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Mike Wiley, PhD

  • Phone215-870-0731
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20082025

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  • 2025

    SARS-CoV-2 genomic surveillance using self-collected saliva specimens during occupational testing programs

    Schnaubelt, A. T., Brett-Major, D. M., Williamson, J., Barcal, B., Carstens, J., Peer, A., Wiley, M. & Broadhurst, M. J., 2025, In: Frontiers in Public Health. 13, 1360862.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Utilizing whole genome sequencing to characterize central line-Associated bloodstream infections due to Staphylococcus epidermidis

    Zhou, C., Wiley, M., Wiley, J., Cawcutt, K., Grashorn, E., Rogers, K., McCutchen, E., Iwen, P., Fey, P. & Rupp, M., Mar 1 2025, In: Infection Control and Hospital Epidemiology. 46, 3, p. 312-315 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
  • 2024

    Eubacterium callanderi bacteremia: A case report

    Zhou, C., Schwee, C., Matovu, R. E., Wiley, J. D., Wiley, M. R., Berning, B. J., Iwen, P. C. & Fey, P. D., Jan 2024, In: IDCases. 36, e01989.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1 Scopus citations

  • SARS-CoV-2 surveillance and detection in wild, captive, and domesticated animals in Nebraska: 2021–2023

    Loy, D. S., Birn, R., Poonsuk, K., Tegomoh, B., Bartling, A., Wiley, M. R. & Loy, J. D., 2024, In: Frontiers in Veterinary Science. 11, 1496207.

    Research output: Contribution to journal › Article › peer-review

    Open Access
  • 2023

    Whole genome analysis and antimicrobial resistance of Neisseria gonorrhoeae isolates from Ghana

    Agbodzi, B., Duodu, S., Dela, H., Kumordjie, S., Yeboah, C., Behene, E., Ocansey, K., Yanney, J. N., Boateng-Sarfo, G., Kwofie, S. K., Egyir, B., Colston, S. M., Miranda, H. V., Watters, C., Sanders, T., Fox, A. T., Letizia, A. G., Wiley, M. R. & Attram, N., 2023, In: Frontiers in Microbiology. 14, 1163450.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    4 Scopus citations

  • Whole genome sequencing of outbreak strains from 2017 to 2018 reveals an endemic clade of dengue 1 virus in Cameroon

    Agbodzi, B., Sado Yousseu, F. B., Nemg Simo, F. B., Kumordjie, S., Yeboah, C., Mosore, M. T., Bentil, R. E., Coatsworth, H. G., Attram, N., Nimo-Paintsil, S., Fox, A. T., Bonney, J. H. K., Ampofo, W., Dinglasan, R. R., Sanders, T., Wiley, M. R., Demanou, M. & Letizia, A. G., 2023, In: Emerging Microbes and Infections. 12, 2, 2281352.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1 Scopus citations
  • 2022

    Molecular characterization of haemagglutinin genes of influenza B viruses circulating in Ghana during 2016 and 2017

    Yakubu, A. M., Aryee, N. A., Bonney, E. Y., Kotey, E. N., Bonney, J. H. K., Wiley, M. R., Pratt, C. B., Ababio, G. K., Nimo-Paintsil, S., Puplampu, N., Attoh, S., Fatchu, R. D., Nyarko, E. O., Fox, A., Watters, C. M., Sanders, T., Letizia, A. G. & Ampofo, W. K., Sep 2022, In: PloS one. 17, 9 September, e0271321.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1 Scopus citations

  • Phylogenetic and genetic characterization of influenza A H9N2 viruses isolated from backyard poultry in selected farms in Ghana

    Kotey, E. N., Asante, I. A., Adusei-Poku, M., Arjarquah, A., Ampadu, R., Rodgers, D., Nyarko, E. O., Asiedu, W., Dafeamekpor, C., Wiley, M. R., Mawuli, G., Obeng, R. A., Nyarko, S. O., Magnusen, V., Kodua, E., Attram, N., Nimo-Paintsil, S. C., Pratt, C., Fox, A. T. & Letizia, A. & 1 others, Ampofo, W. K., Jul 2022, In: Veterinary Medicine and Science. 8, 4, p. 1570-1577 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5 Scopus citations

  • Retrospective Genomic Characterization of a 2017 Dengue Virus Outbreak, Burkina Faso

    Letizia, A. G., Pratt, C. B., Wiley, M. R., Fox, A. T., Mosore, M., Agbodzi, B., Yeboah, C., Kumordjie, S., Di Paola, N., Assana, K. C., Coulidiaty, D., Ouedraogo, C., Kofi Bonney, J. H., Ampofo, W., Tarnagda, Z. & Sangaré, L., Jun 2022, In: Emerging infectious diseases. 28, 6, p. 1198-1210 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations

  • The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

    Africa Pathogen Genomics Initiative (Africa PGI), Oct 7 2022, In: Science. 378, 6615, eabq5358.

    Research output: Contribution to journal › Article › peer-review

    81 Scopus citations
  • 2021

    Assessment of a Program for SARS-CoV-2 Screening and Environmental Monitoring in an Urban Public School District

    Crowe, J., Schnaubelt, A. T., Schmidtbonne, S., Angell, K., Bai, J., Eske, T., Nicklin, M., Pratt, C., White, B., Crotts-Hannibal, B., Staffend, N., Herrera, V., Cobb, J., Conner, J., Carstens, J., Tempero, J., Bouda, L., Ray, M., Lawler, J. V. & Campbell, W. S. & 7 others, Lowe, J. M., Santarpia, J., Bartelt-Hunt, S., Wiley, M., Brett-Major, D., Logan, C. & Broadhurst, M. J., Sep 22 2021, In: JAMA Network Open. 4, 9, 26447.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    39 Scopus citations

  • A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

    Wilkinson, E., Giovanetti, M., Tegally, H., San, J. E., Lessells, R., Cuadros, D., Martin, D. P., Rasmussen, D. A., Zekri, A. R. N., Sangare, A. K., Ouedraogo, A. S., Sesay, A. K., Priscilla, A., Kemi, A. S., Olubusuyi, A. M., Oluwapelumi, A. O. O., Hammami, A., Amuri, A. A., Sayed, A. & Ouma, A. E. O. & 282 others, Elargoubi, A., Ajayi, N. A., Victoria, A. F., Kazeem, A., George, A., Trotter, A. J., Yahaya, A. A., Keita, A. K., Diallo, A., Kone, A., Souissi, A., Chtourou, A., Gutierrez, A. V., Page, A. J., Vinze, A., Iranzadeh, A., Lambisia, A., Ismail, A., Rosemary, A., Sylverken, A., Femi, A., Ibrahimi, A., Marycelin, B., Oderinde, B. S., Bolajoko, B., Dhaala, B., Herring, B. L., Njanpop-Lafourcade, B. M., Kleinhans, B., McInnis, B., Tegomoh, B., Brook, C., Pratt, C. B., Scheepers, C., Akoua-Koffi, C. G., Agoti, C. N., Peyrefitte, C., Daubenberger, C., Morang’a, C. M., James Nokes, D., Amoako, D. G., Bugembe, D. L., Park, D., Baker, D., Doolabh, D., Ssemwanga, D., Tshiabuila, D., Bassirou, D., Amuzu, D. S. Y., Goedhals, D., Omuoyo, D. O., Maruapula, D., Foster-Nyarko, E., Lusamaki, E. K., Simulundu, E., Ong’era, E. M., Ngabana, E. N., Shumba, E., El Fahime, E., Lokilo, E., Mukantwari, E., Philomena, E., Belarbi, E., Simon-Loriere, E., Anoh, E. A., Leendertz, F., Ajili, F., Enoch, F. O., Wasfi, F., Abdelmoula, F., Mosha, F. S., Takawira, F. T., Derrar, F., Bouzid, F., Onikepe, F., Adeola, F., Muyembe, F. M., Tanser, F., Dratibi, F. A., Mbunsu, G. K., Thilliez, G., Kay, G. L., Githinji, G., van Zyl, G., Awandare, G. A., Schubert, G., Maphalala, G. P., Ranaivoson, H. C., Lemriss, H., Anise, H., Abe, H., Karray, H. H., Nansumba, H., Elgahzaly, H. A., Gumbo, H., Smeti, I., Ayed, I. B., Odia, I., Boubaker, I. B. B., Gaaloul, I., Gazy, I., Mudau, I., Ssewanyana, I., Konstantinus, I., Lekana-Douk, J. B., Makangara, J. C. C., Tamfum, J. J. M., Heraud, J. M., Shaffer, J. G., Giandhari, J., Li, J., Yasuda, J., Mends, J. Q., Kiconco, J., Morobe, J. M., Gyapong, J. O., Okolie, J. C., Kayiwa, J. T., Edwards, J. A., Gyamfi, J., Farah, J., Nakaseegu, J., Ngoi, J. M., Namulondo, J., Andeko, J. C., Lutwama, J. J., O’Grady, J., Siddle, K., Adeyemi, K. T., Tumedi, K. A., Said, K. M., Hae-Young, K., Duedu, K. O., Belyamani, L., Fki-Berrajah, L., Singh, L., Martins, L. D. O., Tyers, L., Ramuth, M., Mastouri, M., Aouni, M., el Hefnawi, M., Matsheka, M. I., Kebabonye, M., Diop, M., Turki, M., Paye, M., Nyaga, M. M., Mareka, M., Damaris, M. M., Mburu, M. W., Mpina, M., Nwando, M., Owusu, M., Wiley, M. R., Youtchou, M. T., Ayekaba, M. O., Abouelhoda, M., Seadawy, M. G., Khalifa, M. K., Sekhele, M., Ouadghiri, M., Diagne, M. M., Mwenda, M., Allam, M., Phan, M. V. T., Abid, N., Touil, N., Rujeni, N., Kharrat, N., Ismael, N., Dia, N., Mabunda, N., Hsiao, N. Y., Silochi, N. B., Nsenga, N., Gumede, N., Mulder, N., Ndodo, N., Razanajatovo, N. H., Iguosadolo, N., Judith, O., Kingsley, O. C., Sylvanus, O., Peter, O., Femi, O., Idowu, O., Testimony, O., Chukwuma, O. E., Ogah, O. E., Onwuamah, C. K., Cyril, O., Faye, O., Tomori, O., Ondoa, P., Combe, P., Semanda, P., Oluniyi, P. E., Arnaldo, P., Quashie, P. K., Dussart, P., Bester, P. A., Mbala, P. K., Ayivor-Djanie, R., Njouom, R., Phillips, R. O., Gorman, R., Kingsley, R. A., Carr, R. A. A., El Kabbaj, S., Gargouri, S., Masmoudi, S., Sankhe, S., Lawal, S. B., Kassim, S., Trabelsi, S., Metha, S., Kammoun, S., Lemriss, S., Agwa, S. H. A., Calvignac-Spencer, S., Schaffner, S. F., Doumbia, S., Mandanda, S. M., Aryeetey, S., Ahmed, S. S., Elhamoumi, S., Andriamandimby, S., Tope, S., Lekana-Douki, S., Prosolek, S., Ouangraoua, S., Mundeke, S. A., Rudder, S., Panji, S., Pillay, S., Engelbrecht, S., Nabadda, S., Behillil, S., Budiaki, S. L., van der Werf, S., Mashe, T., Aanniz, T., Mohale, T., Le-Viet, T., Schindler, T., Anyaneji, U. J., Chinedu, U., Ramphal, U., Jessica, U., George, U., Fonseca, V., Enouf, V., Gorova, V., Roshdy, W. H., Ampofo, W. K., Preiser, W., Choga, W. T., Bediako, Y., Naidoo, Y., Butera, Y., de Laurent, Z. R., Sall, A. A., Rebai, A., von Gottberg, A., Kouriba, B., Williamson, C., Bridges, D. J., Chikwe, I., Bhiman, J. N., Mine, M., Cotten, M., Moyo, S., Gaseitsiwe, S., Saasa, N., Sabeti, P. C., Kaleebu, P., Tebeje, Y. K., Tessema, S. K., Happi, C., Nkengasong, J. & de Oliveira, T., Oct 22 2021, In: Science. 374, 6566, p. 423-431 9 p.

    Research output: Contribution to journal › Article › peer-review

    133 Scopus citations

  • Chikungunya viruses containing the A226V mutation detected retrospectively in Cameroon form a new geographical subclade

    Agbodzi, B., Yousseu, F. B. S., Simo, F. B. N., Kumordjie, S., Yeboah, C., Mosore, M. T., Bentil, R. E., Prieto, K., Colston, S. M., Attram, N., Nimo-Paintsil, S., Fox, A. T., Bonney, J. H. K., Ampofo, W., Coatsworth, H. G., Dinglasan, R. R., Wolfe, D. M., Wiley, M. R., Demanou, M. & Letizia, A. G., Dec 2021, In: International Journal of Infectious Diseases. 113, p. 65-73 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    10 Scopus citations

  • Ebola virus transmission initiated by relapse of systemic Ebola virus disease

    Mbala-Kingebeni, P., Pratt, C., Mutafali-Ruffin, M., Pauthner, M. G., Bile, F., Nkuba-Ndaye, A., Black, A., Kinganda-Lusamaki, E., Faye, M., Aziza, A., Diagne, M. M., Mukadi, D., White, B., Hadfield, J., Gangavarapu, K., Bisento, N., Kazadi, D., Nsunda, B., Akonga, M. & Tshiani, O. & 30 others, Misasi, J., Ploquin, A., Epaso, V., Sana-Paka, E., N’kasar, Y. T. T., Mambu, F., Edidi, F., Matondo, M., Bula, J. B., Diallo, B., Keita, M., Belizaire, M. R. D., Fall, I. S., Yam, A., Mulangu, S., Rimion, A. W., Salfati, E., Torkamani, A., Suchard, M. A., Crozier, I., Hensley, L., Rambaut, A., Faye, O., Sall, A., Sullivan, N. J., Bedford, T., Andersen, K. G., Wiley, M. R., Ahuka-Mundeke, S. & Tamfum, J. J. M., Apr 1 2021, In: New England Journal of Medicine. 384, 13, p. 1240-1247 8 p.

    Research output: Contribution to journal › Article › peer-review

    66 Scopus citations

  • First detection of the west nile virus koutango lineage in sandflies in Niger

    Fall, G., Diallo, D., Soumaila, H., Ndiaye, E. H., Lagare, A., Sadio, B. D., Ndione, M. H. D., Wiley, M., Dia, M., Diop, M., Ba, A., Sidikou, F., Ngoy, B. B., Faye, O., Testa, J., Loucoubar, C., Sall, A. A., Diallo, M. & Faye, O., Mar 2021, In: Pathogens. 10, 3, p. 1-12 12 p., 257.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    7 Scopus citations

  • Genome Analysis for Sequence Variants in SARS-CoV-2 among Asymptomatic Individuals in a Long-term Care Facility

    Abdalhamid, B., Iwen, P. C., Wiley, M. R., Pratt, C. B. & Hinrichs, S. H., Apr 9 2021, In: JAMA Network Open. 4, 4

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations

  • Integration of genomic sequencing into the response to the Ebola virus outbreak in Nord Kivu, Democratic Republic of the Congo

    Kinganda-Lusamaki, E., Black, A., Mukadi, D. B., Hadfield, J., Mbala-Kingebeni, P., Pratt, C. B., Aziza, A., Diagne, M. M., White, B., Bisento, N., Nsunda, B., Akonga, M., Faye, M., Faye, O., Edidi-Atani, F., Matondo-Kuamfumu, M., Mambu-Mbika, F., Bulabula, J., Di Paola, N. & Pauthner, M. G. & 9 others, Andersen, K. G., Palacios, G., Delaporte, E., Sall, A. A., Peeters, M., Wiley, M. R., Ahuka-Mundeke, S., Bedford, T. & Tamfum, J. J. M., Apr 2021, In: Nature Medicine. 27, 4, p. 710-716 7 p.

    Research output: Contribution to journal › Article › peer-review

    33 Scopus citations

  • Novel viruses in hard ticks collected in the Republic of Korea unveiled by metagenomic high-throughput sequencing analysis

    Pérez-Sautu, U., Wiley, M. R., Prieto, K., Chitty, J. A., Haddow, A. D., Sánchez-Lockhart, M., Klein, T. A., Kim, H. C., Chong, S. T., Kim, Y. J., Choi, B. S. & Palacios, G. F., Nov 2021, In: Ticks and Tick-borne Diseases. 12, 6, 101820.

    Research output: Contribution to journal › Article › peer-review

    8 Scopus citations

  • Resurgence of Ebola virus in 2021 in Guinea suggests a new paradigm for outbreaks

    Keita, A. K., Koundouno, F. R., Faye, M., Düx, A., Hinzmann, J., Diallo, H., Ayouba, A., Le Marcis, F., Soropogui, B., Ifono, K., Diagne, M. M., Sow, M. S., Bore, J. A., Calvignac-Spencer, S., Vidal, N., Camara, J., Keita, M. B., Renevey, A., Diallo, A. & Soumah, A. K. & 51 others, Millimono, S. L., Mari-Saez, A., Diop, M., Doré, A., Soumah, F. Y., Kourouma, K., Vielle, N. J., Loucoubar, C., Camara, I., Kourouma, K., Annibaldis, G., Bah, A., Thielebein, A., Pahlmann, M., Pullan, S. T., Carroll, M. W., Quick, J., Formenty, P., Legand, A., Pietro, K., Wiley, M. R., Tordo, N., Peyrefitte, C., McCrone, J. T., Rambaut, A., Sidibé, Y., Barry, M. D., Kourouma, M., Saouromou, C. D., Condé, M., Baldé, M., Povogui, M., Keita, S., Diakite, M., Bah, M. S., Sidibe, A., Diakite, D., Sako, F. B., Traore, F. A., Ki-Zerbo, G. A., Lemey, P., Günther, S., Kafetzopoulou, L. E., Sall, A. A., Delaporte, E., Duraffour, S., Faye, O., Leendertz, F. H., Peeters, M., Toure, A. & Magassouba, N. F., Sep 23 2021, In: Nature. 597, 7877, p. 539-543 5 p.

    Research output: Contribution to journal › Article › peer-review

    128 Scopus citations
  • 2020

    Active targeted surveillance to identify sites of emergence of hantavirus

    Kim, W. K., No, J. S., Lee, D., Jung, J., Park, H., Yi, Y., Kim, J. A., Lee, S. H., Kim, Y., Park, S., Cho, S., Lee, G. Y., Song, D. H., Gu, S. H., Park, K., Kim, H. C., Wiley, M. R., Chain, P. S. G., Jeong, S. T. & Klein, T. A. & 2 others, Palacios, G. & Song, J. W., Feb 1 2020, In: Clinical Infectious Diseases. 70, 3, p. 464-473 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    24 Scopus citations

  • Complete coding sequence of Western equine encephalitis virus strain fleming, isolated from a human case

    Burke, C. W., Wiley, M. R., Beitzel, B. F., Gardner, C. L., Huang, Y. J., Piper, A. E., Vanlandingham, D. L., Higgs, S., Palacios, G. & Glass, P. J., Jan 2 2020, In: Microbiology Resource Announcements. 9, 1, e0122319.

    Research output: Contribution to journal › Article › peer-review

    4 Scopus citations

  • Complete genomic sequences of Venezuelan equine encephalitis virus subtype IIID isolates from mosquitoes

    Padilla, S. L., Prieto, K., Dohm, D. J., Turell, M. J., Klein, T. A., Fernández, R., Watts, D. M., Lowen, R. G., Palacios, G. F., Pitt, M. L., Wiley, M. R. & Nasar, F., Jul 1 2020, In: Archives of Virology. 165, 7, p. 1715-1717 3 p.

    Research output: Contribution to journal › Article › peer-review

    1 Scopus citations

  • Modeling mosquito-borne and sexual transmission of zika virus in an enzootic host, the African green monkey

    Haddow, A. D., Perez-Sautu, U., Wiley, M. R., Miller, L. J., Kimmel, A. E., Principe, L. M., Wollen-Roberts, S. E., Shamblin, J. D., Valdez, S. M., Cazares, L. H., Pratt, W. D., Rossi, F. D., Lugo-Roman, L., Bavari, S., Palacios, G. F., Nalca, A., Nasar, F. & Pitt, M. L. M., Jun 2020, In: PLoS neglected tropical diseases. 14, 6, p. 1-23 23 p., e0008107.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations

  • Prospective Cohort Study of Next-Generation Sequencing as a Diagnostic Modality for Unexplained Encephalitis in Children

    Haston, J. C., Rostad, C. A., Jerris, R. C., Milla, S. S., McCracken, C., Pratt, C., Wiley, M., Prieto, K., Palacios, G., Shane, A. L. & McElroy, A. K., 2020, In: Journal of the Pediatric Infectious Diseases Society. 9, 3, p. 326-333 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    32 Scopus citations

  • Shedding of marburg virus in naturally infected egyptian rousette bats, South Africa, 2017

    Pawęska, J. T., Storm, N., Markotter, W., Paola, N. D., Wiley, M. R., Palacios, G. & van Vuren, P. J., Dec 2020, In: Emerging infectious diseases. 26, 12, p. 3051-3055 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    29 Scopus citations
  • 2019

    2018 Ebola virus disease outbreak in Équateur Province, Democratic Republic of the Congo: a retrospective genomic characterisation

    Mbala-Kingebeni, P., Pratt, C. B., Wiley, M. R., Diagne, M. M., Makiala-Mandanda, S., Aziza, A., Di Paola, N., Chitty, J. A., Diop, M., Ayouba, A., Vidal, N., Faye, O., Faye, O., Karhemere, S., Aruna, A., Nsio, J., Mulangu, F., Mukadi, D., Mukadi, P. & Kombe, J. & 20 others, Mulumba, A., Duraffour, S., Likofata, J., Pukuta, E., Caviness, K., Bartlett, M. L., Gonzalez, J., Minogue, T., Sozhamannan, S., Gross, S. M., Schroth, G. P., Kuhn, J. H., Donaldson, E. F., Delaporte, E., Sanchez-Lockhart, M., Peeters, M., Muyembe-Tamfum, J. J., Alpha Sall, A., Palacios, G. & Ahuka-Mundeke, S., Jun 2019, In: The Lancet Infectious Diseases. 19, 6, p. 641-647 7 p.

    Research output: Contribution to journal › Article › peer-review

    31 Scopus citations

  • Comparison of targeted next-generation sequencing for whole-genome sequencing of Hantaan orthohantavirus in Apodemus agrarius lung tissues

    No, J. S., Kim, W. K., Cho, S., Lee, S. H., Kim, J. A., Lee, D., Song, D. H., Gu, S. H., Jeong, S. T., Wiley, M. R., Palacios, G. & Song, J. W., Dec 1 2019, In: Scientific reports. 9, 1, 16631.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    27 Scopus citations

  • Human, nonhuman primate, and bat cells are broadly susceptible to tibrovirus particle cell entry

    Caì, Y., Yú, S., Jangra, R. K., Postnikova, E. N., Wada, J., Tesh, R. B., Whelan, S. P. J., Lauck, M., Wiley, M. R., Finch, C. L., Radoshitzky, S. R., O'Connor, D. H., Palacios, G., Chandran, K., Chiu, C. Y. & Kuhn, J. H., 2019, In: Frontiers in Microbiology. 10, APR, 856.

    Research output: Contribution to journal › Article › peer-review

    9 Scopus citations

  • Lassa virus circulating in Liberia: a retrospective genomic characterisation

    Wiley, M. R., Fakoli, L., Letizia, A. G., Welch, S. R., Ladner, J. T., Prieto, K., Reyes, D., Espy, N., Chitty, J. A., Pratt, C. B., Di Paola, N., Taweh, F., Williams, D., Saindon, J., Davis, W. G., Patel, K., Holland, M., Negrón, D., Ströher, U. & Nichol, S. T. & 8 others, Sozhamannan, S., Rollin, P. E., Dogba, J., Nyenswah, T., Bolay, F., Albariño, C. G., Fallah, M. & Palacios, G., Dec 2019, In: The Lancet Infectious Diseases. 19, 12, p. 1371-1378 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    30 Scopus citations

  • Medical countermeasures during the 2018 Ebola virus disease outbreak in the North Kivu and Ituri Provinces of the Democratic Republic of the Congo: a rapid genomic assessment

    Mbala-Kingebeni, P., Aziza, A., Di Paola, N., Wiley, M. R., Makiala-Mandanda, S., Caviness, K., Pratt, C. B., Ladner, J. T., Kugelman, J. R., Prieto, K., Chitty, J. A., Larson, P. A., Beitzel, B., Ayouba, A., Vidal, N., Karhemere, S., Diop, M., Diagne, M. M., Faye, M. & Faye, O. & 30 others, Aruna, A., Nsio, J., Mulangu, F., Mukadi, D., Mukadi, P., Kombe, J., Mulumba, A., Villabona-Arenas, C. J., Pukuta, E., Gonzalez, J., Bartlett, M. L., Sozhamannan, S., Gross, S. M., Schroth, G. P., Tim, R., Zhao, J. J., Kuhn, J. H., Diallo, B., Yao, M., Fall, I. S., Ndjoloko, B., Mossoko, M., Lacroix, A., Delaporte, E., Sanchez-Lockhart, M., Sall, A. A., Muyembe-Tamfum, J. J., Peeters, M., Palacios, G. & Ahuka-Mundeke, S., Jun 2019, In: The Lancet Infectious Diseases. 19, 6, p. 648-657 10 p.

    Research output: Contribution to journal › Article › peer-review

    62 Scopus citations

  • Phylodynamic analysis of ebola virus disease transmission in sierra leone

    van Vuren, P. J., Ladner, J. T., Grobbelaar, A. A., Wiley, M. R., Lovett, S., Allam, M., Ismail, A., Le Roux, C., Weyer, J., Moolla, N., Storm, N., Kgaladi, J., Sanchez-Lockhart, M., Conteh, O., Palacios, G. & Paweska, J. T., Jan 1 2019, In: Viruses. 11, 1, 71.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3 Scopus citations

  • T-705 induces lethal mutagenesis in Ebola and Marburg populations in macaques

    Espy, N., Nagle, E., Pfeffer, B., Garcia, K., Chitty, A. J., Wiley, M., Sanchez-Lockhart, M., Bavari, S., Warren, T. & Palacios, G., Oct 2019, In: Antiviral Research. 170, 104529.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    14 Scopus citations

  • Target-independent high-throughput sequencing methods provide evidence that already known human viral pathogens play a main role in respiratory infections with unexplained etiology

    Pérez-Sautu, U., Wiley, M. R., Iglesias-Caballero, M., Pozo, F., Prieto, K., Chitty, J. A., García-García, M. L., Calvo, C., Casas, I. & Palacios, G., Jan 1 2019, In: Emerging Microbes and Infections. 8, 1, p. 1054-1065 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6 Scopus citations
  • 2018

    Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors

    Ebola Virus Persistence Study Group, Jan 30 2018, In: Cell Reports. 22, 5, p. 1159-1168 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    36 Scopus citations

  • A novel adenovirus isolated from the Egyptian fruit bat in South Africa is closely related to recent isolates from China

    Jansen Van Vuren, P., Allam, M., Wiley, M. R., Ismail, A., Storm, N., Birkhead, M., Markotter, W., Palacios, G. & Paweska, J. T., Dec 1 2018, In: Scientific reports. 8, 1, 9584.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations

  • Functionality of two origins of replication in vibrio cholerae strains with a single chromosome

    Bruhn, M., Schindler, D., Kemter, F. S., Wiley, M. R., Chase, K., Koroleva, G. I., Palacios, G., Sozhamannan, S. & Waldminghaus, T., Nov 30 2018, In: Frontiers in Microbiology. 9, NOV, 2932.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    18 Scopus citations

  • Genetic characterization of enterovirus A71 circulating in Africa

    Fernandez-Garcia, M. D., Volle, R., Joffret, M. L., Sadeuh-Mba, S. A., Gouandjika-Vasilache, I., Kebe, O., Wiley, M. R., Majumdar, M., Simon-Loriere, E., Sakuntabhai, A., Palacios, G., Martin, J., Delpeyroux, F., Ndiaye, K. & Bessaud, M., Apr 2018, In: Emerging infectious diseases. 24, 4, p. 754-757 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    18 Scopus citations

  • Marburg virus infection in egyptian rousette bats, South Africa, 2013–2014

    Pawęska, J. T., Jansen van Vuren, P., Kemp, A., Storm, N., Grobbelaar, A. A., Wiley, M. R., Palacios, G. & Markotter, W., Jun 2018, In: Emerging infectious diseases. 24, 6, p. 1134-1137 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    43 Scopus citations

  • Multiplex PCR−based next-generation sequencing and global diversity of seoul virus in humans and rats

    Kim, W. K., No, J. S., Lee, S. H., Song, D. H., Lee, D., Kim, J. A., Gu, S. H., Park, S., Jeong, S. T., Kim, H. C., Klein, T. A., Wiley, M. R., Palacios, G. & Song, J. W., Feb 2018, In: Emerging infectious diseases. 24, 2, p. 249-257 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    33 Scopus citations

  • Persistence and intra-host genetic evolution of zika virus infection in symptomatic adults: A special view in the male reproductive system

    Oliveira, D. B. L., Durigon, G. S., Mendes, É. A., Ladner, J. T., Andreata-Santos, R., Araujo, D. B., Botosso, V. F., Paola, N. D., Neto, D. F. L., Cunha, M. P., Braconi, C. T., Alves, R. P. S., Jesus, M. R., Pereira, L. R., Melo, S. R., Mesquita, F. S., Silveira, V. B., Thomazelli, L. M., Favoretto, S. R. & Almonfrey, F. B. & 11 others, Abdulkader, R. C. R. M., Gabrili, J. M., Tambourgi, D. V., Oliveira, S. F., Prieto, K., Wiley, M. R., Ferreira, L. C. S., Silva, M. V., Palacios, G. F., Zanotto, P. M. A. & Durigon, E. L., Nov 7 2018, In: Viruses. 10, 11, 615.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    33 Scopus citations

  • Persistence of Ebola virus after the end of widespread transmission in Liberia: an outbreak report

    Dokubo, E. K., Wendland, A., Mate, S. E., Ladner, J. T., Hamblion, E. L., Raftery, P., Blackley, D. J., Laney, A. S., Mahmoud, N., Wayne-Davies, G., Hensley, L., Stavale, E., Fakoli, L., Gregory, C., Chen, T. H., Koryon, A., Roth Allen, D., Mann, J., Hickey, A. & Saindon, J. & 16 others, Badini, M., Baller, A., Clement, P., Bolay, F., Wapoe, Y., Wiley, M. R., Logue, J., Dighero-Kemp, B., Higgs, E., Gasasira, A., Williams, D. E., Dahn, B., Kateh, F., Nyenswah, T., Palacios, G. & Fallah, M. P., Sep 2018, In: The Lancet Infectious Diseases. 18, 9, p. 1015-1024 10 p.

    Research output: Contribution to journal › Article › peer-review

    40 Scopus citations

  • Ribavirin Had Demonstrable Effects on the Crimean-Congo Hemorrhagic Fever Virus (CCHFV) Population and Load in a Patient with CCHF Infection

    Espy, N., Pérez-Sautu, U., De Arellano, E. R., Negredo, A., Wiley, M. R., Bavari, S., Menendez, M. D., Sánchez-Seco, M. P. & Palacios, G., May 25 2018, In: Journal of Infectious Diseases. 217, 12, p. 1952-1956 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    22 Scopus citations

  • Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018

    Maes, P., Alkhovsky, S. V., Bào, Y., Beer, M., Birkhead, M., Briese, T., Buchmeier, M. J., Calisher, C. H., Charrel, R. N., Choi, I. R., Clegg, C. S., de la Torre, J. C., Delwart, E., DeRisi, J. L., Di Bello, P. L., Di Serio, F., Digiaro, M., Dolja, V. V., Drosten, C. & Druciarek, T. Z. & 79 others, Du, J., Ebihara, H., Elbeaino, T., Gergerich, R. C., Gillis, A. N., Gonzalez, J. P. J., Haenni, A. L., Hepojoki, J., Hetzel, U., Hồ, T., Hóng, N., Jain, R. K., Jansen van Vuren, P., Jin, Q., Jonson, M. G., Junglen, S., Keller, K. E., Kemp, A., Kipar, A., Kondov, N. O., Koonin, E. V., Kormelink, R., Korzyukov, Y., Krupovic, M., Lambert, A. J., Laney, A. G., LeBreton, M., Lukashevich, I. S., Marklewitz, M., Markotter, W., Martelli, G. P., Martin, R. R., Mielke-Ehret, N., Mühlbach, H. P., Navarro, B., Ng, T. F. F., Nunes, M. R. T., Palacios, G., Pawęska, J. T., Peters, C. J., Plyusnin, A., Radoshitzky, S. R., Romanowski, V., Salmenperä, P., Salvato, M. S., Sanfaçon, H., Sasaya, T., Schmaljohn, C., Schneider, B. S., Shirako, Y., Siddell, S., Sironen, T. A., Stenglein, M. D., Storm, N., Sudini, H., Tesh, R. B., Tzanetakis, I. E., Uppala, M., Vapalahti, O., Vasilakis, N., Walker, P. J., Wáng, G., Wáng, L., Wáng, Y., Wèi, T., Wiley, M. R., Wolf, Y. I., Wolfe, N. D., Wú, Z., Xú, W., Yang, L., Yāng, Z., Yeh, S. D., Zhāng, Y. Z., Zhèng, Y., Zhou, X., Zhū, C., Zirkel, F. & Kuhn, J. H., Aug 1 2018, In: Archives of Virology. 163, 8, p. 2295-2310 16 p.

    Research output: Contribution to journal › Article › peer-review

    159 Scopus citations

  • Taxonomy of the order Mononegavirales: update 2018

    Amarasinghe, G. K., Aréchiga Ceballos, N. G., Banyard, A. C., Basler, C. F., Bavari, S., Bennett, A. J., Blasdell, K. R., Briese, T., Bukreyev, A., Caì, Y., Calisher, C. H., Campos Lawson, C., Chandran, K., Chapman, C. A., Chiu, C. Y., Choi, K. S., Collins, P. L., Dietzgen, R. G., Dolja, V. V. & Dolnik, O. & 71 others, Domier, L. L., Dürrwald, R., Dye, J. M., Easton, A. J., Ebihara, H., Echevarría, J. E., Fooks, A. R., Formenty, P. B. H., Fouchier, R. A. M., Freuling, C. M., Ghedin, E., Goldberg, T. L., Hewson, R., Horie, M., Hyndman, T. H., Jiāng, D., Kityo, R., Kobinger, G. P., Kondō, H., Koonin, E. V., Krupovic, M., Kurath, G., Lamb, R. A., Lee, B., Leroy, E. M., Maes, P., Maisner, A., Marston, D. A., Mor, S. K., Müller, T., Mühlberger, E., Ramírez, V. M. N., Netesov, S. V., Ng, T. F. F., Nowotny, N., Palacios, G., Patterson, J. L., Pawęska, J. T., Payne, S. L., Prieto, K., Rima, B. K., Rota, P., Rubbenstroth, D., Schwemmle, M., Siddell, S., Smither, S. J., Song, Q., Song, T., Stenglein, M. D., Stone, D. M., Takada, A., Tesh, R. B., Thomazelli, L. M., Tomonaga, K., Tordo, N., Towner, J. S., Vasilakis, N., Vázquez-Morón, S., Verdugo, C., Volchkov, V. E., Wahl, V., Walker, P. J., Wang, D., Wang, L. F., Wellehan, J. F. X., Wiley, M. R., Whitfield, A. E., Wolf, Y. I., Yè, G., Zhāng, Y. Z. & Kuhn, J. H., Aug 1 2018, In: Archives of Virology. 163, 8, p. 2283-2294 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    152 Scopus citations
  • 2017

    Beatrice Hill virus represents a novel species in the genus Tibrovirus (Mononegavirales: Rhabdoviridae)

    Wiley, M. R., Prieto, K., Blasdell, K. R., Caì, Y., Lawson, C. C., Walker, P. J., Chiu, C. Y., Palacios, G. & Kuhn, J. H., 2017, In: Genome Announcements. 5, 4, e01485-16.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3 Scopus citations

  • Error baseline rates of five sample preparation methods used to characterize RNA virus populations

    Kugelman, J. R., Wiley, M. R., Nagle, E. R., Reyes, D., Pfeffer, B. P., Kuhn, J. H., Sanchez-Lockhart, M. & Palacios, G. F., Feb 2017, In: PloS one. 12, 2, e0171333.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    19 Scopus citations

  • First report of naturally infected Aedes aegypti with chikungunya virus genotype ECSA in the Americas

    Costa-da-Silva, A. L., Ioshino, R. S., Petersen, V., Lima, A. F., Cunha, M. D. P., Wiley, M. R., Ladner, J. T., Prieto, K., Palacios, G., Costa, D. D., Suesdek, L., Zanotto, P. M. D. A. & Capurro, M. L., Jun 14 2017, In: PLoS neglected tropical diseases. 11, 6, e0005630.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    63 Scopus citations

  • Genomic epidemiology reveals multiple introductions of Zika virus into the United States

    Grubaugh, N. D., Ladner, J. T., Kraemer, M. U. G., Dudas, G., Tan, A. L., Gangavarapu, K., Wiley, M. R., White, S., Thézé, J., Magnani, D. M., Prieto, K., Reyes, D., Bingham, A. M., Paul, L. M., Robles-Sikisaka, R., Oliveira, G., Pronty, D., Barcellona, C. M., Metsky, H. C. & Baniecki, M. L. & 49 others, Barnes, K. G., Chak, B., Freije, C. A., Gladden-Young, A., Gnirke, A., Luo, C., MacInnis, B., Matranga, C. B., Park, D. J., Qu, J., Schaffner, S. F., Tomkins-Tinch, C., West, K. L., Winnicki, S. M., Wohl, S., Yozwiak, N. L., Quick, J., Fauver, J. R., Khan, K., Brent, S. E., Reiner, R. C., Lichtenberger, P. N., Ricciardi, M. J., Bailey, V. K., Watkins, D. I., Cone, M. R., Kopp, E. W., Hogan, K. N., Cannons, A. C., Jean, R., Monaghan, A. J., Garry, R. F., Loman, N. J., Faria, N. R., Porcelli, M. C., Vasquez, C., Nagle, E. R., Cummings, D. A. T., Stanek, D., Rambaut, A., Sanchez-Lockhart, M., Sabeti, P. C., Gillis, L. D., Michael, S. F., Bedford, T., Pybus, O. G., Isern, S., Palacios, G. & Andersen, K. G., Jun 15 2017, In: Nature. 546, 7658, p. 401-405 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    262 Scopus citations

  • High infection rates for adult macaques after intravaginal or intrarectal inoculation with zika virus

    Haddow, A. D., Nalca, A., Rossi, F. D., Miller, L. J., Wiley, M. R., Perez-Sautu, U., Washington, S. C., Norris, S. L., Wollen-Roberts, S. E., Shamblin, J. D., Kimmel, A. E., Bloomfield, H. A., Valdez, S. M., Sprague, T. R., Principe, L. M., Bellanca, S. A., Cinkovich, S. S., Lugo-Roman, L., Cazares, L. H. & Pratt, W. D. & 4 others, Palacios, G. F., Bavari, S., Pitt, M. L. & Nasar, F., Aug 2017, In: Emerging infectious diseases. 23, 8, p. 1274-1281 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    69 Scopus citations

  • Isolation of a novel orthobunyavirus from bat flies (Eucampsipoda africana)

    Jansen Van Vuren, P., Wiley, M. R., Palacios, G., Storm, N., Markotter, W., Birkhead, M., Kemp, A. & Paweska, J. T., May 2017, In: Journal of General Virology. 98, 5, p. 935-945 11 p., 000753.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    32 Scopus citations
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