Dissecting metabolic flux in C₄ plants: experimental and theoretical approaches

C₄ photosynthesis is the carbon fixation pathway in specific plant species, so called C₄ plants including maize, sorghum and sugarcane. It is characterized by the carboxylation reaction that forms four-carbon (C₄) molecules, which are then used to transport CO₂ to the proximity of RubisCO in the bundle sheath cells. Since C₄ photosynthesis confers high photosynthetic as well as water and nitrogen use efficiency on plants, worldwide efforts have been made to understand the mechanisms of C₄ photosynthesis and to properly introduce the pathway into C₃ crops. Metabolic flux analysis (MFA) is a research field trying to analyze the metabolic pathway structure and activity (i.e., flux) in vivo. Constraint-based reconstruction and analysis tools theoretically study the distribution of metabolic flux in genome-scale network-based models. Different types of MFA and model-based analyses have been contributing to the discovery of C₄ photosynthetic pathways and to analyze its operation in C₄ plant species. This article reviews the studies to dissect the operation of C₄ photosynthesis and adjacent pathways, from the pioneer studies using radioisotope-based MFA to the recent stable isotope-based MFA and the model-based approaches. These studies indicate complex interconnections among metabolic pathways and the importance of the integration of experimental and theoretical approaches. Perspectives on the integrative approach and major obstacles are also discussed.