TY - JOUR
T1 - Biomacromolecule-Assisted Screening for Reaction Discovery and Catalyst Optimization
AU - Ramos De Dios, Stephany M.
AU - Tiwari, Virendra K.
AU - McCune, Christopher D.
AU - Dhokale, Ranjeet A.
AU - Berkowitz, David B.
N1 - Funding Information:
Innovation of in vitro DNA-encoded libraries has been an enabling force for the reaction discovery process, increasing the probability of evaluating successful combinations of potential reactions among substrate library members. An early example from Liu and co-workers relied on DNA to direct chemical reactions by synthesizing reactants of interest bound to complementary DNA strands. This method was supported by solution-phase DNA-templated synthesis containing hairpin and end-of-helix templates. Both templates were covalently attached at the 5′-end to an electrophilic maleimide group and at the 3′-end to a nucleophilic thiolate group, thereby yielding thioether products ( and ). Extensive work in this area, using end-of-helix templation, demonstrated the ability to orchestrate sequence-specific DNA-templated reactions with examples including S2 substitutions, additions to α,β-unsaturated carbonyl systems, and additions to vinyl sulfones with nucleophiles such as thiols and amines. N
Publisher Copyright:
© 2022 American Chemical Society.
PY - 2022/8/24
Y1 - 2022/8/24
N2 - Reaction discovery and catalyst screening lie at the heart of synthetic organic chemistry. While there are efforts at de novo catalyst design using computation/artificial intelligence, at its core, synthetic chemistry is an experimental science. This review overviews biomacromolecule-assisted screening methods and the follow-on elaboration of chemistry so discovered. All three types of biomacromolecules discussed─enzymes, antibodies, and nucleic acids─have been used as "sensors"to provide a readout on product chirality exploiting their native chirality. Enzymatic sensing methods yield both UV-spectrophotometric and visible, colorimetric readouts. Antibody sensors provide direct fluorescent readout upon analyte binding in some cases or provide for cat-ELISA (Enzyme-Linked ImmunoSorbent Assay)-type readouts. DNA biomacromolecule-assisted screening allows for templation to facilitate reaction discovery, driving bimolecular reactions into a pseudo-unimolecular format. In addition, the ability to use DNA-encoded libraries permits the barcoding of reactants. All three types of biomacromolecule-based screens afford high sensitivity and selectivity. Among the chemical transformations discovered by enzymatic screening methods are the first Ni(0)-mediated asymmetric allylic amination and a new thiocyanopalladation/carbocyclization transformation in which both C-SCN and C-C bonds are fashioned sequentially. Cat-ELISA screening has identified new classes of sydnone-alkyne cycloadditions, and DNA-encoded screening has been exploited to uncover interesting oxidative Pd-mediated amido-alkyne/alkene coupling reactions.
AB - Reaction discovery and catalyst screening lie at the heart of synthetic organic chemistry. While there are efforts at de novo catalyst design using computation/artificial intelligence, at its core, synthetic chemistry is an experimental science. This review overviews biomacromolecule-assisted screening methods and the follow-on elaboration of chemistry so discovered. All three types of biomacromolecules discussed─enzymes, antibodies, and nucleic acids─have been used as "sensors"to provide a readout on product chirality exploiting their native chirality. Enzymatic sensing methods yield both UV-spectrophotometric and visible, colorimetric readouts. Antibody sensors provide direct fluorescent readout upon analyte binding in some cases or provide for cat-ELISA (Enzyme-Linked ImmunoSorbent Assay)-type readouts. DNA biomacromolecule-assisted screening allows for templation to facilitate reaction discovery, driving bimolecular reactions into a pseudo-unimolecular format. In addition, the ability to use DNA-encoded libraries permits the barcoding of reactants. All three types of biomacromolecule-based screens afford high sensitivity and selectivity. Among the chemical transformations discovered by enzymatic screening methods are the first Ni(0)-mediated asymmetric allylic amination and a new thiocyanopalladation/carbocyclization transformation in which both C-SCN and C-C bonds are fashioned sequentially. Cat-ELISA screening has identified new classes of sydnone-alkyne cycloadditions, and DNA-encoded screening has been exploited to uncover interesting oxidative Pd-mediated amido-alkyne/alkene coupling reactions.
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U2 - 10.1021/acs.chemrev.2c00213
DO - 10.1021/acs.chemrev.2c00213
M3 - Review article
C2 - 35904776
AN - SCOPUS:85136126474
SN - 0009-2665
VL - 122
SP - 13800
EP - 13880
JO - Chemical Reviews
JF - Chemical Reviews
IS - 16
ER -