudy, J., Kenyon, J., Hoover, D., Hildebrand, M. S., Smith, K. R., Bahlo, M., Kimberling, W. J., Smith, R. J. H., Azaiez, H. & Smith, S. D., Apr 1 2019, In : Genetics in Medicine. 21, 4, p. 948-954 7 p.

Research output: Contribution to journalArticle

10 Scopus citations