A comparison of computational approaches in the molecular identification of pathogenic organisms

Dhundy R. Bastola; Scott McGrath; Sanjukta Bhowmick; Ishwor Thapa

doi:10.1109/HISB.2012.23

A comparison of computational approaches in the molecular identification of pathogenic organisms

Dhundy R. Bastola, Scott McGrath, Sanjukta Bhowmick, Ishwor Thapa

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

Molecular based identification of pathogenic organism is becoming a routine procedure in many diagnostic laboratories. Ribosomal RNA is particularly the most popular choice for this purpose. Although, other targets such as 'cytochrome b', 'rpoB' and 'actin' are highly effective, they have not been extensively used. This could be due to the lack of effective data collection method. We used sequence based exhaustive search of public sequence database to obtain all target sequences. This approach is currently being extended to collect such molecular targets for Nocardia and other slow growing medically important organism.

Original language	English (US)
Title of host publication	Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012
Pages	73
Number of pages	1
DOIs	https://doi.org/10.1109/HISB.2012.23
State	Published - 2012
Event	2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012 - San Diego, CA, United States Duration: Sep 27 2012 → Sep 28 2012

Publication series

Name	Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012

Conference

Conference	2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012
Country/Territory	United States
City	San Diego, CA
Period	9/27/12 → 9/28/12

ASJC Scopus subject areas

Biomedical Engineering
Health Informatics
Health Information Management

Access to Document

10.1109/HISB.2012.23

Cite this

Bastola, D. R., McGrath, S., Bhowmick, S., & Thapa, I. (2012). A comparison of computational approaches in the molecular identification of pathogenic organisms. In Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012 (pp. 73). Article 6366198 (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012). https://doi.org/10.1109/HISB.2012.23

A comparison of computational approaches in the molecular identification of pathogenic organisms. / Bastola, Dhundy R.; McGrath, Scott; Bhowmick, Sanjukta et al.
Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. 2012. p. 73 6366198 (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Bastola, DR, McGrath, S, Bhowmick, S & Thapa, I 2012, A comparison of computational approaches in the molecular identification of pathogenic organisms. in Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012., 6366198, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012, pp. 73, 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012, San Diego, CA, United States, 9/27/12. https://doi.org/10.1109/HISB.2012.23

Bastola DR, McGrath S, Bhowmick S, Thapa I. A comparison of computational approaches in the molecular identification of pathogenic organisms. In Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. 2012. p. 73. 6366198. (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012). doi: 10.1109/HISB.2012.23

Bastola, Dhundy R. ; McGrath, Scott ; Bhowmick, Sanjukta et al. / A comparison of computational approaches in the molecular identification of pathogenic organisms. Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. 2012. pp. 73 (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012).

@inproceedings{33a968f1fe2f4d4a902b38fd21313008,

title = "A comparison of computational approaches in the molecular identification of pathogenic organisms",

abstract = "Molecular based identification of pathogenic organism is becoming a routine procedure in many diagnostic laboratories. Ribosomal RNA is particularly the most popular choice for this purpose. Although, other targets such as 'cytochrome b', 'rpoB' and 'actin' are highly effective, they have not been extensively used. This could be due to the lack of effective data collection method. We used sequence based exhaustive search of public sequence database to obtain all target sequences. This approach is currently being extended to collect such molecular targets for Nocardia and other slow growing medically important organism.",

author = "Bastola, {Dhundy R.} and Scott McGrath and Sanjukta Bhowmick and Ishwor Thapa",

year = "2012",

doi = "10.1109/HISB.2012.23",

language = "English (US)",

isbn = "9780769549217",

series = "Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012",

pages = "73",

booktitle = "Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012",

note = "2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012 ; Conference date: 27-09-2012 Through 28-09-2012",

}

TY - GEN

T1 - A comparison of computational approaches in the molecular identification of pathogenic organisms

AU - Bastola, Dhundy R.

AU - McGrath, Scott

AU - Bhowmick, Sanjukta

AU - Thapa, Ishwor

PY - 2012

Y1 - 2012

N2 - Molecular based identification of pathogenic organism is becoming a routine procedure in many diagnostic laboratories. Ribosomal RNA is particularly the most popular choice for this purpose. Although, other targets such as 'cytochrome b', 'rpoB' and 'actin' are highly effective, they have not been extensively used. This could be due to the lack of effective data collection method. We used sequence based exhaustive search of public sequence database to obtain all target sequences. This approach is currently being extended to collect such molecular targets for Nocardia and other slow growing medically important organism.

AB - Molecular based identification of pathogenic organism is becoming a routine procedure in many diagnostic laboratories. Ribosomal RNA is particularly the most popular choice for this purpose. Although, other targets such as 'cytochrome b', 'rpoB' and 'actin' are highly effective, they have not been extensively used. This could be due to the lack of effective data collection method. We used sequence based exhaustive search of public sequence database to obtain all target sequences. This approach is currently being extended to collect such molecular targets for Nocardia and other slow growing medically important organism.

UR - http://www.scopus.com/inward/record.url?scp=84871973036&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84871973036&partnerID=8YFLogxK

U2 - 10.1109/HISB.2012.23

DO - 10.1109/HISB.2012.23

M3 - Conference contribution

AN - SCOPUS:84871973036

SN - 9780769549217

T3 - Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012

SP - 73

BT - Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012

T2 - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012

Y2 - 27 September 2012 through 28 September 2012

ER -

A comparison of computational approaches in the molecular identification of pathogenic organisms

Abstract

Publication series

Conference

ASJC Scopus subject areas

Access to Document

Other files and links

Fingerprint

Cite this