TY - JOUR
T1 - Ignet
T2 - 2016 Joint International Conference on Biological Ontology and BioCreative - Food, Nutrition, Health and Environment for the 9 Billion, ICBO-BioCreative 2016
AU - Özgür, Arzucan
AU - Hur, Junguk
AU - Xiang, Zuoshuang
AU - Ong, Edison
AU - Radev, Dragomir R.
AU - He, Yongqun
N1 - Funding Information:
This work was supported by grant R01AI081062 from the US NIH National Institute of Allergy and Infectious Diseases and by Marie Curie FP7-Reintegration-Grants within the 7th European Community Framework Programme.
Publisher Copyright:
© 2016, CEUR-WS. All rights reserved.
PY - 2016
Y1 - 2016
N2 - Ignet (Integrative Gene Network) is a web-based system for dynamically updating and analyzing gene interaction networks mined using all PubMed abstracts. Four centrality metrics, namely degree, eigenvector, betweenness, and closeness are used to determine the importance of genes in the networks. Different gene interaction types between genes are classified using the Interaction Network Ontology (INO) that classifies interaction types in an ontological hierarchy along with individual keywords listed for each interaction type. An interactive user interface is designed to explore the interaction network as well as the centrality and ontology based network analysis. Availability: http://ignet.hegroup.org.
AB - Ignet (Integrative Gene Network) is a web-based system for dynamically updating and analyzing gene interaction networks mined using all PubMed abstracts. Four centrality metrics, namely degree, eigenvector, betweenness, and closeness are used to determine the importance of genes in the networks. Different gene interaction types between genes are classified using the Interaction Network Ontology (INO) that classifies interaction types in an ontological hierarchy along with individual keywords listed for each interaction type. An interactive user interface is designed to explore the interaction network as well as the centrality and ontology based network analysis. Availability: http://ignet.hegroup.org.
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M3 - Conference article
AN - SCOPUS:85018790891
VL - 1747
JO - CEUR Workshop Proceedings
JF - CEUR Workshop Proceedings
SN - 1613-0073
Y2 - 1 August 2016 through 4 August 2016
ER -