Simon Sherman, PhD

  • 3096 Citations
  • 27 h-Index
1984 …2019

Research output per year

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Research Output

Article

New computational models for electrostatics of macromolecules in solvents

Dai, J., Tsukerman, I., Rubinstein, A. & Sherman, S., Apr 2007, In : IEEE Transactions on Magnetics. 43, 4, p. 1217-1220 4 p.

Research output: Contribution to journalArticle

12 Scopus citations

Nitrated α-synuclein immunity accelerates degeneration of nigral dopaminergic neurons

Benner, E. J., Banerjee, R., Reynolds, A. D., Sherman, S., Pisarev, V. M., Tsiperson, V., Nemachek, C., Ciborowski, P., Przedborski, S., Mosley, R. L. & Gendelman, H. E., Jan 2 2008, In : PloS one. 3, 1, e1376.

Research output: Contribution to journalArticle

214 Scopus citations

NMR analysis of a potent decapeptide agonist of human C5a anaphylatoxin

Vogen, S. M., Prakash, O., Kirnarsky, L., Sanderson, S. D. & Sherman, S. A., 1998, In : Journal of Peptide Research. 51, 3, p. 226-234 9 p.

Research output: Contribution to journalArticle

7 Scopus citations

NMR-based structural studies of the glycosylated MUC1 tandem repeat peptide

Suryanarayanan, G., Keifer, P. A., Wang, G., Kinarsky, L., Hollingsworth, M. A. & Sherman, S., Mar 2004, In : International journal of molecular sciences. 5, 3, p. 84-92 9 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Opredelenie i sravnitel'nyǐ analiz konformatsiǐ ostova belkovykh molekul bych'ego pankreaticheskogo ingibitora tripsina i ingibitorov tripsina E i K na osnove dannykh dvumernoǐ 1H-IaMR-spektroskopii.

Translated title of the contribution: Determination and comparative analysis of the conformation of bovine pancreatic trypsin inhibitor and trypsin inhibitors E and K from the data of two-dimensional 1H-NMR spectroscopySherman, S. A. & Andrianov, A. M., Sep 1985, In : Molekuliarnaia biologiia. 19, 5, p. 1301-1309 9 p.

Research output: Contribution to journalArticle

7 Scopus citations

Opredelenie konformatsii gliukagona v lipidnom okruzhenii po dannym dvumernoǐ spektroskopii iadernogo éffekta Overkhauzera.

Translated title of the contribution: Determination of glucagon conformation in lipid environment based on the data of two-dimensional Overhauser effect spectroscopyAndrianov, A. M., Sherman, S. A. & Akhrem, A. A., 1990, In : Doklady Akademii nauk SSSR. 310, 3, p. 724-727 4 p.

Research output: Contribution to journalArticle

Ot ustanovlenii konformatsiǐ aminokislotnykh ostatkov k rekonstruktsii prostranstvennoǐ struktury belkov (po dannym spektroskopii iadernogo éffekta Overkhauzera).

Translated title of the contribution: From determination of amino acid residue conformation to reconstruction of the spatial structure of proteins (from the data of nuclear Overhauser enhancement spectroscopySherman, S. A. & Andrianov, A. M., Sep 1989, In : Molekulyarnaya Biologiya. 23, 5, p. 1234-1242 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

PCCR: Pancreatic cancer collaborative registry

Sherman, S., Shats, O., Ketcham, M. A., Anderson, M. A., Whitcomb, D. C., Lynch, H. T., Ghiorzo, P., Rubinstein, W. S., Sasson, A. R., Grizzle, W. E., Haynatzki, G., Feng, J., Sherman, A., Kinarsky, L. & Brand, R. E., 2011, In : Cancer Informatics. 10, p. 83-91 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

Prognostic estimator of survival for patients with localized and extended pancreatic ductal adenocarcinoma

Gleason, M. X., Mdzinarishvili, T., Are, C., Sasson, A., Sherman, A., Shats, O. & Sherman, S., 2013, In : Cancer Informatics. 12, p. 103-114 12 p.

Research output: Contribution to journalArticle

10 Scopus citations

Prognostic Estimator of Survival for Patients with Localized and Extended Pancreatic Ductal Adenocarcinoma

Gleason, M. X., Mdzinarishvili, T., Are, C., Sasson, A., Sherman, A., Shats, O. & Sherman, S., Jan 1 2013, In : Cancer Informatics. 12

Research output: Contribution to journalArticle

Open Access

Role of disulphide bond formation in folding, secretion, and assembly of human chorionic gonadotropin subunits

Bedows, E., Darling, R. J., Wilken, J. A. & Sherman, S. A., 2002, In : Indian journal of experimental biology. 40, 4, p. 467-476 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

SECOS: Sequence-conformation-structure database for amino acid residues in proteins

Shats, O., Vaisman, I. I., Shats, A. & Sherman, S., Jun 1999, In : Bioinformatics. 15, 6, p. 525-526 2 p.

Research output: Contribution to journalArticle

Selenoprotein oxidoreductase with specificity for thioredoxin and glutathione systems

Sun, Q. A., Kirnarsky, L., Sherman, S. & Gladyshev, V. N., Mar 27 2001, In : Proceedings of the National Academy of Sciences of the United States of America. 98, 7, p. 3673-3678 6 p.

Research output: Contribution to journalArticle

212 Scopus citations

Sequence-variant repeats of MUC1 show higher conformational flexibility, are less densely O-glycosylated and induce differential B lymphocyte responses

von Mensdorff-Pouilly, S., Kinarsky, L., Engelmann, K., Baldus, S. E., Verheijen, R. H., Hollingsworth, M. A., Pisarev, V., Sherman, S. & Hanisch, F. G., Aug 2005, In : Glycobiology. 15, 8, p. 735-746 12 p.

Research output: Contribution to journalArticle

27 Scopus citations

Stabilization of vasoactive intestinal peptide by lipids

Gololobov, G., Noda, Y., Sherman, S., Rubinstein, I., Baranowska-Kortylewicz, J. & Paul, S., 1998, In : Journal of Pharmacology and Experimental Therapeutics. 285, 2, p. 753-758 6 p.

Research output: Contribution to journalArticle

47 Scopus citations

Structural analysis of peptide substrates for mucin-type O- glycosylation

Kirnarsky, L., Nomoto, M., Ikematsu, Y., Hassan, H., Bennett, E. P., Cerny, R. L., Clausen, H., Hollingsworth, M. A. & Sherman, S., Sep 15 1998, In : Biochemistry. 37, 37, p. 12811-12817 7 p.

Research output: Contribution to journalArticle

33 Scopus citations

Structural effects of O-glycosylation on a 15-residue peptide from the mucin (MUC1) core protein

Kirnarsky, L., Prakash, O., Vogen, S. M., Nomoto, M., Hollingsworth, M. A. & Sherman, S., Oct 3 2000, In : Biochemistry. 39, 39, p. 12076-12082 7 p.

Research output: Contribution to journalArticle

62 Scopus citations

Suitability of Stratagene reference RNA for analysis of lymphoid tissues

Dybkær, K., Zhou, G., Iqbal, J., Kelly, D., Xiao, L., Sherman, S., D'Amore, F. & Chan, W. C., Sep 2004, In : BioTechniques. 37, 3, p. 470-474 5 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

T cells recognize PD(N/T)R motif common in a variable number of tandem repeat and degenerate repeat sequences of MUC1

Pisarev, V. M., Kinarsky, L., Caffrey, T., Hanisch, F. G., Sanderson, S., Hollingsworth, M. A. & Sherman, S., Feb 2005, In : International Immunopharmacology. 5, 2, p. 315-330 16 p.

Research output: Contribution to journalArticle

18 Scopus citations

The role of the SEA (sea urchin sperm protein, enterokinase and agrin) module in cleavage of membrane-tethered mucins

Palmai-Pallag, T., Khodabukus, N., Kinarsky, L., Leir, S. H., Sherman, S., Hollingsworth, M. A. & Harris, A., Jun 2005, In : FEBS Journal. 272, 11, p. 2901-2911 11 p.

Research output: Contribution to journalArticle

39 Scopus citations

Thyroid cancer and tumor collaborative registry (TCCR)

Shats, O., Goldner, W., Feng, J., Sherman, A., Smith, R. B. & Sherman, S., 2016, In : Cancer Informatics. 15, p. 73-79 7 p.

Research output: Contribution to journalArticle

3 Scopus citations

Tumor-infiltrating myeloid cells induce tumor cell resistance to cytotoxic T cells in mice

Lu, T., Ramakrishnan, R., Altiok, S., Youn, J. I., Cheng, P., Celis, E., Pisarev, V., Sherman, S., Sporn, M. B. & Gabrilovich, D., Oct 3 2011, In : Journal of Clinical Investigation. 121, 10, p. 4015-4029 15 p.

Research output: Contribution to journalArticle

192 Scopus citations

Two PALB2 germline mutations found in both BRCA1+ and BRCAx familial breast cancer

Downs, B., Kim, Y. C., Xiao, F., Snyder, C., Chen, P., Fleissner, E. A., Becirovic, D., Wen, H., Sherman, S., Cowan, K. H., Lynch, H. T. & Wang, S. M., May 1 2015, In : Breast Cancer Research and Treatment. 151, 1, p. 219-224 6 p.

Research output: Contribution to journalArticle

2 Scopus citations

Ustanovlenie prostranstvennoǐ struktury apamina v rastvore. Konformatsionyǐ analiz po dannym dvumernoǐ spektroskopii iadernogo éffekta Overkhauzera.

Translated title of the contribution: Determination of apamin conformation in a solution. Conformation analysis of the data of two-dimensional nuclear Overhauser enhancement spectroscopySherman, S. A., Andrianov, A. M. & Akhrem, A. A., 1987, In : Doklady Akademii nauk SSSR. 293, 2, p. 472-476 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

Vzaimosviaz' spektral'nykh parametrov IaMR s konformatsionnymi kharakteristikami ostova aminokislotnykh ostatkov. Analiz élementov vtorichnoǐ struktury belkov.

Translated title of the contribution: Relation between the spectral NMR parameters and conformation characteristics of the amino acid residue backbone. Analysis of elements of the secondary structure of proteinsSherman, S. A. & Andrianov, A. M., Nov 1987, In : Molekulyarnaya Biologiya. 21, 6, p. 1573-1581 9 p.

Research output: Contribution to journalArticle

4 Scopus citations

Web tool for estimating the cancer hazard rates in aging

Mdzinarishvili, T., Sherman, A., Shats, O. & Sherman, S., Dec 17 2014, In : Cancer Informatics. 13, p. 197-205 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Weibull-like model of cancer development in aging

Mdzinarishvili, T. & Sherman, S., 2010, In : Cancer Informatics. 9, p. 179-188 10 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

β-Hairpin stabilization in a 28-residue peptide derived from the β- subunit sequence of human chorionic gonadotropin hormone

Silva, R. A. G. D., Sherman, S. A. & Keiderling, T. A., Oct 5 1999, In : Biopolymers. 50, 4, p. 413-423 11 p.

Research output: Contribution to journalArticle

12 Scopus citations
Conference article

MicroMultitest: Ranking differentially-expressed genes in microarray data

Xiao, L., Cao, L., Iqbal, J., Zhou, G., Chan, W. C. & Sherman, S., 2005, In : Proceedings of the Annual Hawaii International Conference on System Sciences. p. 279 1 p.

Research output: Contribution to journalConference article

Conference contribution

A comparison of statistical approaches for genetic anticipation with application to pancreatic cancer

Havnatzki, G. R., Brand, R. E., Haynatzka, V. R., Lynch, H. T. & Sherman, S. A., 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. 4076630. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Grid-layout visualization method in the microarray data analysis interactive graphics toolkit

Xiao, L., Shats, O. & Sherman, S., 2003, Proceedings of the 36th Annual Hawaii International Conference on System Sciences, HICSS 2003. Sprague, R. H. (ed.). Institute of Electrical and Electronics Engineers Inc., 1174805. (Proceedings of the 36th Annual Hawaii International Conference on System Sciences, HICSS 2003).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Identification of genes important in predicting the overall survival in patients with follicular lymphoma

Xiao, L., Fu, K., Iqbal, J., Chan, W. C. & Sherman, S., 2005, Proceedings of the 2005 International Conference on Data Mining, DMIN'05. p. 181-186 6 p. (Proceedings of the 2005 International Conference on Data Mining, DMIN'05).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Influence of time period and birth cohort effects on age-specific incidence rates of pancreatic and kidney cancer

Mdzinarishvili, T., Gleason, M. X. & Sherman, S., 2010, Proceedings of the 43rd Annual Hawaii International Conference on System Sciences, HICSS-43. 5428372. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Introduction to advanced bioinformatics tools for translational research minitrack

Ali, H. H. & Sherman, S., 2008, Proceedings of the 41st Annual Hawaii International Conference on System Sciences 2008, HICSS. 4438931. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Introduction to Mini-track: Advanced data management tools for biomedical informatics

Ali, H. H. & Sherman, S., 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. IEEE Computer Society, p. 127 1 p. 4076626. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

New computational models for electrostatics of macromolecules in solvents

Dai, J., Tsukerman, I., Rubinstein, A. & Sherman, S., 2006, 12th Biennial IEEE Conference on Electromagnetic Field Computation, CEFC 2006. IEEE Computer Society, p. 362 1 p. 1633152. (12th Biennial IEEE Conference on Electromagnetic Field Computation, CEFC 2006).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

PCCR study for Italy: Meat consumption, preparation, and meat-derived carcinogens on the risk of sporadic pancreatic cancer

Haynatzki, G., Haynatzka, V., Ghiorzo, P. & Sherman, S., 2009, Proceedings of the 42nd Annual Hawaii International Conference on System Sciences, HICSS. 4755577. (Proceedings of the 42nd Annual Hawaii International Conference on System Sciences, HICSS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
Letter

Comment re: Cancer incidence falls for oldest

Mdzinarishvili, T., Gleason, M. X. & Sherman, S., Jan 1 2009, In : Cancer Research. 69, 1, p. 379 1 p.

Research output: Contribution to journalLetter

1 Scopus citations
Review article

Derivation of locally accurate spatial protein structure from NMR data

Sherman, S. A. & Johnson, M. E., 1993, In : Progress in Biophysics and Molecular Biology. 59, 3, p. 285-339 55 p.

Research output: Contribution to journalReview article

34 Scopus citations

Identification of O-glycosylated decapeptides within the MUC1 repeat domain as potential MHC class I (A2) binding epitopes

Ninkovic, T., Kinarsky, L., Engelmann, K., Pisarev, V., Sherman, S., Finn, O. J. & Hanisch, F. G., Nov 2009, In : Molecular Immunology. 47, 1, p. 131-140 10 p.

Research output: Contribution to journalReview article

33 Scopus citations

Nanoimaging for protein misfolding and related diseases

Lyubchenko, Y. L., Sherman, S., Shlyakhtenko, L. S. & Uversky, V. N., Sep 1 2006, In : Journal of Cellular Biochemistry. 99, 1, p. 52-70 19 p.

Research output: Contribution to journalReview article

38 Scopus citations

Polymer genomics

Kabanov, A. V., Batrakova, E. V., Sherman, S. & Alakhov, V. Y., 2006, In : Advances in Polymer Science. 193, 1, p. 173-198 26 p.

Research output: Contribution to journalReview article

10 Scopus citations

Protein folding in the endoplasmic reticulum: Lessons from the human chorionic gonadotropin β subunit

Ruddon, R. W., Sherman, S. A. & Bedows, E., Aug 1996, In : Protein Science. 5, 8, p. 1443-1452 10 p.

Research output: Contribution to journalReview article

66 Scopus citations