TY - JOUR
T1 - Computational Models for Trapping Ebola Virus Using Engineered Bacteria
AU - Martins, Daniel P.
AU - Barros, Michael Taynnan
AU - Pierobon, Massimiliano
AU - Kandhavelu, Meenakshisundaram
AU - Lio, Pietro
AU - Balasubramaniam, Sasitharan
N1 - Publisher Copyright:
© 2004-2012 IEEE.
PY - 2018/11/1
Y1 - 2018/11/1
N2 - The outbreak of the Ebola virus in recent years has resulted in numerous research initiatives to seek new solutions to contain the virus. A number of approaches that have been investigated include new vaccines to boost the immune system. An alternative post-exposure treatment is presented in this paper. The proposed approach for clearing the Ebola virus can be developed through a microfluidic attenuator, which contains the engineered bacteria that traps Ebola flowing through the blood onto its membrane. The paper presents the analysis of the chemical binding force between the virus and a genetically engineered bacterium considering the opposing forces acting on the attachment point, including hydrodynamic tension and drag force. To test the efficacy of the technique, simulations of bacterial motility within a confined area to trap the virus were performed. More than 60 percent of the displaced virus could be collected within 15 minutes. While the proposed approach currently focuses on in vitro environments for trapping the virus, the system can be further developed into a future treatment system whereby blood can be cycled out of the body into a microfluidic device that contains the engineered bacteria to trap viruses.
AB - The outbreak of the Ebola virus in recent years has resulted in numerous research initiatives to seek new solutions to contain the virus. A number of approaches that have been investigated include new vaccines to boost the immune system. An alternative post-exposure treatment is presented in this paper. The proposed approach for clearing the Ebola virus can be developed through a microfluidic attenuator, which contains the engineered bacteria that traps Ebola flowing through the blood onto its membrane. The paper presents the analysis of the chemical binding force between the virus and a genetically engineered bacterium considering the opposing forces acting on the attachment point, including hydrodynamic tension and drag force. To test the efficacy of the technique, simulations of bacterial motility within a confined area to trap the virus were performed. More than 60 percent of the displaced virus could be collected within 15 minutes. While the proposed approach currently focuses on in vitro environments for trapping the virus, the system can be further developed into a future treatment system whereby blood can be cycled out of the body into a microfluidic device that contains the engineered bacteria to trap viruses.
KW - Ebola virus
KW - genetically engineered bacteria
KW - microfluidic viral attenuator
UR - http://www.scopus.com/inward/record.url?scp=85047016738&partnerID=8YFLogxK
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U2 - 10.1109/TCBB.2018.2836430
DO - 10.1109/TCBB.2018.2836430
M3 - Article
C2 - 29994771
AN - SCOPUS:85047016738
SN - 1545-5963
VL - 15
SP - 2017
EP - 2027
JO - IEEE/ACM Transactions on Computational Biology and Bioinformatics
JF - IEEE/ACM Transactions on Computational Biology and Bioinformatics
IS - 6
M1 - 8359015
ER -