Metagenomics for Microbiology

Jacques Izard, Maria C. Rivera

Research output: Book/ReportBook

2 Scopus citations

Abstract

Concisely discussing the application of high throughput analysis to move forward our understanding of microbial principles, Metagenomics for Microbiology provides a solid base for the design and analysis of omics studies for the characterization of microbial consortia. The intended audience includes clinical and environmental microbiologists, molecular biologists, infectious disease experts, statisticians, biostatisticians, and public health scientists. This book focuses on the technological underpinnings of metagenomic approaches and their conceptual and practical applications. With the next-generation genomic sequencing revolution increasingly permitting researchers to decipher the coding information of the microbes living with us, we now have a unique capacity to compare multiple sites within individuals and at higher resolution and greater throughput than hitherto possible. The recent articulation of this paradigm points to unique possibilities for investigation of our dynamic relationship with these cellular communities, and excitingly the probing of their therapeutic potential in disease prevention or treatment of the future. • Expertly describes the latest metagenomic methodologies and best-practices, from sample collection to data analysis for taxonomic, whole shotgun metagenomic, and metatranscriptomic studies • Includes clear-headed pointers and quick starts to direct research efforts and increase study efficacy, eschewing ponderous prose • Presented topics include sample collection and preparation, data generation and quality control, third generation sequencing, advances in computational analyses of shotgun metagenomic sequence data, taxonomic profiling of shotgun data, hypothesis testing, and mathematical and computational analysis of longitudinal data and time series. Past-examples and prospects are provided to contextualize the applications.

Original languageEnglish (US)
PublisherElsevier Inc.
Number of pages175
ISBN (Electronic)9780124105089
ISBN (Print)9780124104723
DOIs
StatePublished - Nov 13 2014

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)

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