• 2940 Citations
  • 28 h-Index
1979 …2020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

2020

Differentiation of francisella tularensis subspecies and subtypes

Larson, M. A., Sayood, K., Bartling, A. M., Meyer, J. R., Starr, C., Baldwin, J. & Dempsey, M. P., 2020, In : Journal of clinical microbiology. 58, 4, e01495-19.

Research output: Contribution to journalArticle

Open Access
2019

MIMOSA: Algorithms for Microbial Profiling

Nalbantoglu, O. U. & Sayood, K., Nov 1 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 6, p. 2023-2034 12 p., 8350295.

Research output: Contribution to journalArticle

Online EEG seizure detection and localization

Mansouri, A., Singh, S. P. & Sayood, K., Sep 1 2019, In : Algorithms. 12, 9, 176.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
2018

Information theory and cognition: A review

Sayood, K., Sep 14 2018, In : Entropy. 20, 9, 706.

Research output: Contribution to journalReview article

5 Scopus citations
2017

Dictionary coded profiles and their use with nanopore sequencers

Murray, K., Dunigan, D. D. & Sayood, K., Sep 27 2017, 2017 IEEE International Conference on Electro Information Technology, EIT 2017. IEEE Computer Society, p. 422-426 5 p. 8053398. (IEEE International Conference on Electro Information Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hierarchal online temporal and spatial EEG seizure detection

Mansouri, A., Singh, S. & Sayood, K., Sep 27 2017, 2017 IEEE International Conference on Electro Information Technology, EIT 2017. IEEE Computer Society, p. 416-421 6 p. 8053397. (IEEE International Conference on Electro Information Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Use of average mutual information signatures to construct phylogenetic trees for fungi

Sayood, K., Atkin, A. L. & Newcomb, G., Sep 27 2017, 2017 IEEE International Conference on Electro Information Technology, EIT 2017. IEEE Computer Society, p. 398-403 6 p. 8053394. (IEEE International Conference on Electro Information Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Reclassification of Wolbachia persica as Francisella persica comb. nov. and emended description of the family Francisellaceae

Larson, M. A., Nalbantoglu, U., Sayood, K., Zentz, E. B., Cer, R. Z., Iwen, P. C., Francesconi, S. C., Bishop-Lilly, K. A., Mokashi, V. P., Sjöstedt, A. & Hinrichs, S. H., Mar 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 3, p. 1200-1205 6 p.

Research output: Contribution to journalArticle

16 Scopus citations
2015

Francisella tularensis subtype A.II genomic plasticity in comparison with subtype A.I

Larson, M. A., Nalbantoglu, U., Sayood, K., Zentz, E. B., Bartling, A. M., Francesconi, S. C., Fey, P. D., Dempsey, M. P. & Hinrichs, S. H., Apr 28 2015, In : PloS one. 10, 4, e0124906.

Research output: Contribution to journalArticle

1 Scopus citations
2014

Compression of quality factors in next generation sequencing

Nalbantoĝlu, O. U. & Sayood, K., 2014, Proceedings - DCC 2014: 2014 Data Compression Conference. Institute of Electrical and Electronics Engineers Inc., 1 p. 6824471. (Data Compression Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Data compression

Ufuk Nalbantoğlu, N. & Sayood, K., Jan 1 2014, Computing Handbook, Third Edition: Computer Science and Software Engineering. CRC Press, p. 48-1-48-35

Research output: Chapter in Book/Report/Conference proceedingChapter

Metagenomic analysis of the microbial community in kefir grains

Nalbantoglu, U., Cakar, A., Dogan, H., Abaci, N., Ustek, D., Sayood, K. & Can, H., Aug 2014, In : Food Microbiology. 41, p. 42-51 10 p.

Research output: Contribution to journalArticle

57 Scopus citations
2013

Digital image formats

Sayood, K., Nov 1 2013, Digital Image Forensics: There is More to a Picture than Meets the Eye. Springer New York, Vol. 9781461407577. p. 79-121 43 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2012

Characterization of the Acinetobacter baumannii growth phase-dependent and serum responsive transcriptomes

Jacobs, A. C., Sayood, K., Olmsted, S. B., Blanchard, C. E., Hinrichs, S., Russell, D. & Dunman, P. M., Apr 2012, In : FEMS Immunology and Medical Microbiology. 64, 3, p. 403-412 10 p.

Research output: Contribution to journalArticle

30 Scopus citations

Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308

Caswell, C. C., Gaines, J. M., Ciborowski, P., Smith, D., Borchers, C. H., Roux, C. M., Sayood, K., Dunman, P. M. & Roop, R. M., Jul 2012, In : Molecular Microbiology. 85, 2, p. 345-360 16 p.

Research output: Contribution to journalArticle

51 Scopus citations

Introduction to Data Compression

Sayood, K., 2012, Elsevier Inc.

Research output: Book/ReportBook

191 Scopus citations
2011

Computational genomic signatures

Nalbantoglu, O. U. & Sayood, K., May 31 2011, Computational Genomic Signatures. p. 1-129 129 p. (Synthesis Lectures on Biomedical Engineering; vol. 41).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles

Nalbantoglu, O. U., Way, S. F., Hinrichs, S. H. & Sayood, K., Jan 31 2011, In : BMC bioinformatics. 12, 41.

Research output: Contribution to journalArticle

49 Scopus citations

Small molecule inhibitors of staphylococcus aureus RnpA alter cellular mRNA turnover, exhibit antimicrobial activity, and attenuate pathogenesis

Olson, P. D., Kuechenmeister, L. J., Anderson, K. L., Daily, S., Beenken, K. E., Roux, C. M., Reniere, M. L., Lewis, T. L., Weiss, W. J., Pulse, M., Nguyen, P., Simecka, J. W., Morrison, J. M., Sayood, K., Asojo, O. A., Smeltzer, M. S., Skaar, E. P. & Dunman, P. M., Feb 2011, In : PLoS pathogens. 7, 2, e1001287.

Research output: Contribution to journalArticle

41 Scopus citations
2010

Acinetobacter baumannii increases tolerance to antibiotics in response to monovalent cations

Hood, M. I., Jacobs, A. C., Sayood, K., Dunman, P. M. & Skaar, E. P., Mar 2010, In : Antimicrobial Agents and Chemotherapy. 54, 3, p. 1029-1041 13 p.

Research output: Contribution to journalArticle

50 Scopus citations

A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences

Russell, D. J., Way, S. F., Benson, A. K. & Sayood, K., Dec 17 2010, In : BMC bioinformatics. 11, 601.

Research output: Contribution to journalArticle

29 Scopus citations

Data compression concepts and algorithms and their applications to bioinformatics

Nalbantog̃lu, Ö. U., Russell, D. J. & Sayood, K., Jan 2010, In : Entropy. 12, 1, p. 34-52 19 p.

Research output: Contribution to journalReview article

30 Scopus citations

Inactivation of phospholipase D diminishes Acinetobacter baumannii pathogenesis

Jacobs, A. C., Hood, I., Boyd, K. L., Olson, P. D., Morrison, J. M., Carson, S., Sayood, K., Iwen, P. C., Skaar, E. P. & Dunman, P. M., May 2010, In : Infection and immunity. 78, 5, p. 1952-1962 11 p.

Research output: Contribution to journalArticle

120 Scopus citations

Large direct repeats flank genomic rearrangements between a new clinical isolate of Francisella tularensis subsp. tularensis A1 and schu S4

Nalbantoglu, U., Sayood, K., Dempsey, M. P., Iwen, P. C., Francesconi, S. C., Barabote, R. D., Xie, G., Brettin, T. S., Hinrichs, S. H. & Fey, P. D., Feb 3 2010, In : PloS one. 5, 2, e9007.

Research output: Contribution to journalArticle

13 Scopus citations
2009

Joint source channel coding using arithmetic codes

Bi, D., Hoffman, M. W. & Sayood, K., Nov 12 2009, In : Synthesis Lectures on Communications. 4, p. 1-77 77 p.

Research output: Contribution to journalArticle

Use of average mutual information for studying changes in HIV populations

Sayood, K., Hoffman, F. & Wood, C., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3861-3864 4 p. 5332579. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2008

Grammar-based distance in progressive multiple sequence alignment

Russell, D. J., Otu, H. H. & Sayood, K., Jul 10 2008, In : BMC bioinformatics. 9, 306.

Research output: Contribution to journalArticle

32 Scopus citations

Hyperthermophilic Aquifex aeolicus initiates primer synthesis on a limited set of trinucleotides comprised of cytosines and guanines

Larson, M. A., Bressani, R., Sayood, K., Corn, J. E., Berger, J. M., Griep, M. A. & Hinrichs, S. H., 2008, In : Nucleic acids research. 36, 16, p. 5260-5269 10 p.

Research output: Contribution to journalArticle

10 Scopus citations

Predictive coding on-sensor compression

Leon-Salas, W. D., Balkir, S., Schemm, N., Hoffman, M. W. & Sayood, K., 2008, 2008 IEEE International Symposium on Circuits and Systems, ISCAS 2008. p. 1636-1639 4 p. 4541748. (Proceedings - IEEE International Symposium on Circuits and Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

The average mutual information profile as a genomic signature

Bauer, M., Schuster, S. M. & Sayood, K., Jan 25 2008, In : BMC bioinformatics. 9, 48.

Research output: Contribution to journalArticle

31 Scopus citations
2007

A CMOS imager with focal plane compression using predictive coding

León-Salas, W. D., Balkir, S., Sayood, K., Schemm, N. & Hoffman, M. W., Nov 2007, In : IEEE Journal of Solid-State Circuits. 42, 11, p. 2555-2572 18 p., 4362102.

Research output: Contribution to journalArticle

49 Scopus citations

A low-complexity circuit for on-sensor concurrent A/D conversion and compression

Leon-Salas, W. D., Balkir, S., Sayood, K., Schemm, N. & Hoffman, M. W., Sep 2007, In : IEEE Sensors Journal. 7, 9, p. 1317-1324 8 p.

Research output: Contribution to journalArticle

5 Scopus citations

Lossless hyperspectral-image compression using context-based conditional average

Wang, H., Babacan, S. D. & Sayood, K., Dec 2007, In : IEEE Transactions on Geoscience and Remote Sensing. 45, 12, p. 4187-4193 7 p.

Research output: Contribution to journalArticle

57 Scopus citations

Lossless video sequence compression using adaptive prediction

Li, Y. & Sayood, K., Apr 2007, In : IEEE Transactions on Image Processing. 16, 4, p. 997-1007 11 p.

Research output: Contribution to journalArticle

31 Scopus citations
2006

A CMOS imager with focal plane compression

Leon-Salas, W. D., Balkir, S., Sayood, K., Hoffman, M. W. & Schemm, N., 2006, ISCAS 2006: 2006 IEEE International Symposium on Circuits and Systems, Proceedings. p. 3570-3573 4 p. 1693398. (Proceedings - IEEE International Symposium on Circuits and Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

An Analog-to-Digital Converter With Golomb-Rice Output Codes

Leon-Salas, W. D., Balkir, S., Sayood, K. & Hoffman, M. W., Apr 6 2006, In : IEEE Transactions on Circuits and Systems II: Express Briefs. 53, 4, p. 278-282 5 p.

Research output: Contribution to journalArticle

11 Scopus citations

Introduction to Data Compression

Sayood, K., 2006, Elsevier Inc.

Research output: Book/ReportBook

285 Scopus citations

Learning programming using MATLAB

Sayood, K., 2006, In : Synthesis Lectures on Electrical Engineering. 3, p. 1-88 88 p.

Research output: Contribution to journalArticle

Lossless predictive compression of hyperspectral images

Wang, H. & Sayood, K., 2006, Hyperspectral Data Compression. Springer US, p. 35-55 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

State machine interpretation of arithmetic codes for joint source and channel coding

Bi, D., Hoffman, M. W. & Sayood, K., 2006, In : Data Compression Conference Proceedings. p. 143-152 10 p., 1607249.

Research output: Contribution to journalConference article

29 Scopus citations

Understanding circuits: Learning problem solving using circuit analysis

Sayood, K., Jan 1 2006, Synthesis Lectures on Electrical Engineering. p. 1-142 142 p. (Synthesis Lectures on Electrical Engineering; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingChapter

2005

A genome signature based on Markov modeling

Li, J. & Sayood, K., 2005, Proceedings of the 2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005. p. 2832-2835 4 p. 1617063. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; vol. 7 VOLS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

A genome signature based on Markov modeling

Li, J. & Sayood, K., 2005, 2005 IEEE International Conference on Electro Information Technology. 1627006. (2005 IEEE International Conference on Electro Information Technology; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An analog-to-digital converter with golomb-rice output codes

Leon, W. D., Balkir, S., Sayood, K. & Hoffman, M. W., 2005, In : Proceedings - IEEE International Symposium on Circuits and Systems. p. 5549-5552 4 p., 1465894.

Research output: Contribution to journalConference article

1 Scopus citations

A successively refinable lossless image-coding algorithm

Avcibaş, I., Memon, N., Sankur, B. & Sayood, K., Mar 2005, In : IEEE Transactions on Communications. 53, 3, p. 445-452 8 p.

Research output: Contribution to journalArticle

14 Scopus citations

Hard decision and iterative joint source channel coding using arithmetic codes

Xu, L., Hoffman, M. W. & Sayood, K., 2005, In : Data Compression Conference Proceedings. p. 203-212 10 p.

Research output: Contribution to journalConference article

7 Scopus citations

Lossless hyperspectral image compression using context-based conditional averages

Wang, H., Babacan, S. D. & Sayood, K., 2005, In : Data Compression Conference Proceedings. p. 418-426 9 p.

Research output: Contribution to journalConference article

17 Scopus citations

The use of average mutual information profile as a species signature

Bauer, M., Schuster, S. M. & Sayood, K., 2005, In : Data Compression Conference Proceedings. 1 p.

Research output: Contribution to journalConference article

2004

Charge-based prediction circuits for focal plane image compression

Leon, W. D., Balkir, S., Sayood, K. & Hoffman, M. W., 2004, In : Proceedings - IEEE International Symposium on Circuits and Systems. 4, p. IV-936-IV-939

Research output: Contribution to journalConference article

3 Scopus citations