Informative array testing with multiplex assays

Christopher R. Bilder, Joshua M. Tebbs, Christopher S. McMahan

Research output: Contribution to journalArticlepeer-review

Abstract

High-volume testing of clinical specimens for sexually transmitted diseases is performed frequently by a process known as group testing. This algorithmic process involves testing portions of specimens from separate individuals together as one unit (or “group”) to detect diseases. Retesting is performed on groups that test positively in order to differentiate between positive and negative individual specimens. The overall goal is to use the least number of tests possible across all individuals without sacrificing diagnostic accuracy. One of the most efficient group testing algorithms is array testing. In its simplest form, specimens are arranged into a grid-like structure so that row and column groups can be formed. Positive-testing rows/columns indicate which specimens to retest. With the growing use of multiplex assays, the increasing number of diseases tested by these assays, and the availability of subject-specific risk information, opportunities exist to make this testing process even more efficient. We propose specific specimen arrangements within an array that can reduce the number of retests needed when compared with other array testing algorithms. We examine how to calculate operating characteristics, including the expected number of tests and the SD for the number of tests, and then subsequently find a best arrangement. Our methods are illustrated for chlamydia and gonorrhea detection with the Aptima Combo 2 Assay. We also provide R functions to make our research accessible to laboratories.

Original languageEnglish (US)
Pages (from-to)3021-3034
Number of pages14
JournalStatistics in Medicine
Volume40
Issue number13
DOIs
StatePublished - Jun 15 2021

Keywords

  • group testing
  • pooled testing
  • sensitivity
  • sexually transmitted disease
  • specificity
  • specimen pooling

ASJC Scopus subject areas

  • Epidemiology
  • Statistics and Probability

Fingerprint Dive into the research topics of 'Informative array testing with multiplex assays'. Together they form a unique fingerprint.

Cite this