Jean-Jack M Riethoven

  • 1318 Citations
  • 17 h-Index
1991 …2020

Research output per year

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Research Output

2020

An evidence for surface expression of an immunogenic epitope of sarcoplasmic/endoplasmic reticulum calcium-ATPase2a on antigen-presenting cells from naive mice in the mediation of autoimmune myocarditis

Arumugam, R., Yalaka, B., Massilamany, C., Haider Ali, M. S. S., Lasrado, N., Jayaraja, S., Riethoven, J. J., Sun, X. & Reddy, J., Mar 2020, In : Immunobiology. 225, 2, 151896.

Research output: Contribution to journalArticle

Host transcriptional response to persistent infection with a live-attenuated porcine reproductive and respiratory syndrome virus strain

Chaudhari, J., Liew, C. S., Workman, A. M., Riethoven, J. J. M., Steffen, D., Sillman, S. & Vu, H. L. X., Aug 2020, In : Viruses. 12, 8, 817.

Research output: Contribution to journalArticle

Open Access

Viral myocarditis involves the generation of autoreactive T cells with multiple antigen specificities that localize in lymphoid and non-lymphoid organs in the mouse model of CVB3 infection

Basavalingappa, R. H., Arumugam, R., Lasrado, N., Yalaka, B., Massilamany, C., Gangaplara, A., Riethoven, J. J., Xiang, S. H., Steffen, D. & Reddy, J., Aug 2020, In : Molecular Immunology. 124, p. 218-228 11 p.

Research output: Contribution to journalArticle

2019

Post-ER Stress Biogenesis of Golgi Is Governed by Giantin

Frisbie, C. P., Lushnikov, A. Y., Krasnoslobodtsev, A. V., Riethoven, J. J. M., Clarke, J. L., Stepchenkova, E. I. & Petrosyan, A., Dec 13 2019, In : Cells. 8, 12

Research output: Contribution to journalArticle

Open Access

The role of alcohol-induced Golgi fragmentation for androgen receptor signaling in prostate cancer

Manca, S., Frisbie, C. P., LaGrange, C. A., Casey, C. A., Riethoven, J. J. M. & Petrosyan, A., Jan 1 2019, In : Molecular Cancer Research. 17, 1, p. 225-237 13 p.

Research output: Contribution to journalArticle

3 Scopus citations
2018

Epitope Mapping of SERCA2a Identifies an Antigenic Determinant That Induces Mainly Atrial Myocarditis in A/J Mice

Krishnan, B., Massilamany, C., Basavalingappa, R. H., Gangaplara, A., Rajasekaran, R. A., Afzal, M. Z., Khalilzad-Sharghi, V., Zhou, Y., Riethoven, J. J., Nandi, S. S., Mishra, P. K., Sobel, R. A., Strande, J. L., Steffen, D. & Reddy, J., Jan 15 2018, In : Journal of Immunology. 200, 2, p. 523-537 15 p.

Research output: Contribution to journalArticle

2 Scopus citations

Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)

Hovde, B. T., Hanschen, E. R., Steadman Tyler, C. R., Lo, C. C., Kunde, Y., Davenport, K., Daligault, H., Msanne, J., Canny, S., Eyun, S. I., Riethoven, J. J. M., Polle, J. & Starkenburg, S. R., Nov 2018, In : Algal Research. 35, p. 449-461 13 p.

Research output: Contribution to journalArticle

6 Scopus citations
13 Scopus citations
2017

Branched chain α-ketoacid dehydrogenase kinase 111-130, a T cell epitope that induces both autoimmune myocarditis and hepatitis in A/J mice

Krishnan, B., Massilamany, C., Basavalingappa, R. H., Gangaplara, A., Kang, G., Li, Q., Uzal, F. A., Strande, J. L., Delhon, G. A., Riethoven, J. J., Steffen, D. & Reddy, J., 2017, In : Immunity Inflammation and Disease. 5, 4, p. 421-434 14 p.

Research output: Contribution to journalArticle

5 Scopus citations

Genomics Symposium: Using genomic approaches to uncover sources of variation in age at puberty and reproductive longevity in sows

Wijesena, H. R., Lents, C. A., Riethoven, J. J., Trenhaile-Grannemann, M. D., Thorson, J. F., Keel, B. N., Miller, P. S., Spangler, M. L., Kachman, S. D. & Ciobanu, D. C., Sep 2017, In : Journal of animal science. 95, 9, p. 4196-4205 10 p.

Research output: Contribution to journalArticle

5 Scopus citations

β1-adrenergic receptor contains multiple IAk and IEk binding epitopes that induce T cell responses with varying degrees of autoimmune myocarditis in A/J mice

Basavalingappa, R. H., Massilamany, C., Krishnan, B., Gangaplara, A., Rajasekaran, R. A., Afzal, M. Z., Riethoven, J. J., Strande, J. L., Steffen, D. & Reddy, J., Nov 20 2017, In : Frontiers in immunology. 8, NOV, 1567.

Research output: Contribution to journalArticle

3 Scopus citations
2016

Identification of an Epitope from Adenine Nucleotide Translocator 1 That Induces Inflammation in Heart in A/J Mice

Basavalingappa, R. H., Massilamany, C., Krishnan, B., Gangaplara, A., Kang, G., Khalilzad-Sharghi, V., Han, Z., Othman, S., Li, Q., Riethoven, J. J., Sobel, R. A., Steffen, D. & Reddy, J., Dec 1 2016, In : American Journal of Pathology. 186, 12, p. 3160-3175 16 p.

Research output: Contribution to journalArticle

6 Scopus citations
2015

Arabidopsis MSH1 mutation alters the epigenome and produces heritable changes in plant growth

Virdi, K. S., Laurie, J. D., Xu, Y. Z., Yu, J., Shao, M. R., Sanchez, R., Kundariya, H., Wang, D., Riethoven, J. J. M., Wamboldt, Y., Arrieta-Montiel, M. P., Shedge, V. & Mackenzie, S. A., Feb 27 2015, In : Nature communications. 6, 6386.

Research output: Contribution to journalArticle

48 Scopus citations

Mutations in the 5' NTR and the non-structural protein 3A of the coxsackievirus B3 selectively attenuate myocarditogenicity

Massilamany, C., Gangaplara, A., Basavalingappa, R. H., Rajasekaran, R. A., Vu, H., Riethoven, J. J., Steffen, D., Pattnaik, A. K. & Reddy, J., Jun 22 2015, In : PloS one. 10, 6, e0131052.

Research output: Contribution to journalArticle

5 Scopus citations
35 Scopus citations

Overaccumulation of γ-glutamylcysteine in a jasmonate-hypersensitive arabidopsis mutant causes jasmonate-dependent growth inhibition

Wei, H. H., Rowe, M., Riethoven, J. J. M., Grove, R., Adamec, J., Jikumaru, Y. & Staswick, P., Sep 2015, In : Plant physiology. 169, 2, p. 1371-1381 11 p.

Research output: Contribution to journalArticle

3 Scopus citations
2014

Deep RNA sequencing reveals hidden features and dynamics of early gene transcription in Paramecium bursaria chlorella virus 1

Blanc, G., Mozar, M., Agarkova, I. V., Gurnon, J. R., Yanai-Balser, G., Rowe, J. M., Xia, Y., Riethoven, J. J., Dunigan, D. D. & Van Etten, J. L., Mar 7 2014, In : PloS one. 9, 3, e90989.

Research output: Contribution to journalArticle

20 Scopus citations

Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana

Ding, Y., Virlouvet, L., Liu, N., Riethoven, J. J., Fromm, M. & Avramova, Z., May 22 2014, In : BMC plant biology. 14, 1, 141.

Research output: Contribution to journalArticle

41 Scopus citations

De novo transcriptome assembly from fat body and flight muscles transcripts to identify morph-specific gene expression profiles in Gryllus firmus

Vellichirammal, N. N., Zera, A. J., Schilder, R. J., Wehrkamp, C., Riethoven, J. J. M. & Brisson, J. A., Jan 8 2014, In : PloS one. 9, 1, e82129.

Research output: Contribution to journalArticle

28 Scopus citations

Direct staining with major histocompatibility complex class II dextramers permits detection of antigen-specific, autoreactive CD4 T cells in situ

Massilamany, C., Gangaplara, A., Jia, T., Elowsky, C., Kang, G., Riethoven, J. J., Li, Q., Zhou, Y. & Reddy, J., Jan 27 2014, In : PloS one. 9, 1, e87519.

Research output: Contribution to journalArticle

12 Scopus citations
10 Scopus citations
2013

Characterization of genome-wide transcriptional changes in liver and adipose tissues of ZDF (fa/fa) rats fed R-α-lipoic acid by next-generation sequencing

Pashaj, A., Yi, X., Xia, M., Canny, S., Riethoven, J. J. M. & Moreau, R., Dec 1 2013, In : Physiological genomics. 45, 23, p. 1136-1143 8 p.

Research output: Contribution to journalArticle

15 Scopus citations

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

Ding, Y., Liu, N., Virlouvet, L., Riethoven, J. J., Fromm, M. & Avramova, Z., Dec 30 2013, In : BMC plant biology. 13, 1, 229.

Research output: Contribution to journalArticle

105 Scopus citations
2012

Divergent functions of the myotubularin (MTM) homologs AtMTM1 and AtMTM2 in Arabidopsis thaliana: Evolution of the plant MTM family

Ding, Y., Ndamukong, I., Zhao, Y., Xia, Y., Riethoven, J. J., Jones, D. R., Divecha, N. & Avramova, Z., Jun 2012, In : Plant Journal. 70, 5, p. 866-878 13 p.

Research output: Contribution to journalArticle

15 Scopus citations

EvolMarkers: A database for mining exon and intron markers for evolution, ecology and conservation studies

Li, C., Riethoven, J. J. M. & Naylor, G. J. P., Sep 2012, In : Molecular Ecology Resources. 12, 5, p. 967-971 5 p.

Research output: Contribution to journalArticle

12 Scopus citations
2011

Activated AMPK and prostaglandins are involved in the response to conjugated linoleic acid and are sufficient to cause lipid reductions in adipocytes

Jiang, S., Chen, H., Wang, Z., Riethoven, J. J., Xia, Y., Miner, J. & Fromm, M., Jul 2011, In : Journal of Nutritional Biochemistry. 22, 7, p. 656-664 9 p.

Research output: Contribution to journalArticle

12 Scopus citations

Microarray analysis of gene expression profiles in cells transfected with nonviral vectors

Plautz, S. A., Boanca, G., Riethoven, J. J. M. & Pannier, A. K., Dec 2011, In : Molecular Therapy. 19, 12, p. 2144-2151 8 p.

Research output: Contribution to journalArticle

13 Scopus citations

miR-27b*, an oxidative stress-responsive microRNA modulates nuclear factor-kB pathway in RAW 264.7 cells

Thulasingam, S., Massilamany, C., Gangaplara, A., Dai, H., Yarbaeva, S., Subramaniam, S., Riethoven, J. J., Eudy, J., Lou, M. & Reddy, J., Jun 2011, In : Molecular and cellular biochemistry. 352, 1-2, p. 181-188 8 p.

Research output: Contribution to journalArticle

75 Scopus citations
2010

Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana

van Dijk, K., Ding, Y., Malkaram, S., Riethoven, J. J. M., Liu, R., Yang, J., Laczko, P., Chen, H., Xia, Y., Ladunga, I., Avramova, Z. & Fromm, M., Nov 5 2010, In : BMC plant biology. 10, 238.

Research output: Contribution to journalArticle

114 Scopus citations

Exon-primed intron-crossing (EPIC) markers for non-model teleost fishes

Li, C. & Riethoven, J. J. M., 2010, In : BMC Evolutionary Biology. 10, 1, 90.

Research output: Contribution to journalArticle

46 Scopus citations
55 Scopus citations

Weakly positioned nucleosomes enhance the transcriptional competency of chromatin

Belch, Y., Yang, J., Liu, Y., Malkaram, S. A., Liu, R., Riethoven, J. J. M. & Ladunga, I., 2010, In : PloS one. 5, 9, e12984.

Research output: Contribution to journalArticle

7 Scopus citations
2009

ASTD: The Alternative Splicing and Transcript Diversity database

Koscielny, G., Texier, V. L., Gopalakrishnan, C., Kumanduri, V., Riethoven, J. J., Nardone, F., Stanley, E., Fallsehr, C., Hofmann, O., Kull, M., Harrington, E., Boué, S., Eyras, E., Plass, M., Lopez, F., Ritchie, W., Moucadel, V., Ara, T., Pospisil, H., Herrmann, A. & 9 others, G. Reich, J., Guigó, R., Bork, P., Doeberitz, M. V. K., Vilo, J., Hide, W., Apweiler, R., Thanaraj, T. A. & Gautheret, D., Mar 2009, In : Genomics. 93, 3, p. 213-220 8 p.

Research output: Contribution to journalArticle

76 Scopus citations

Conjugated linoleic acid activates AMP-activated protein kinase and reduces adiposity more effectively when used with metformin in mice

Jiang, S., Wang, Z., Riethoven, J. J., Xia, Y., Miner, J. & Fromm, M., Dec 2009, In : Journal of Nutrition. 139, 12, p. 2244-2251 8 p.

Research output: Contribution to journalArticle

13 Scopus citations

Herpesvirus infections in rock hyraxes (Procavia capensis)

Galeota, J. A., Napier, J. E., Armstrong, D. L., Riethoven, J. J. & Rogers, D. G., 2009, In : Journal of Veterinary Diagnostic Investigation. 21, 4, p. 531-535 5 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

The Arabidopsis chromatin modifier ATX1, the myotubularin-like AtMTM and the response to drought.

Ding, Y., Lapko, H., Ndamukong, I., Xia, Y., Al-Abdallat, A., Lalithambika, S., Sadder, M., Saleh, A., Fromm, M., Riethoven, J. J., Lu, G. & Avramova, Z., Nov 2009, In : Plant signaling & behavior. 4, 11, p. 1049-1058 10 p.

Research output: Contribution to journalArticle

Open Access
33 Scopus citations
2007

Trans-10, cis-12 conjugated linoleic acid activates the integrated stress response pathway in adipocytes

LaRosa, P. C., Riethoven, J. J. M., Chen, H., Xia, Y., Zhou, Y., Chen, M., Miner, J. & Fromm, M. E., Nov 14 2007, In : Physiological genomics. 31, 3, p. 544-553 10 p.

Research output: Contribution to journalArticle

31 Scopus citations
2006

AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation

Le Texier, V., Riethoven, J. J., Kumanduri, V., Gopalakrishnan, C., Lopez, F., Gautheret, D. & Thanaraj, T. A., Mar 23 2006, In : BMC bioinformatics. 7, 169.

Research output: Contribution to journalArticle

32 Scopus citations

ASD: a bioinformatics resource on alternative splicing.

Stamm, S., Riethoven, J. J., Le Texier, V., Gopalakrishnan, C., Kumanduri, V., Tang, Y., Barbosa-Morais, N. L. & Thanaraj, T. A., Jan 1 2006, In : Nucleic acids research. 34, Database issue, p. D46-55

Research output: Contribution to journalArticle

Open Access
190 Scopus citations
2004

ASD: The Alternative Splicing Database

Thanaraj, T. A., Stamm, S., Clark, F., Riethoven, J. J., Le Texier, V. & Muilu, J., Jan 1 2004, In : Nucleic acids research. 32, DATABASE ISS., p. D64-D69

Research output: Contribution to journalArticle

166 Scopus citations
2002

XEMBL: Distributing EMBL data in XML format

Wang, L., Riethoven, J. J. & Robinson, A., Aug 2002, In : Bioinformatics. 18, 8, p. 1147-1148 2 p.

Research output: Contribution to journalArticle

Open Access
32 Scopus citations
2000

Paradigm shifts in the approaches for gene annotation.

Thanaraj, T. A., Robinson, A., Muilu, J. & Riethoven, J. J., Nov 2000, In : Briefings in bioinformatics. 1, 4, p. 324-329 6 p.

Research output: Contribution to journalEditorial

Open Access
1997

Numerical optimization of nitrogen application to rice. Part II. Field evaluations

Ten Berge, H. F. M., Qinghua, S., Zheng, Z., Rao, K. S., Riethoven, J. J. M. & Zhong, X., Mar 1997, In : Field Crops Research. 51, 1-2, p. 43-54 12 p.

Research output: Contribution to journalArticle

12 Scopus citations
1992

Pinealectomy decelerates the circadian food intake rhythm of cervically sympathectomized rabbits

Bobbert, A. C., Duindam, H. & Riethoven, J. J., 1992, In : Chronobiology International. 9, 4, p. 297-309 13 p.

Research output: Contribution to journalArticle

2 Scopus citations

Porting and optimizing Star; A case study of suffering and surfacing

van Batenburg, F. H. D., Bos, V., Riethoven, J. J. M., Abrahams, J. P. & Pley, C., 1992, APL Quote Quad. 1 ed. Vol. 23. p. 265-274 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Porting and optimizing STAR; a case study of suffering and surfacing

van Batenburg, F. H. D., Bos, V., Riethoven, J. J. M., Abrahams, J. P. & Pley, C., 1992, International Conference on APL. Publ by ACM, p. 265-274 10 p. (International Conference on APL).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1991
12 Scopus citations